RNA id: XM_021576009.2


Basic Information

Item Value
RNA id XM_021576009.2
length 4800
RNA type mRNA
GC content 0.54
exon number 16
gene id LOC110499104
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21234211 ~ 21277617 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaggaagaagaagaaaaactgaCTGCCTCAAACACACACCCTTTCTATCAGGGCGTGCACACACTCGCAGACAGGTACAACAGGCAGGGATTGAGCAGGCAGGGATTGGCTGTAGCCAGTGTTAGAAGAAGtgggctacacacacactcacaaacacgcCGTGTTGTTTGTAGTTCTCGTGGAGAATTTATTCTACAGGGAGGGGTGCCGGGACTGCCGTGGAAAACTTTTTGGGTCTTGGAAACGCAACTCTGCCAGTAGCCTCTCCTGCTGTTCTCTTATGAGTATGGATCGCTAAACTTGGAGGAAGGTTGTACTTTATCCTTCCAGTGAATAGGGATATGGCCATACACTCAGTCCTCCAGCTCAAACTACAGCAGAGACGCACCCGGGAGGAACTGGTCAGCCAAGGGATCATGCCACCACTGAAGAGTCCGGCAGCCTTCCACGAGCAGCGGAGGAGTCTGGAGAGAGCCAGGaCTGAGGACTATCTGAAGAGGAAGATCAGGAGTCGTCCTGAGCGCTCAGAGCTGGTCAGGATGCACATACTGGAGGAGACGTCAGCAGAGCCGTCTCTGCAGGCCAAGCAGCTGCAGCTGAAGAGGGCCAGGCTGGCTGATGACCTCAATGATAAGATCTCCCACAGACCTGGTCCTATAGAGCTTATCCACAAGAACATCCTGCCTGTAGACCTGGACTGTCctctgcaacactcactactggatTCTCCAAAGGGTGCAGGAGAGTCCTCATTGGACGAGGACAGCAGTGATGCGTTTTCTCCGGACACTCTAGCCAATCACGACTCTCCACTGGGTGCTGTCTCCCAGCTGTCACCCTCTGACATGCTCACTCAGAACGGGGACATGTCCCCCTCACAGTTCCTTACCcaggtccctcctccccctcctccgctGTTGCTGAATGACCATGACTCCTTGCAACGACAGAAGCTGACCAATGGGACAGTGACGCCAGTTGCTTCCCGCCCTGTCAGTGGTCAAACCAAGTCCAAGCCCAGCTTGGAGCGCCTCTCCCAGAGGCCTAAGAAGTCAAAAGACGTGAAGCCCAAGGTGAAGAAGCTGAAGTACCACCAGTACATCCCTCCGGACCAGAAGGCTGACCGGGAGCCTCCCCCTCAGTTGGACTCCACCTACGCCAAGATCCTCCaccagcagcaactcttcctccAGCTGCAGATCCTCaaccaacagcagcagcagcactacaACTACCACACCATCCTCCCAGCACCAcccaaACCACCTGCAGAGCAGCCAACTTCAACAAACCCCGGCCCCTCCCCTTCACGCAGTGTTCCCCCGACGACCCCGGCCCCTTCCAATCAGCATGGGCCAAGTCGTCAGAGCCAAACCCCTGTGGGAGGGGCCAAACCTTTGACGTTACCAGCCAACCTGGATGACTTCAAAGTTGCTGAGCTGAAACAGGAGCTGAAACTGCGGAGTCTGACCGTATCTGGCACTAAGATGGACCTTATCGATAGGCTGAGAAACTACCAGGAGCAGAATGGTGGAGGTGGAGCTGGTGTCACTGCGACTGTAACCCCTAAACCCAGCCTACCAACCCCACAGCACGCCTCAACCCAACCTGCTGGCTTCACCATCTCTGCCCCCCCCCATGCCGGGACCAATACCCTCACCCACCAATCAGGAGAGGCAGGCGGGAAGATACCCGCTTTCTCATTGGCTCAGAGTGCTGCTCCAGCCCGTATTATGAGGTTTGGGAGTACAAACTCCTCCCCTCCTGTGTCTCCCACCCCGTCAGAACGGTCGCTGGCGGTAATGAGCCCCGATGAGACCAGCTGTAATGGAGACTTATTTGGGGAGATGGTGAGCTCTCCCCTGACCCAGCTCAGCCTGCACCCTTCCCCAGCCTCCATCAAAGAGGAGAACCAGGGTCACTTACCCACCTGCAGCCTCTCCCAGTCTCAGCTTTCACCCACTGCGCCTCAGCCTGCCACCCCACCTCAGGAGCCCTCAGGAGCCCCTGGGGCAGCCATGGAGGCCTCACCCTTGGACAAGGACCAGTTGCTCCAGGAGAAGGACAAGCAGATCGAGGAGCTGACACGCATGCTGAGGCAGAAACAGAGGCTGGTGGAGACCCTGCGCTCGCAACTGGAGCACGGGAAACAGACAGGATTGAAAGAGATGCAGGGTGTGGTGATAAACGGTTATGCCCAGGAGGCCCAAACCAAAACCACCTCCATCAGAGCCTCAACCATTCTCTATCCCACTCTCACCAATGGAGAGATGGTGAGGGTCAAGAAAGAGGTAGAGACgcaagaagagatggaggggttggaCGAAGCTCAGCCTAAGGGACAGCCTCAGCCGACACAGTGCTCCCAGCAGACTCTGCTCAAACTGCAGCAGATCCACCGGATACAGGTTCAACAACAGACACAACAACTACttcagacacaacaacaacagcagacacaacaacagcagtcccaacagcTCCAGCAACAAAAACAGCAACAACAGACACAGCAGATGCAGCAGCAGAAGACATCAGCCCAGATGCTActccagcaacagcagcagctgcagcagcTGATCatccagcagacccagcagaaaCAGCTCCAGCTGCAGCACAAACAGCTGCAGGTCCAGCAGAGGAAGCAGCAGAGACAGGCCCAGAGACAGCAGCAGAACAAACAACTGAGTCAGACCGTCACCACACAACAGGTCACTCCAGTCTTCATCGGCCAACAGAATGGCACCCAGGTCCCCGCCCAGACCTTCTCATTGGACCTCCTCAAGTCGGGCACCACACCCACCCTTGTCACCGACGGCAACGGCAACCACTACCTGATAGCACTGACCAATCACAATGCAGAGGGCCAGAACGGCATGACCTCATTGGGCAAAACTAGTGGATCACAACGCATCACACTACAGCGATTGCAGTCAACTCCAGGCAAACTCCCCAGCCAATCCCCAGCTGAGATACTCAGCTCTGACACTCAATCAAAACAACAGTTACAACCAGGCCCTGTCAACCAGCCTATCAAAAAGGAACAGAAGGCGGTTCTACATCTGGAGACCAATGGCATGACCAATGGAGTAACAGAGCCAAGTCAGTCTGTCTCCGCTCCGCCCAATCTCCATCCTTTCTTTGACGAGGTGTCAAACTCGTCTGAAAGCCCAAGCACAGCTTCCCCCTTCCTCAAGAGAGAAGTGTGTCCGACCTTTGACCGGCACACATTgttcacccctccctctcctaaacagacctctttctcctccactcaaCGCCTCAAAGAGAACGGCCTGAGCAGTCAACAGATGGACGACCTGTTTGACATCCTCTTGAAGAGTGGAGAAATCTCTGGATTCCGATCAGACCCTTCCCTGGCCCTCCTCCACtccaacccccccacccctccctcgtCCCCTCTCCACCTGTCGCCCCCCACACCCCCTCCGGAGCCCTCCCTACCCGCCCTGCCCTCCCAGCAGCCATTGCCCTGCCCAGGAAGTAGTCGTCTGGAGGATTTCCTGGAGAGCACCACCGGCACGCCCATCCTGGGAGTGGAGCCTGACGGTGGCCTGACTTTAATTGACGACCTCCACAGCCAAATGCTGAGCACCTCCAGCATCCTGGACCATCCCCCCTCCCCGATGGACATGGACACCAGTGACCTGGGCTTCTCCCCCCACCCAGCAGGGCTTGACTTCGGGGACCCAGCCCTGGACAGCATGGACTGGCTAGACATCTCcatgggaggtggagagggaacGAGTCTTGCCCCTCTGGGCCCCCACACGCTCCCTAGTGTGTTCTCAGTAGACTTTCTGGACAGCTCGGACCTCACTCTGCACTGGGACTCCTGTTTGTAGCTTCTACGGAGTGAGGAGTGGTAAAgactcacacacaaagacacacgctCACGCATACTGCGTACAGGCTCTTATCTCTCTCACGCAAACACTCTTACTTGATAAGCAGGTCCACCACTCTGGAGGTTACCTGGCCCAGCCACATTCACTGAGACCGGGGGCCTTGCCCTGCATTCACTCTAGTTGGACAGGCTGAAGAGCAAAACTGACtttagatcagaggcagtgggtgAGAGGTGGTACTGCATTAGTGGAGCTTGGTCTATGACACACCCTTATGGTGACAAAGGGTAATACACGTGGAGGGCAGACCCAAAGTGTCAGTGGTGCCTGCACTGATTGGTGGAAAGCTGTAATGAACAAACCTCATTGGTGGAAAATAATGAATCGAACCTCATTGGTGCAAACCAGAGGAGCTTTTACAATGGTATTTAATGTTTAGCTCAACGGAAACTGCACTGAACGACCAGTGGAAAAGCGGGTTGATTATGGTGGCCCAGAGGGAGGTTGTGTATGGTGTGTGCTGCACGAGTTAATACGATTTTCAAATGGTCACACCAATATTGATCAACCACACCTCGCTGCACTATCCAAACAGAAGCAAATGTACGGCAAAGGCTGTTGAACGGTACACGCCATTTTGGGGAAGCGTGTCCGCCACGCAACCTAGCAAACGTTGTATTGAATTGAACGCACCCCAATTGGTGAAATGAACCTCATTGGAGGAGGCAGTTACTGGAGGTGTTTGCTAGGCCACTATGCATTTCTGTATGTGGGGGGTGTATTATTGATTGTCCATGTTTTTCTTCCCAGTTGCATAGAATAGCAGGTGGGGAATAAAGTGGTCATGGCTTGGTTTCCAAACAACTTGGACCATGTCATTTtatatgaaaaaaatatatataaaaaatgcaATAAACTTGAAAATATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1914107 lncRNA upstream 32993 21212402 ~ 21213348 (+) True G1673011
