RNA id: XM_021576000.2


Basic Information

Item Value
RNA id XM_021576000.2
length 2384
RNA type mRNA
GC content 0.52
exon number 13
gene id LOC110499101
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21405522 ~ 21420610 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagcccgcttctgtttgtgcgggcttgttcttctgtatttgtgagaggtgttaGTGTTTTTGTTGGGTTTTCGCGCTGTCCtggtattattttatttttttacttaagggTACTTATTGTAGTAATAGTTACACCTGTGTTGGGTATAACTATTTTGTTGTTCTTTTTGattttggacattaaagcgtgttttttttccccgcatcctttgctctctgcgcctgactccacacccattcactcattgaGCGTTACAACCTGCATCAACACACAGCGTGTCGTTAGCCATTCTAATCCGAAACACATTCGTAACGCCACACACTCGGTCGCAAGGGCTCCACCAGAGCCTTCCAGTGTAGCCTAGTTGGGGACAATGGCAGAGTGGAACGCCTACTACCAGAATGAGGATGAATATGTGGACAGggatgagtttgaagTGGACTATAAGTGCGCAGGGCGTGACAGCCTGGTGTTTCTGGTGGATGCTTCCAAGGAGATGTTCATcaggggggaggatggagagccCTCACCATTTGACATGACCATGCAGTGTGTCCACAGTGTGTATACCAGTAAGATCATCAGCAGTGACAAGGACCTGGTGGCTCTAGTGTTCTATGGGACGGAACAGAGCAAGAACCCCAGGAACACTTTCGAGCATGTCTATGTTTACCATGACCTGGACTCACCTGgtgcCCGTCGGGTGAAGGATGTGGACGGGCTGCGTGGGGAGAACGGTGCCCAGGTGGCAGATGAGACCATGGGCAGTGGGAAGACCAACCTGGTTGAGGCCCTGTGGTGCTGCTCCAACCTCTACAGCGACGTCAAGTTGCGGCTCTCCTACAAGCGCCTCATGATCTTTACCTGCCGAGACACGCCACACAGGGGCGACTGCGAGCGTGACCGCCAAGCCCGCACCAAGGCCGGTGACCTTAAAGAGACTGgtGTGGTGATAGACCTGATGCATCTGATGAAGCCAGGTGGGTTTGACGTCTCGCTTTTCTTCTGTGACGTGGTGAGCCCCCCTGAGGATGAGTCTGAGCTGGGCCTGCAGATGGAGCCTTGTGGGAAACTGGAGGACCTCCGGAAGAGGGTTCGAGCCAAGGAGATGAAGAAGAGATCCATGGCAAGGTTGAATCTGTGTCTGGGTGAAGGGATGAACGTGGCGGTGGGTGTGTACATCACGGTCCGACAGACCAAGAAGCCTAATGCCGTCAAGCTCTACAGAGACAACAACGAGCCTGTCCACACCAAGACACGCCTttaccacacacagacaggcagcctGCTGCTCCCCAGTGACACCAAGAGGGCTCAGgTGTATGCAGGCAGGCAGATAGTGATGGAGAAAGATGAGGTGGATGTGATAAAGAAGTTTTCTGACCCGGGTCTGGAGCTGATTGGGTTCAAGCCCATGGAGCGTCTCAAACTGCACCACCACCTCAGATCTGCTCTCTTCATCTACCCAGAGGAGGAGACGGTcacagGGAGTGCCTGTGTGTTTACAGCGTTGCTGCGCAGGTGTAGTGAGAGGAACGTGTTCGCTCTGTGTAAATACACACAAATCCGTAACTCTTCCCCACGCTTCTTAGCCCTGGTGCCCCAGAGAGAGGAGCTAGATGAGGGCCAGGCCCAGATTGAGGCTCCAGGCTTCCATGGCATCTTCCTGCCCTACGCGGATGACATCCGTAACCTGGACGCTCCTCAGCTCCCCACCGCCTCCGACGCCCAGGTGGACAAGATGAAGGAGATAGTACACAAGTTATCCTTCAAATACAGGAGTGATGCTTTTGAGAACCCAGTCCTCCAGCAGCACTACAGGTACCTGGAAGCCTTGGCACTAGATCCCATGGCCCCGGAACACATAGAGGAACACATAGAGGACCACACCGtgcCCAAGGTGAAGATGATTGACCAGTGTCTTGGTTCCCTGGCTCAGGAGTTTAAAGATCTGGTGTAACCTGCTGACCTAGAGGGCACCCAAACGCAAACCAGCTGAGGAAGCAGGCGGAGCAGAGAAGAAGCCTAAGGTGGAGATGTCTGAGGACGAGTTGAGGGCTCGTGTACAGAAAGGCACCCTGGTAAGCTGACGGTGCCTGCGCTAAAGGACGCATGTAAGCAGTTTGGGGTGAAGGTCACAGGGACCAAGAAACGGGAGCTAATAGACACCTTGAAGGCACAGCTCGCAAAATGAGGCATAGATGTCAATATATGTTTCTGTCGATTTTTCTGGTCAGAAGTGCTTGGTAGCAGGATTATTGATACGTTTTTGCTTTGGGGTTCCATTTTAAGGGTTCTAGCCAGAGATATCAAGTTTTTCATTTGTTGCTTATTTTTACATGTTTTAATCtttgtaataaaaaaataaagggcAATTGCTTCAA

