RNA id: XM_036955972.1



Basic Information


Item Value
RNA id XM_036955972.1
length 954
RNA type mRNA
GC content 0.40
exon number 4
gene id cby1
representative False

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21710511 ~ 21721556 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gggaccggccagttagagggagatgagatgtgtgtttatataaggaagagggggtcagtcttatggctgggtgtatgtgttcttacgacggaatgtctttgtttatatgagctatgtgtataaatatttatataacaaacaTTAAACTTCCACAAACTCTGTTTGTCTCACTTCAGAGCTATCTATAACGCCGCTGATTAAGAAGATGCCGTTTTTTGGAAACACCTTCAGTCCAAAGAAAACCCCTCCTCGcaagtctgtttctctctccaatCTGCACACGTTGGATCGGTCTACGAGGGAAATAGAGTTGGGTCTTGAATATGGAGCCCCTGTAATGAACATCGGGGGGCAGAGCTTGAAATTTGAAGAGGGACAATGGATTGCAGAGTCTGGAGGGAATGCATCAGGGAAGGAGGTGCAGAGACTAAAAAAGAGGAACTTACAGCTTGAAGAGGAGAACAACCTACTGAGGCTGAAGATTGACCTCCTGTTGGACATGTTGTCAGAAACCACTGCAGAGTCTCACCTGATGGAGAAGGAACTGGAGGAGGTGAAAAATCACAGCCGAAGGAAGAAGTGATGAATAGAAAACTGAAGACGGGTTTCCCAGTGACACTTGAAAAGGAATTAAGGGGATAGATGAGGGATGGTGATGGATGGCAGTGTTAGTGACCAACTGTGCTGTAAAATTAGACTTTTATACATTATATACGTTATAGGATTTTAAATCGTTGAAGGTATGAGAGTTTAAATGTGCTCTATCCTTTTATAAAAATGAATTTCTTTGATTCATTAATTTTGTAAGCATTATCGTATCAGTGCTGAACTATTTTAGAATACAATGATTTATATTCaacgtcctgtgtgtgtgtgtgtatgggtttgGCAGCTGTGTGTATTAGAATATTTGTTTTCATATCCTTTCTACTTTATTAAAAGGTTTTAACTACA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1914502 lncRNA upstream 9488 21701071 ~ 21701804 (+) True G1673341
TU1914530 lncRNA upstream 28932 21676314 ~ 21682360 (+) True G1673369
TU1914529 lncRNA upstream 29306 21676025 ~ 21681986 (+) True G1673368
TU1914494 lncRNA upstream 87857 21623208 ~ 21623435 (+) True G1673334
TU1914493 lncRNA upstream 89611 21621451 ~ 21621681 (+) True G1673333
TU1914601 lncRNA downstream 83000 21804556 ~ 21804932 (+) True G1673434
TU1914560 lncRNA downstream 85353 21806909 ~ 21811368 (+) False tnrc6b
TU1914570 lncRNA downstream 91396 21812952 ~ 21813178 (+) False tnrc6b
TU1914563 lncRNA downstream 124400 21845956 ~ 21848439 (+) True tnrc6b
TU1914967 lncRNA downstream 131256 21852812 ~ 21853020 (+) True G1673748
XM_021575987.2 mRNA upstream 25939 21656935 ~ 21685353 (+) True si:ch73-139e5.4
XM_021575990.2 mRNA upstream 75257 21627905 ~ 21636035 (+) False csdc2a
XM_021575989.2 mRNA upstream 75257 21627974 ~ 21636035 (+) True csdc2a
XM_021575991.2 mRNA upstream 97061 21594881 ~ 21614231 (+) True LOC110499095
XM_021575993.2 mRNA upstream 124884 21575816 ~ 21586408 (+) True LOC110499096
XM_021575983.2 mRNA downstream 3992 21725548 ~ 21729360 (+) True LOC110499089
XM_021575982.2 mRNA downstream 18404 21739960 ~ 21755576 (+) True sh3bp1
XM_036955975.1 mRNA downstream 85147 21806703 ~ 21848442 (+) False tnrc6b
XM_036955976.1 mRNA downstream 85147 21806703 ~ 21848442 (+) False tnrc6b
XM_036955977.1 mRNA downstream 85148 21806704 ~ 21848442 (+) False tnrc6b
TU1914366 other upstream 260946 21444883 ~ 21450346 (+) False G1673231
TU1914367 other upstream 260946 21444883 ~ 21450346 (+) False G1673231
TU1914368 other upstream 260946 21444883 ~ 21450346 (+) False G1673231
TU1914369 other upstream 260946 21444883 ~ 21450346 (+) True G1673231
TU1914311 other upstream 273911 21423517 ~ 21437381 (+) True LOC110499100
TU1914569 other downstream 91689 21813245 ~ 21813826 (+) False tnrc6b
TU1914567 other downstream 112338 21833894 ~ 21845866 (+) False tnrc6b
TU1915004 other downstream 215086 21936642 ~ 21959627 (+) True LOC110513322
TU1916535 other downstream 1535248 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 1858474 23580030 ~ 23581387 (+) False faap100

Expression Profile