RNA id: XM_021575989.2


Basic Information

Item Value
RNA id XM_021575989.2
length 1843
RNA type mRNA
GC content 0.44
exon number 4
gene id csdc2a
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21627905 ~ 21636035 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcttttcattTTGCGCCTTCATCATCCAGACAGACCAGTTTGTGCAGCGAAACCACATACAAGAGGAAGGTATTCTCTCCATATCTGTGCATTATATTGTTATTTCATTATATAATTATCGTCATATAACAGTTAAGACATCAACACGTTTGACCGAAAACAGAGTAACATTTTACGGCAACCACCAAGCTCCTCCATTATCCCGTCTTCCAGACACATACTAAACCACCACCACAAACACAACACCCATCAATCACCCTTATCATGCAGACAGTCTAGGTCTGTCTCCCTGGCTGTGACCCACCCGAGGCTGAGGCAGATTCTCCTACAGAGCTCCACACCCCCAGGGGGACCCCCACAGAGATGGCTGATTCAGACCCCTCGTCCCCCTCCGATCCCCCACGGCCACTGAGCTCCCCCCgcacccctctctccctatcaTTCCCCTTCCTCAGGGAGGGAAGTCGGGTGTGGGAGAGGGAAAGGAAACCCCCCCTGATGCCAGGCGAGCTGCCAAGCCCTCTGCCCACCAAACGCACCCGCACATACTCAGCTACGGTGCGGGCCAGATCAGGCCCAGTGTATAAGGGCGTGTGTAAGACCTTCTACAGGTCCCAGGGTCATGGCTTTATAAAGCCCTCCAACGGTGGAGAGGACATCTTTGTACACATCTCTGATATCGATGGAGAATACGTGCCCATGGAAGGTGACGAGGTCACGTACAAAGTCTGTTCCATCCCCCCCAAGAACCAGAAGATCCAGGCAATGGAGGTTGTCATCACCCACTTGGCCCCAGGAACCAAGCATGAGACCTGGTCTGGACAGATCATCAGCTCCTAGACCTCCACCTGCATCTGCAAATAGGCAGtgtggtggagggtgggggttgggagagaaggtgggaaggAGCCTGGAGAGGTAAAGGGGGAGGTGGGAGAAGTGGAGTCCAGGGTAGGGAGATAAGGTGGGGGAGGAAGGAGCCTAGAGGTAAAGGGGAAGAAGGAGGAAGTAAACAAGCACAGGGAGCAGTGGAAGGAGTGATTACGTGAAGGTGTAACCCTGAGGGTTGGAATGTGGTAATATAAGGCTTAAGACAGCGTTAAGTAGGTTTCAGTTGGAATGTGAATGAGGAAAAGTTAAATATTTAAGTTAGGAAAAGAGTCCAGGTTAAATTGGATTAAAGCTTGATGGTTTATTTAAGATTATTTAAAATGGCAGGAGTCTAGTACGTTTTAATAAGACACTGCTGTAAGGAAAACTGTGAAACAAAGAGCAACAAACCTTCCTAAATGATGTTGTTTTTATTCAtactttgatttatttatttaatttttattcgTTATGACAAGTGAGGTAGATATTGTTAAGATTATACATTTGTGTTTTAATGCCAATATATGCCTGGTCTAACCCATCGCACAATTCACTCTGATGATACTGCCCTGGTAATGCCCACTCCTTCAGTCTAATGTTGACCAATGACAATTTATTAATCTTTGTAACAGAGTTATTGATGATTACTATATGAGGTTCAAAACTCCTTTTTAAAAAATCATTAAAACACATGTTATCATAGTAATAGACAAGAAATGAACATGTACTGTTGTCAATAGTCTCATACTTTCATCATGCAGTTTTAGTCTTTTGTAAACATAATTAGGTTTATATGCATTGTTAATACCATGTTTTATTTATTGTGACTAAATTATATAGTACTATGTGTCTCTTCTTATGTTGGGAAACTGTCTGAAGTTTCATTGTGTTCTAGAGCACTTTTTACGTCGATTCACTGTGACTAACGTGTTGTCATTAGGATAAAAAGTTACTACTGTATTATTCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1914494 lncRNA upstream 4539 21623208 ~ 21623435 (+) True G1673334
TU1914493 lncRNA upstream 6293 21621451 ~ 21621681 (+) True G1673333
TU1914393 lncRNA upstream 91256 21478632 ~ 21536718 (+) True G1673251
TU1914316 lncRNA upstream 204519 21422216 ~ 21423455 (+) False LOC110499100
TU1914315 lncRNA upstream 205003 21422216 ~ 21422971 (+) False LOC110499100
TU1914529 lncRNA downstream 39990 21676025 ~ 21681986 (+) True G1673368
TU1914530 lncRNA downstream 40279 21676314 ~ 21682360 (+) True G1673369
TU1914502 lncRNA downstream 65036 21701071 ~ 21701804 (+) True G1673341
TU1914601 lncRNA downstream 168521 21804556 ~ 21804932 (+) True G1673434
TU1914560 lncRNA downstream 170874 21806909 ~ 21811368 (+) False tnrc6b
XM_021575991.2 mRNA upstream 13743 21594881 ~ 21614231 (+) True LOC110499095
XM_021575992.2 mRNA upstream 41566 21573035 ~ 21586408 (+) False LOC110499096
XM_021575993.2 mRNA upstream 41566 21575816 ~ 21586408 (+) True LOC110499096
XR_005037959.1 mRNA upstream 65401 21518345 ~ 21562573 (+) False LOC110499098
XM_021575987.2 mRNA downstream 20900 21656935 ~ 21685353 (+) True si:ch73-139e5.4
XM_021575984.2 mRNA downstream 74476 21710511 ~ 21721556 (+) False cby1
XM_021575985.2 mRNA downstream 75257 21711292 ~ 21713888 (+) False cby1
XM_036955972.1 mRNA downstream 75257 21711292 ~ 21721556 (+) False cby1
XM_036955974.1 mRNA downstream 75291 21711326 ~ 21721556 (+) False cby1
TU1914366 other upstream 177628 21444883 ~ 21450346 (+) False G1673231
TU1914367 other upstream 177628 21444883 ~ 21450346 (+) False G1673231
TU1914368 other upstream 177628 21444883 ~ 21450346 (+) False G1673231
TU1914369 other upstream 177628 21444883 ~ 21450346 (+) True G1673231
TU1914311 other upstream 190593 21423517 ~ 21437381 (+) True LOC110499100
TU1914569 other downstream 177210 21813245 ~ 21813826 (+) False tnrc6b
TU1914567 other downstream 197859 21833894 ~ 21845866 (+) False tnrc6b
TU1915004 other downstream 300607 21936642 ~ 21959627 (+) True LOC110513322
TU1916535 other downstream 1620769 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 1943995 23580030 ~ 23581387 (+) False faap100

Expression Profile