Function

GO:

id name namespace
GO:0006303 double-strand break repair via nonhomologous end joining biological_process
GO:0010212 response to ionizing radiation biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0000723 telomere maintenance biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0043564 Ku70 cellular_component
GO:0042162 telomeric DNA binding molecular_function
GO:0003684 damaged DNA binding molecular_function

KEGG:

id description
K10884 XRCC6, KU70, G22P1; ATP-dependent DNA helicase 2 subunit 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1914277 lncRNA upstream 21914 21382739 ~ 21383609 (+) True G1673166
TU1914299 lncRNA upstream 50746 21354563 ~ 21354777 (+) True G1673183
TU1914158 lncRNA upstream 93422 21311742 ~ 21312101 (+) True G1673057
TU1914137 lncRNA upstream 120533 21284780 ~ 21284990 (+) True G1673036
TU1914107 lncRNA upstream 192175 21212402 ~ 21213348 (+) True G1673011
TU1914315 lncRNA downstream 1606 21422216 ~ 21422971 (+) False LOC110499100
TU1914316 lncRNA downstream 1606 21422216 ~ 21423455 (+) False LOC110499100
TU1914393 lncRNA downstream 58022 21478632 ~ 21536718 (+) True G1673251
TU1914493 lncRNA downstream 200841 21621451 ~ 21621681 (+) True G1673333
TU1914494 lncRNA downstream 202598 21623208 ~ 21623435 (+) True G1673334
XM_021576002.2 mRNA upstream 27998 21332294 ~ 21377525 (+) True LOC110499103
XM_036955960.1 mRNA upstream 127906 21242309 ~ 21277617 (+) False LOC110499104
XM_021575997.2 mRNA downstream 1558 21422168 ~ 21437402 (+) False LOC110499100
XM_021575998.2 mRNA downstream 1558 21422168 ~ 21437402 (+) False LOC110499100
XM_021575999.2 mRNA downstream 1558 21422168 ~ 21437402 (+) False LOC110499100
XM_021575996.2 mRNA downstream 16925 21437535 ~ 21442026 (+) True LOC110499099
LOC118941998 mRNA downstream 75784 21496394 ~ 21517265 (+) True LOC118941998
TU1914333 other upstream 15745 21386329 ~ 21389778 (+) True G1673204
TU1914164 other upstream 88111 21316798 ~ 21317412 (+) True G1673063
TU1914145 other upstream 108669 21296372 ~ 21296854 (+) True G1673044
TU1914069 other upstream 214445 21140525 ~ 21191078 (+) True G1672973
TU1914009 other upstream 315693 21089403 ~ 21089830 (+) True G1672918
TU1914311 other downstream 2907 21423517 ~ 21437381 (+) True LOC110499100
TU1914366 other downstream 24273 21444883 ~ 21450346 (+) False G1673231
TU1914367 other downstream 24273 21444883 ~ 21450346 (+) False G1673231
TU1914368 other downstream 24273 21444883 ~ 21450346 (+) False G1673231
TU1914369 other downstream 24273 21444883 ~ 21450346 (+) True G1673231

Expression Profile