RNA id: XM_021575999.2


Basic Information

Item Value
RNA id XM_021575999.2
length 3201
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110499100
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21422168 ~ 21437402 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGCTATGACAAGCGAATGACGCTTTGCGCATGCTCATGGAGATCTACGGAGCTAGATGGGGGGGGTAAAAGTGCAAAAGACAAAGGACTAAACAACCCAGGAAAAGAAGCTAAACGATTAATTTCACCAGGATTATGACATGCCTACTACAGTAGTATCGCATAAAGAGAAAGcatgacaaacaCTTGATTTGGGTGGTGACAACTTTATTTAACATGCATTTCTGCCTCTCGTCTTCCTACCTCAGTTGTATTCCTAAGGAGTCCTGTCTGTCTACACATCACTGAGCCTCATGTATCAAGTCCCTCATCTTTTCCACTGGAACTGACTCCTCATGGTGGAACCGTGGTACTCTTTGGGTTCTCTAGAAATGGAAAGAACTAGTAAACTTTAGTCTGACAGTTgaggtgcaaaaaaaaaaaaaatcacgagGACAGACGTCAGAATGGAGGAAGTTGAAAAAAGAGATGCATGCTCTTGCTTCTCTGCCTAGTATTTGTTTAGCTATAGATGTGACCTTGGGGGTTCGTAATCTTTTTACTCTGACGTAGCTGCATAAATGTTCACACCCTCCTTTTTGCTCTCATAATTAAATCTGGACCTTACTCCACACTTGGAACATTTTTGTTTTCCAGCAGTTTTTTAAAATTTTCTACCAGTCAGCACTTTTGAAACAGCAGGCTAGCTGAAGTGGCCTGGCCCACCTCAGTGTCACCCAGTAACCCACCTCCCCCTTCCCTTGCCACATGCACGCCCCTCCAGCAGCTGAGCGGTTGCCATGGCGATGGTAGTTGTGTCAGCGTAGCGACAGGGTGACAGTGATGGGGAGTACTCCATTTTCTGgtaaggggagggggggaggagggctGCAGGACCTGGGCTGTATGCCATGGAAGCTAAGCAAACAGAAAGGGATGGTGGGGGGtgaggtggggggagggggggaggagaggtcgAACCTGAGAGAACATGATATCTCGACCCCTCCGGCCCCGCCTCCAACCCCCATCTACCACGAGAAGCAACGGCGGGAGCTGTGTGCTCTGCATGCGCTCAATAACGTCTTCCAGGACGGGGCGGCTTTCAGCAGGGATACACTCCAGGACATCTACCAGAGACTCTCTCCCGGCACTCTGGTAACCCCCCACAAGAAGAGCGTGCTGGGAAATGGGAACTATGATGTGAATGTCATTATGGCCGCCCTGCAGACCCGAGGGTTCGAGGCTGTCTGGTGGGATAAAAGAAGGGATGTGGGCAGTATAGCTCTGTCCAACGTAACAGGCTTCATCCTGAACGTCCCGTCCAATCTGCGATGGGGTCCACTGCGCCTGCCACTCAAACGGCAGCACTGGATAGGGGTGCGGGAGGTGGACGGAGTCTATTACAACCTCGACTCCAAACTACGCAGCCCACACACCATCGGAAACCCTGATGAGCTCAGGAAGTTCCTGCGTCACCAGCTGAGAGGGAAAAACTGTGAGCTCTTATTGGTGGTGTCTGAGGAGGTGGAGGTCCACCAAACATGGAGGTCAGATGGCTGTTGATTGAATGTGCCTGCCAACCTTTTCTCTACCGGATTAGACTTTTCCCAGTTGCTGCTCAGGATAACAGGCGTGGTCCAAGCAGGGTATAGATTGAAAAGCAGGTGGGGTTGTGCTCAGCCAATCACACAGATGCGCACTGGCCGGATGTACTTTTTCTGCTTCCTCACCCATTGCTGGACTCTGGCTGAAACCTGAAGTGATGAAGGAAATGGACGCATACAGGGAGGTCACGAAGAATTCACACTACACAACACTTAGATTTATGAACATACTGTTTGGGATTCTGTGTTTATATATTGATTATTTTtcaatgtttattttttgttgtatATTACTGTTTCCAAGTATGGGAGGCGTGTGACTGTgtaatctctcgctctctccctccccccctcctgtttacccctgtactgtatattcaCTGATGTGTCTTTTatgtttctctctttttctttgtatctctGTGTCCTTCTCTGCTCTACTACGACTGTACATCTCCTTTACCTCAGTGTCTTCCTCTGTCACCACTCACAATTAGTTTTTTCCACTCGGCCAACactaaatccccccccccccccccagtgtatGCCAGTGTATGCAGCTGTTTTATCCTCTCAGTTACTGCTGAGGCCATCTGTCTGTTAGTAGAAATCCTTGCTAGTTCCTGTCTTCAAACTAGAATTCTAAGCTAAGGTTGTGTTAGGCCCAGGTATTGACGAATGGCTGGATACTGTAACAAGGTAGAGCCAGGAGGGTTTCAATGTGATCTGATTAGGAAAATCCACCATCTGCAAGTCACAGCCCAGGgggagttattttctgttttgtagtAAAGAAAAACTCCTGAGCAATTGACCATGGCTAAATAGTTATTTGCAAAAATCCACCTGCCAAATATACAGAATTGTGGAATCAGTAGAAATTGTTATTATACCCAAGGTTTAGAATTGTTCACTGAAAATGCACTGTTAGATTTTGATCCATCTGTAGATGCCATGGCTGAAATGTCCAGAATGCTGAGTGAGTTGTGAGAAGTGGAGTAAGAGGGGAAAAGGTTGACAGTTGAGCGAATAATAGAAAGAGAAAGTGATCCATGTGTAGAAGGAAAAAGTGAAAGAACGACATGAGTCCAGCCAGACCATGTTAGTTTTGAAATCAGCCATTTGAGGAATTTGTGTTGGTTGATGGGTCTTTATCATCACAACAACATATTGTGTATTATTGAAGACTTGATCATAGCTTTAATGTGTTTACAGAGGAAGCAGGCATTATTCTCTACCTAAAGAGGGGTTGTTGAATTTTGCTCCTCATTGGCTCAAGCCCAACACTTTTCCTATTCATCTGAGCATCCAATCGCTGGTTAAACTGATAATTTAATAATTTGCGACTATCACTAATCATGAGACAAATCAATGAGGTTGTTGGACTGAGGCTTCCCCTAGGGGAATTCATGTTGGGCAACCAAACTCACAGGTAGAAAATCCCctcactactttaaaccagggtatttggGGGGGGAAACTGTGGTGACAGAGGATTTTGTTTTTGCCATGACAATCCCACCCACCTTCTCCCCTCTATTGAAGGGTCCTGGTTGTGTTATTTTCTCTTGTTTTTCACAAAAATAAAATGCTTGTAATGGCACTTTATGTACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1914277 lncRNA upstream 38559 21382739 ~ 21383609 (+) True G1673166
TU1914299 lncRNA upstream 67391 21354563 ~ 21354777 (+) True G1673183
TU1914158 lncRNA upstream 110067 21311742 ~ 21312101 (+) True G1673057
TU1914137 lncRNA upstream 137178 21284780 ~ 21284990 (+) True G1673036
TU1914107 lncRNA upstream 208820 21212402 ~ 21213348 (+) True G1673011
TU1914393 lncRNA downstream 41230 21478632 ~ 21536718 (+) True G1673251
TU1914493 lncRNA downstream 184049 21621451 ~ 21621681 (+) True G1673333
TU1914494 lncRNA downstream 185806 21623208 ~ 21623435 (+) True G1673334
TU1914529 lncRNA downstream 238623 21676025 ~ 21681986 (+) True G1673368
TU1914530 lncRNA downstream 238912 21676314 ~ 21682360 (+) True G1673369
XR_002469914.2 mRNA upstream 1558 21405522 ~ 21420610 (+) False LOC110499101
XM_021576000.2 mRNA upstream 1558 21405523 ~ 21420610 (+) True LOC110499101
XM_021576002.2 mRNA upstream 44643 21332294 ~ 21377525 (+) True LOC110499103
XM_021576009.2 mRNA upstream 144551 21246341 ~ 21277617 (+) False LOC110499104
XM_021575996.2 mRNA downstream 133 21437535 ~ 21442026 (+) True LOC110499099
LOC118941998 mRNA downstream 58992 21496394 ~ 21517265 (+) True LOC118941998
XR_005037959.1 mRNA downstream 80943 21518345 ~ 21562573 (+) False LOC110499098
XR_005037958.1 mRNA downstream 108590 21545992 ~ 21562573 (+) True LOC110499098
XM_021575992.2 mRNA downstream 135633 21573035 ~ 21586408 (+) False LOC110499096
TU1914333 other upstream 32390 21386329 ~ 21389778 (+) True G1673204
TU1914164 other upstream 104756 21316798 ~ 21317412 (+) True G1673063
TU1914145 other upstream 125314 21296372 ~ 21296854 (+) True G1673044
TU1914069 other upstream 231090 21140525 ~ 21191078 (+) True G1672973
TU1914009 other upstream 332338 21089403 ~ 21089830 (+) True G1672918
TU1914366 other downstream 7481 21444883 ~ 21450346 (+) False G1673231
TU1914367 other downstream 7481 21444883 ~ 21450346 (+) False G1673231
TU1914368 other downstream 7481 21444883 ~ 21450346 (+) False G1673231
TU1914369 other downstream 7481 21444883 ~ 21450346 (+) True G1673231
TU1914569 other downstream 375843 21813245 ~ 21813826 (+) False tnrc6b

Expression Profile