TU1914079 lncRNA upstream 52377 21191637 ~ 21193964 (+) True G1672983
TU1914061 lncRNA upstream 111414 21134727 ~ 21134927 (+) True G1672968
TU1914013 lncRNA upstream 148861 21093726 ~ 21097480 (+) True G1672922
TU1914010 lncRNA upstream 155992 21090133 ~ 21090349 (+) True G1672919
TU1914137 lncRNA downstream 7163 21284780 ~ 21284990 (+) True G1673036
TU1914158 lncRNA downstream 34125 21311742 ~ 21312101 (+) True G1673057
TU1914299 lncRNA downstream 76946 21354563 ~ 21354777 (+) True G1673183
TU1914277 lncRNA downstream 105122 21382739 ~ 21383609 (+) True G1673166
TU1914315 lncRNA downstream 144599 21422216 ~ 21422971 (+) False LOC110499100
trnal-uag-53 mRNA upstream 17737 21228523 ~ 21228604 (+) True trnal-uag-53
XM_021576017.2 mRNA upstream 77687 21154535 ~ 21168654 (+) False LOC110499107
XM_021576015.2 mRNA upstream 77687 21154537 ~ 21168654 (+) True LOC110499107
XM_021576019.2 mRNA upstream 206230 21002651 ~ 21040111 (+) False LOC110499108
XM_021576002.2 mRNA downstream 54677 21332294 ~ 21377525 (+) True LOC110499103
XR_002469914.2 mRNA downstream 127905 21405522 ~ 21420610 (+) False LOC110499101
XM_021576000.2 mRNA downstream 127906 21405523 ~ 21420610 (+) True LOC110499101
XM_021575997.2 mRNA downstream 144551 21422168 ~ 21437402 (+) False LOC110499100
XM_021575998.2 mRNA downstream 144551 21422168 ~ 21437402 (+) False LOC110499100
TU1914069 other upstream 55263 21140525 ~ 21191078 (+) True G1672973
TU1914009 other upstream 156511 21089403 ~ 21089830 (+) True G1672918
TU1911957 other upstream 1018173 20227795 ~ 20228168 (+) True G1671091
TU1911253 other upstream 2121105 19095044 ~ 19125236 (+) False LOC110499153
TU1910972 other upstream 3150923 18075100 ~ 18095418 (+) False G1670209
TU1914145 other downstream 18755 21296372 ~ 21296854 (+) True G1673044
TU1914164 other downstream 39181 21316798 ~ 21317412 (+) True G1673063
TU1914333 other downstream 108712 21386329 ~ 21389778 (+) True G1673204
TU1914311 other downstream 145900 21423517 ~ 21437381 (+) True LOC110499100
TU1914366 other downstream 167266 21444883 ~ 21450346 (+) False G1673231

Expression Profile