RNA id: XM_021575993.2


Basic Information

Item Value
RNA id XM_021575993.2
length 1703
RNA type mRNA
GC content 0.46
exon number 5
gene id LOC110499096
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21573035 ~ 21586408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTCTACGAGGTGCGATTTCTCTTGaccaaaaaaacgttttttttttttgttggatTATTTGGAGAATCGATCAGAATCTGAGAGGTTAACTAATGTCGAGTCGTTTGCTGCAACATAACCTTTAGCCTAATCTCGATGTCACTATCTCTGAACTGATAGGCTACTTTTTTTCACGGACAGGAGATTGGTAGGGTAGTCCAAGCTTCATTGTTGAAGTAGCCTATCTTTAAATTTAGTTGTTGCGTAATTACCGGCAAAAATGTCTGGAGAGGATCACAACCAAGAATGAAACATTCAAGGGGTCACCGGGTGCGTTTCCCGTGGTATTGAAGAAAATCATGTTAATGCCCCAACCGAATTTATTCGAGAGCGACGATGACAATGACAAGGATAAGCTTTTTACGGGGGACAATGTGGACCTTGGAGGAGGGAGCGGGATGGGTCCGTCGGCCGCCCTGACCCCCGCCATCTGGGATAAGACCATCCCGTACAACGGGGAGACCTTTCACCTGGAGTACATGGACCTGGAGGAGTTCCTCATCGAGAACGGAATCCCCACCTTGTCCCTGGACAATGCTCTCAACATGGAAATTGCAGGGAAGAAGACAGAGAAGCCAACTAGCACCACGACAGCCCCCGCTGCCCCAATCTCCCTGCTGCCGGTCCTGGAACTAGACCAGTGTGAGGAGGAGGTGGTCACCGTCACCCTCAACAGTGCTGATATCACAGCCAACATCGAGGTGGTGACAGACAAGGACAGGCTGACCCCTGAAACCATCGACCCGGAGGAGATTGAGGTGAACGTGAACTTTGATCCGGACCCTACGGACCTGGTCCTGTCCAGCGTTCCTGGAGGAGAGCTGTTCAACCCACGCAAACACAAGTTCTCAGAGGAGGAACTCAAACCACAGCCCATGATCAAGAAGGCCAAGAAGGTGTATGTACCTGAGGATTCTAAGgATGAGAAGTACTggcagaggaggaagaagaacaaCGTGGCGGCAAAGCGTTCCCGGGACGCGCGCCGACTCAAGGAGAACCAGATCACGGTGCGGGCGGCGTTCCTGGAGCGTGAGAACACGGCGCTACGACAGGAAGTGGGCGAGCTACGGAATGACTTTTCCCGCAGCAAGAATGTTGTGGCCCGCTACGTGGCCAAATTCGGAGAGCTTGCATTGCTGGAAGACCAGTAGACTATTATTGATTTATTTGTGGCGTGGGTGAAGTAATTTAATCAAATACAATGGATAGATGGATCAGAAGATGGAGTGTGGAAGAGTGTGAATGATGTTGCCGTGTAGATACTGTGGAATTGTATTAGTGACCGCTGCTTATTGTTTTTAtttgactttttattttatttaatttagggggtagatcagctttaatattgcaaatAGATTGTAGAttgttccatcaatgtaattgtatgcATCATTTCTAATCCCCACCCATATAtttgttttgtaaatatatatttttattttcccctaaccctaccacccctcccctaatttgagtaaactaatggacaacaacactttgGCTTTTTAAGGACACAGTGTATTTTACAATagttgtttttagtcccatccttcagctcccctcaacccatctctgaagaccatccattttttatttaattttaccatatttttaactgtgctgtttcacaaacgttctgaacctatatacattttac

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09058 TEF; thyrotrophic embryonic factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1914393 lncRNA upstream 39098 21478632 ~ 21536718 (+) True G1673251
TU1914316 lncRNA upstream 152361 21422216 ~ 21423455 (+) False LOC110499100
TU1914315 lncRNA upstream 152845 21422216 ~ 21422971 (+) False LOC110499100
TU1914277 lncRNA upstream 192207 21382739 ~ 21383609 (+) True G1673166
TU1914299 lncRNA upstream 221039 21354563 ~ 21354777 (+) True G1673183
TU1914493 lncRNA downstream 35043 21621451 ~ 21621681 (+) True G1673333
TU1914494 lncRNA downstream 36800 21623208 ~ 21623435 (+) True G1673334
TU1914529 lncRNA downstream 89617 21676025 ~ 21681986 (+) True G1673368
TU1914530 lncRNA downstream 89906 21676314 ~ 21682360 (+) True G1673369
TU1914502 lncRNA downstream 114663 21701071 ~ 21701804 (+) True G1673341
XR_005037959.1 mRNA upstream 13243 21518345 ~ 21562573 (+) False LOC110499098
XR_005037958.1 mRNA upstream 13243 21545992 ~ 21562573 (+) True LOC110499098
LOC118941998 mRNA upstream 58551 21496394 ~ 21517265 (+) True LOC118941998
XM_021575996.2 mRNA upstream 133790 21437535 ~ 21442026 (+) True LOC110499099
XM_021575999.2 mRNA upstream 138414 21422168 ~ 21437402 (+) False LOC110499100
XM_021575991.2 mRNA downstream 8473 21594881 ~ 21614231 (+) True LOC110499095
XM_021575990.2 mRNA downstream 41497 21627905 ~ 21636035 (+) False csdc2a
XM_021575989.2 mRNA downstream 41566 21627974 ~ 21636035 (+) True csdc2a
XM_021575987.2 mRNA downstream 70527 21656935 ~ 21685353 (+) True si:ch73-139e5.4
XM_021575984.2 mRNA downstream 124103 21710511 ~ 21721556 (+) False cby1
TU1914366 other upstream 125470 21444883 ~ 21450346 (+) False G1673231
TU1914367 other upstream 125470 21444883 ~ 21450346 (+) False G1673231
TU1914368 other upstream 125470 21444883 ~ 21450346 (+) False G1673231
TU1914369 other upstream 125470 21444883 ~ 21450346 (+) True G1673231
TU1914311 other upstream 138435 21423517 ~ 21437381 (+) True LOC110499100
TU1914569 other downstream 226837 21813245 ~ 21813826 (+) False tnrc6b
TU1914567 other downstream 247486 21833894 ~ 21845866 (+) False tnrc6b
TU1915004 other downstream 350234 21936642 ~ 21959627 (+) True LOC110513322
TU1916535 other downstream 1670396 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 1993622 23580030 ~ 23581387 (+) False faap100

Expression Profile