RNA id: XM_021575983.2


Basic Information

Item Value
RNA id XM_021575983.2
length 1998
RNA type mRNA
GC content 0.44
exon number 6
gene id LOC110499089
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21725548 ~ 21729360 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTGAATATTGCGTCATTGTACTTTTAACGCCTTCCACTCTTGTTGCTCTCAGGAAGCGGGTAAAAGATAGTCTAGCTGGAAGAGGACTGTGTCGCGAAGGCCTTTTCTTTAGAAAATAAACTCTATGTTTAACTGGAAACAGTGAACTTATTTATTTGCGGTCTTAGTCGTTCAAGTTCCTATACCAAATATGCCAAGAGGCGgtAAAAAAGGTCACAAGGGCCGGGGAAAGCAGTTCAGCAACCCTGAAGAGATTGATAGACAGATGAAAGCACAGAGAGAGCTGGAGGCGAACGGTGGagtagagaaggaggaggagaagtcaTCAGGATCTGATGACAGCAGCAGTGAAGAGGAGGACGTTAATAAGAAGAAGAGTGGAGTGGAAGGATTGATTGAGATTGAGAATCCCAACCGTATATCCCAGAAAAGTAAGAAGGTGACCGAGCTTGATGTCAACGCACCCAAAGAGCTGTCACGCCGAGAGAGggaggagatagagaagcAGAAAGCTAAGGAACGCTACATGAAGCTTCACCTAGAGGGGAAGACAGACCAGGCACGGGCCGACCTCGCCAGGCTGGCCATCATCAAGAAGCAGAGAGAGGACGCACAAAAGAAGAGGGACGGCCTCAAAAAAGAAAAAGAAGCTGAAGACTCCAAGTCCAAGCGTTAGGCCTGTCTCCCGAGGACTTGGCCTGGAAAACGATctggggaggatggagagacaaGAAGACTGTAGGAGGGGATCGATATGAGGGTTGTCAGCTCAGGGGTAACATGTGCTTGGGCTCCTGCCCTTCATCTCCGATGAGGGAAGGGTGTGAGCCGGGCGTTATGGAGGAGACGGAAAAGGAGCACTTCAGGTTTGCCTGTTTAGTTCCTCCGTATTCTGTGAGGTCACAGCGGCAGGCGTTCTAGTGTCTTCACTCCTCCCCTGTGTTCTAATTCTAAAGCTGCTGGAGATCATTCTTTGATTATATTTTTTGCATTTTAACACTGTTTACTTATGAATGGGAAGTGTTGTGGGAGGATGAGTAGGGGTTTGTATACTTTCATCTGACCTGTTATTAAGGTGAatcaggtggtggtggttgggacAGAGGAACATGTTATACAGGAAATCTTTATGTATTCTTTATTATGTTCTGTTTCATCTCTACCAGTTGTCTTCATTCACAACCTGACAGTTCAAAGTCATTTGCCTCCAAAGGAAAGAAGAGGTCCCATAGGCAGAAGTGTCTCAGACAGAACATGTATAAAGGAATGTCAGCCTTTATGCAACTTCTATTTAGGTGTTGGAGTTTTTACCCTTTATTCTGTTGGTGTTTCTGCCCAGACATGTTTAGCTCGTTTCAGCTGCCAGCTGGCTCTAATTTCTGATTGAACCACCTTGCAGCGTAAAGTCTTGTAGTCAAAAAGGAGCTCTGTTGGCATAAAAATTCATTGTTAATATTTCATAATTACCTTGAAAAAAGCGTTGCTGGGGCCTCATACTGTAAGTCTCTTTTTCAGTGCTATGGTTTTCTCTTCTATAATTTTTTTGCCTTTTGACAGTTCACACAGGGCAATGTCAATGGTCGCGTTCCCCTGCTCAGAAGTTGGATGCATCAACAATGGTTGCGTGCATCCTCATCGACTGGTCAGgcaccagattgctataacataatGTGGTTAGCTGATGGGTAAAATACCTTTCTGGGCATTGTAAGATTTGGCATGCATAAGCAACGGCTGGGCAGAGGAACGCGCCCACTCTATTAGTCATAAGGATGCTATGCTATAGTGTGATGGTTGGAACCTGAGATGCCTTTTAACAGGAAAGCAATATTCTATGAATGGAGGTGGCTGAAACTCATTTCTCTCttgaaaacatacagtatatacaaagtGTTTTAATGTTTATAATAATGACTCTCCAGGATTGGTCAACTGTTTGATTTTTGTCTTTGAGTTCATTTGTTGTAtagaaataaatacattaatagATAAATTAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0015711 organic anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015355 secondary active monocarboxylate transmembrane transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1914502 lncRNA upstream 23744 21701071 ~ 21701804 (+) True G1673341
TU1914530 lncRNA upstream 43188 21676314 ~ 21682360 (+) True G1673369
TU1914529 lncRNA upstream 43562 21676025 ~ 21681986 (+) True G1673368
TU1914494 lncRNA upstream 102113 21623208 ~ 21623435 (+) True G1673334
TU1914493 lncRNA upstream 103867 21621451 ~ 21621681 (+) True G1673333
TU1914601 lncRNA downstream 75196 21804556 ~ 21804932 (+) True G1673434
TU1914560 lncRNA downstream 77549 21806909 ~ 21811368 (+) False tnrc6b
TU1914570 lncRNA downstream 83592 21812952 ~ 21813178 (+) False tnrc6b
TU1914563 lncRNA downstream 116596 21845956 ~ 21848439 (+) True tnrc6b
TU1914967 lncRNA downstream 123452 21852812 ~ 21853020 (+) True G1673748
XM_021575984.2 mRNA upstream 3992 21710511 ~ 21721556 (+) False cby1
XM_036955972.1 mRNA upstream 3992 21711292 ~ 21721556 (+) False cby1
XM_036955974.1 mRNA upstream 3992 21711326 ~ 21721556 (+) False cby1
XM_036955973.1 mRNA upstream 3992 21711345 ~ 21721556 (+) True cby1
XM_021575985.2 mRNA upstream 11660 21711292 ~ 21713888 (+) False cby1
XM_021575982.2 mRNA downstream 10600 21739960 ~ 21755576 (+) True sh3bp1
XM_036955975.1 mRNA downstream 77343 21806703 ~ 21848442 (+) False tnrc6b
XM_036955976.1 mRNA downstream 77343 21806703 ~ 21848442 (+) False tnrc6b
XM_036955977.1 mRNA downstream 77344 21806704 ~ 21848442 (+) False tnrc6b
XM_036955978.1 mRNA downstream 77345 21806705 ~ 21848442 (+) False tnrc6b
TU1914366 other upstream 275202 21444883 ~ 21450346 (+) False G1673231
TU1914367 other upstream 275202 21444883 ~ 21450346 (+) False G1673231
TU1914368 other upstream 275202 21444883 ~ 21450346 (+) False G1673231
TU1914369 other upstream 275202 21444883 ~ 21450346 (+) True G1673231
TU1914311 other upstream 288167 21423517 ~ 21437381 (+) True LOC110499100
TU1914569 other downstream 83885 21813245 ~ 21813826 (+) False tnrc6b
TU1914567 other downstream 104534 21833894 ~ 21845866 (+) False tnrc6b
TU1915004 other downstream 207282 21936642 ~ 21959627 (+) True LOC110513322
TU1916535 other downstream 1527444 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 1850670 23580030 ~ 23581387 (+) False faap100

Expression Profile