RNA id: XM_021575982.2


Basic Information

Item Value
RNA id XM_021575982.2
length 2976
RNA type mRNA
GC content 0.50
exon number 18
gene id sh3bp1
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21739960 ~ 21755576 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTCTCTTCGAGCTCTGTGTGACTGAGTGGCGGTTGAACACAGTCACAGAGCACATTTTCAAAACAAGAACGAATACTGCTGGATGACAGAACATCACACCAACAACACACACTGAAGAAAACCACTTGCAGTGGTGTCTGCTCAACGAAATAATACAGACACTGACTTGGCAACACATGACTGAGGACCTGGCTGGAGTCAAGACAGAGGGATAATTTGTAAGAGGCGGGCTGACTCCTATGCAACCATGCTGAAATCTTTCAACCTCTTGAAGCAGCTTGGCTCTGTGGGGAAGTCACAGGATGCCACAGATCTTCTCACAGAAGATCTGGTTATGGTGGAGCAGCGGGTGGAGCCAGCCAAGAAGGCAGCACAGGTTATTCACAAGAAGCTGCTGGGTTGTCTGCAGAGTCAACTAGGGCTGGACACAGAGAGAAGAATGaaaAAACTCCCTCTCATGCTGCTCTCTGTTAGCATGGCTGAGAGCTTTAAAGACTTTGATCCAGACTCTTCTATCAGGAAAGTATTGGAGATGTGTTGCTTCATGGAGAGTCATCTGGCCGCAACACTGTCTGACTTTGAGCTGAAGCTGGAGAAGGAGGTTTTGGAGCCTCTCAATAAACTCAGTGAGGAAGACCTTCCAGAGATTCTCAAAAACAAGAAGCAGTTTGCCAAACTCACAATGGACTGGCACAATGCACGCAACAAGTCCCAGGCTAGTACGGGACCTCAGGCAAAGCAGGATGGGctgaaagaggaggtggaggaggcctGGAGGAAACTGGAGAGCATCAAGGACCAATACTCTGCAGATCTGTATCACTTTGCCACTAAAGAAGATGACTATGCCAACTACTTCATTCGTCTGCTGGAACTACAAGCAGAACATCATAAGAATTCCCATGACTTCCTCGAACGAAACATCAGTGAGCTGAAAGACAGTCAAACAGACTCCCAGGAGAATAACTATAAGGGGAAGGTTTACGGGGAGCCCCTGCTGACTCATCTGTACAACAGCGGTAGGGAGATCGCTGTTCCCATCCAGGAGTGTGTTCACATGCTGCTGCACACCGGcatgagagaggagGGTCTGTTTCGTCTGGCAGCAGCAGCCTCGGTAGTGAAGAGACTGAAGAGCAGTCTGGATGGAGGGGTCGTGAACCACAGTGAATTCACTGACCCTCATGCAGTTGCAGGGGCTTTGAAAAGCTACCTGAGAGAGCTGCCTGAACCACTCATGACCTTTGAACTCTACAATGATTGGTTTCAAGCAGCAGGGGAGAAAGAATTGACAGACAAACTTGAGCAGTTTAAAATTGTGCTGAAGAAGTTACCATCAGAAAACTACAACAACCTCCGgTACCTGGTACAGTTCCTGTCGTGCCTGTCAGAGCAGCAGTCGGTTAACAGGATGAGTCCCAGTAACATTGCCATAGTACTGGGTCCCAACCTGCTGTGGCCTCGCATTGAGGGggAGGCAGCGCTGTTGGACATGGCATCTGCCTCCTCCGTCCAGGTGGTGGCGGTGGTTGAGCCTCTCATACAACACTCCAGCAGCCTGTTTCATGAAGAGGTGGACTTTGAGATTCCTGAGTTTCCTGGGGTCCCAGATTTGAAAATGTTAGAACCTCAAACTTCAGAGTCGGGGAAAGAGAACCTTGCCAGAAtgacctcctcctcttcatcatgcgcttcctcttcctcttctcatgCTTCTCTCTGTAAAACAATCAGCTCAGCATCTCAGGACAGTGGAGGTTTTTTCATCATTAAGTCAGGCTCCATTGGTCGTAGAACCACCACCTGGGGGAACCCTGCCTCAGACCCACCATGCTCAACCCCACTTAACCGTACCCCAGTCCATACCCAGAGCCCGTCCCCTGTCCCAAGCCCGACACTGGTCCACAACCCATCCCCACTACCCAGCCCCAAACTGGCACCTGGCCCAACCCTGGTTCCCTCCCCACCACCAGTGTCTGTCTGCAGTCCGACCCAGAAGCAGAGCCCTGAATCGGGCTCACTAGAACCCATCCTAGAGGCCCCACCGGACTCCCCCAGAGCTACACTGAAGATCACCTCACCATACAAACCGAGAAAATCCTTCCTTCAACACATGCCGCCCATCCAGAGTAAAGAGCAGGTGGCCGTTACATACTCCAAACCCAGGGCCCCAGCACCTCTAGCACCAGCAGAGACACCCAAAACCCAGCTACAACCTGCACCCAAGCCCCTTGCTCCAGTCCTGAAGAAGACCCTAAGCAAAAAGGGTGCAATTAGGCCACCCCAAATCCCACCTCCCAAGCCCCCAGTACTGGAAAGCAAACAGGTGACCTCTATAGCGCAGTGAGGGGGTAgagatacactatatactgtatacaaaagtatgtgaaccccttcaaattagtggatttggatatttcagccacacccatttgtttatgtgtaactctgtgttgtttttgttgcactgctttgctttatcttggccaggtcgcagttgtaaatgagaacttgttctcaactggcctacctggttaaataaaggtgaaatcaaataaaaatactgACAGGGTGTATACAATcaggcacacagccatgcaatctccattgtcaaacattgtcagtaaaatggccttactgaagagctcagtgactttcaacatggcctCGGATTCCACCTTTTCAACAAgccagttcatcaaatttctgccctgctagagctgcccggtcaactgtaagtgatgttattgcgaagtggaaacgtctaggagcaacaacggctcagccacgaattggtaggccacacaagctcacagaatgtgaCCGCTGAGTGCGGAAGCACGTAAGGCGtcaaaatcgtctgtccttggttgcaacactcactacagagttacaaactgcctctggaagcaacgtcagcacaataactgattgtcgggagcttcatgaaatgggtttcaatggccgagcagcca

Function

GO: NA

KEGG:

id description
K20652 SH3BP1, ARHGAP43; SH3-domain binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1914502 lncRNA upstream 38156 21701071 ~ 21701804 (+) True G1673341
TU1914530 lncRNA upstream 57600 21676314 ~ 21682360 (+) True G1673369
TU1914529 lncRNA upstream 57974 21676025 ~ 21681986 (+) True G1673368
TU1914494 lncRNA upstream 116525 21623208 ~ 21623435 (+) True G1673334
TU1914493 lncRNA upstream 118279 21621451 ~ 21621681 (+) True G1673333
TU1914601 lncRNA downstream 48980 21804556 ~ 21804932 (+) True G1673434
TU1914560 lncRNA downstream 51333 21806909 ~ 21811368 (+) False tnrc6b
TU1914570 lncRNA downstream 57376 21812952 ~ 21813178 (+) False tnrc6b
TU1914563 lncRNA downstream 90380 21845956 ~ 21848439 (+) True tnrc6b
TU1914967 lncRNA downstream 97236 21852812 ~ 21853020 (+) True G1673748
XM_021575983.2 mRNA upstream 10600 21725548 ~ 21729360 (+) True LOC110499089
XM_021575984.2 mRNA upstream 18404 21710511 ~ 21721556 (+) False cby1
XM_036955975.1 mRNA downstream 51127 21806703 ~ 21848442 (+) False tnrc6b
XM_036955976.1 mRNA downstream 51127 21806703 ~ 21848442 (+) False tnrc6b
XM_036955977.1 mRNA downstream 51128 21806704 ~ 21848442 (+) False tnrc6b
XM_036955978.1 mRNA downstream 51129 21806705 ~ 21848442 (+) False tnrc6b
XM_036955979.1 mRNA downstream 51130 21806706 ~ 21848442 (+) False tnrc6b
TU1914366 other upstream 289614 21444883 ~ 21450346 (+) False G1673231
TU1914367 other upstream 289614 21444883 ~ 21450346 (+) False G1673231
TU1914368 other upstream 289614 21444883 ~ 21450346 (+) False G1673231
TU1914369 other upstream 289614 21444883 ~ 21450346 (+) True G1673231
TU1914311 other upstream 302579 21423517 ~ 21437381 (+) True LOC110499100
TU1914569 other downstream 57669 21813245 ~ 21813826 (+) False tnrc6b
TU1914567 other downstream 78318 21833894 ~ 21845866 (+) False tnrc6b
TU1915004 other downstream 181066 21936642 ~ 21959627 (+) True LOC110513322
TU1916535 other downstream 1501228 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 1824454 23580030 ~ 23581387 (+) False faap100

Expression Profile