RNA id: XM_036955978.1


Basic Information

Item Value
RNA id XM_036955978.1
length 9308
RNA type mRNA
GC content 0.56
exon number 22
gene id tnrc6b
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21806703 ~ 21848442 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAACAGCACACAGTGTCCATACTTGATCAACCCATGACATTCATTAAAACTGGTATTTTATTTGACGAAGGAATTATTGTCTAACGGTAATGATGCTGTATGAAACTAACTCCACAGTTGTCTAATTGAAGGACAAAAATCTCCCTCACCCCCACCAGAGAGAGCTTGCTGCTGGCGAGACATTCGATTCATAGCTGCAAAATGGCCGACCGTCAACCAACTGACTTTCCAGCGCTTTAAAAACGAATTCTTCTGCACATTAGCTAGGTTTACATTATCATAGTACTTACTTAGAAATCAAGAGCACCAACAAGTATATTTCTTTGTTAGCCACATAACGTTACTTCATTATTCGTTTAGGGGCTGTTGATTTTCAAGTAGCCTCGAATGACAAAAAAACCCGAGGATTTCGCACTGAAGCACTTTAGCCACAGATGAAAGAGGAAATAATCTTAGCTTTAGTTAGCTAGCTCTATTTCATATGTGATTCCTGAGAAAAGAGTATCAGGACAGGGAACAGTAGTTCATGGAAGACAAGAAAAGGAAGAAAGACGACAAAAGGAAAAGGGAAGCATCTCAGAAGGTTGCAGAGCAAAAAAACAAAGTGCCAGAATTGACCAAGCCCTTGTCCACCCAGTCTCCTGCTGCCCCCAGCTCTGCTTCCCCCAGCCCTGGACCCACCCCCTCGGCATCCTCCTCCCCTGCCACCGCGGCTGCAGGCGGCACCCCCCCTCAGGGCGGGAACAATGCGAAGCGGCCGGCGGTGGCCAACGGACAGCCCCCCACAGCAGGCACCCAGGCCCCCCAGCGCTACATGCCCCGCGAAGTGCCCCCGCGATTCCGCTGCCAGCAAGACCACAAAGTGCTACTGAAGAGGGGCCAGCCGCCGCTGTCCTCCATGCTACTGGGTGGAGGGGGCGGAGGGGGAGACGGCCTCAACGCAACCATGGCTGCTGCCTCAGATTCCAGTCCAGGCTATGTGGGTCCAGCTGCACCCTCACTGCCCCTCACCTCATCATCCTCTTCATCATCAATCGCTGCTTCTTCTACTTCAAATTATGCAAATTCCACGTGGGGGACGGGCTCTGGCAGCCTGCCCTCCTCTCAGGGCAGGGAGAAGGTCATTGTGGACGGCTCGGACCTAGAGGAGTGGCCTAACATCGCCCCTGGCGACGGGAGTGGAGGAGGTGGAGCTTCAGGGCCAGGAAGCGGTAGTGAGTCGTCGGTGGAGGGCGGTGGTGGAATGCCGAACAGCTGTGCCTCATGGAAAGGTGGGGATCCTGGCAGTCCTTCACCCACTTCCTCGTTCTCAATGTCCAATGAATGTATGCTGTCCGGCAGTGTGGTGTGGGGGTCTGCTGCCTCACAGGGTCCTGTAGAAGGGAATGCAGCCCCAGGGACGTCATTGCCACCCATTCCCAAATCCTCCCCTCTGCCAGTGGGCCCTGATGGCTCGCTTGGTAGCAGTGGGGGGATCCCTGGTGCCAACTTCAACCCAAATGCCAACCCTTCTGCCTGGCCTGCCCTAGTGCAGCAGGATGGAGCTGGGGCAGCTTCCTCTGAAGGTGcccccccctcttccttcctccaGAGCCAGGTTGGGTCTCTGTCTGCCAACAACCCTCCCCCGGCCCTGGGGAACCCACCTCTAGCTTTGAATCAATCCGCTCATCAGCACCAACTTCACCAAATGCAATCCAGAGAAAGAGAGCACCCGTCGGACGGGGGCTGGGGTGGAGCGGCGCTGGAGACCGGAGCAGGACCAAAAAATGCGGGGACAGGGGAGGGAGCCAATATAGACTGTGGGGGAGGAGGCAACGGGGGAGACAACCTCTCTGCTTCCCAAACCTCTTCCTCCTGGGGAGGCCAGCCTTTCCCCGCTGCTAACTCCAAAACGGGTGCCTCAAGGACTGATGGTTGGGAAGGCGGGGCTGCTGAGGGTGGTGGAGGCTCGCGGTGGGGGTACAACGCTCAGGGGGGTAATGGAGGGAAAGCCTGGGGCGCTGGAAGTGGGGGTAACACTCAGACCGCCGGGGTATCTcagggagggtggggaggaggaggaggaggagagcgagggtcTTCAGTTGGAGACTGGGGAGGTAATTCAGGTGGGATGGGTGGAAGTGGTGGAGTTGGCAATTCAGGAGGGGAGGCTGGTGGTGTCGGCGGccgcagcagtagcagcagcagcagcggggGCAGCATCGGCAACCCCCCTGCCGCCGCCTCTTCTCCCAAATCATCCACCACTACAACAAGAGCTTTGGACAATCAGAAGGGAGTTGGAGTGGGGGACggagggacagagggggacacaggggagtggggggggggccGGGGTGGAAGAGGTCATTCTTCATCCAGCGGTGGAGGAAACTCCAGAGGTGGCGGCAATCACAATCAACACCATGGGTATGGCCACCACCGGTATTCCCATCCCCCACCACCCAACCCTGAAGTGGCCTTACAGGCAATGCTCAGCCGCAATGACCTGGACCCGCGCGTCCTCTCCAACACGGGTTGGGGCCAGACCCAGATCAGACAGAACGTGGCCTGGGACCTAGAACCAGGAAAAGGAGGTTCTGGGTTGTCTGCTTCATCCAAAAACTCTCCACCTCCCATTGGTCCGTCTTCTCAGTACTCCACTGGCTCTGCTACAACTACTGATTCTCCTTCCCTTCTCGCTGGCTCAGCTCCAAACCTGAACTCCAACCCTTCCCTGGGGACCTCTGGTGGCTCTGGGGAGGGCTGGGAGAGTGGTGGTAACAGCAGCAGCGGTTGCAGCAACTCCCTACCCAACCGAGGACCACCTCACCCGGGATCCAACATGAGGAATGTTTCTGGTGTCACACAATCTGCGTCAATGACCACTGGAGCAGgtatgggaggaggaggaggccttgGACCAGGCCAGGGGAAGCCTACAGGAGGCTGGGGTGGGCTAGGACCAGGGGAGAGCCAAGGAAAAGGATGGGGGAACGAAGGATCAgagtggggtggagggagggaacgtagtagtagaggaggtggtggaggaggaggctggggAGATAATGGACAACAGGGTAAccaaggtggaggaggaggtggtggctgGGGAGGCAGCCAGGAGGAGaaggggacaggaggaggatggaaggagatggggagggatggaggagggtgtggtggacagagggagaggggtgggggggactGGGGAGAGCGAGAGGCCAAATCAAGCAGTGGAGGAGGAGcatggggagaggaaaggaaaggtggGGGAGACTCAGAAGTCGGTACGTGGGGTAGCTGGGACGAGGGAGCCCCTAGGAGAGCCTGGGGGGCAGGAGGTACATGTGGAGGAGGGGCAGGTGTGGACATGGGGGGCAGCAAACCCCACCAGGGGCgttggggtggaggggggggtggGAAAATGCACCCGTCACAGATGCCAAACAGCCAGACAGCCTCTGTGAAAGGCCCCATGGCACAAAAGCAGCAGCACCAATCACAGCCCCAGCAGCAGCCGCTACCGCAGCAAGCACTGGACCCAGGGGACATGCAAGGAGGAGAGGGCTGGGGGAGACCATCGGGCCCCCAGGCCCAAAACCAAAGCAGCTCAGGCTGGACGGCCGGACCCATCCCCAGCGGTCCTAACGGAGGAGAGGGGCCGCAGTCCAGCGGTTGGGAGGAACCTTCACCACAATTCATTAGCAGGAAGATGGACATTGACGATGGGACGTCGGCTTGGGGAGACCCCAGCCAGTTTAATAACAAGACTGTCAACCTGTGGGAGAAGAACGGCGTTCCCGCTGGTCAGCAGCTGCCAATGCACGGCCAGGGACCAGGACCACCGCCCCAACAGCAGCAGCCTGGGCCTCCAGCTCTACAGCAGCAACCTGGGCCTGGGAGGCAGCCCACTGGGATGGGAGGCAGGGACATCAACCCTGGCCATGGACCTGGACCTGGGAAAGCTCCAGGGATGGCTCCATCGTCTGGCTGGGACGGTGGCTCTCCCTCAGACCCCCCGGTGGACAACGGCACTGCAGCCTGGGGGAAGCCCACTGAGACCCCCACCGGCTGGGGAGACCCTGGGGAGGAACCTGGGAAGAACACCTCTGGCTGGGGAAACCCCTCACCCAACCCCATCAAATCTGCAGGTTCAAAGTCTATGCAAGAAGGAGGCTGGGGTGAGGGAGACCAGGGCTCGGTGGCGGCCTCGCGTCACCCcagctgggaggaagaggaggagggaggagcaggGGTGTGGAACAGTGTTGGATCCCAGGGCAGCAGCTCGTCCTACAACAGTGGGGGCTGGGGCCAAGGTCACGGGGGCAAGAAGCCCAACAACAAGGCTCCCCtgaagagtggaggaggagactccTGGATGAACCCCATGAACAAACAATTCTCCAACATGGGGCTCCTGGGTGATGATCCTAGTGGGCGGCCTCTGGACTTGGCCCCTGGTCCTCCTCAGGATAagaagatggaaggagagaagCGAGGGATGGGCCTGAATGACTACAATGGAGAGATGCGTAAAGGAGGGCAGAGAGCcatgggaggaggagggatggtcTACCGTTCACCTGGTTCCAAAGAGATGGGGCCTGGCGACCCTGGGCCTTACTATGACAAGCAGACCTTGCCTTTCACCAATCAGGATGGGTGCCTTGGGGAGGAGTACTCTCCACCCTCTGTCTACAAGCCCTCCCCCCTCTACAACCACACTATCCCCCCTAGACAAGGTGGTCATAACATGTTTGGCAGCAGCGGTGGTGGGATGCCCCCGTCCAGACACCAGCCCGGTGTGCCACCCATAAACCCGTCCGCAGGGATACGAGCACAAGTGCCTCATCAGTTCCTGTCACCTCAGGTGCCAGGTTCTGTGCTGAAGCAGATGCCGCCTCCCAGCGTGGGTGGAGTCGGAGgtgtgggtggggtgggggcTGTAGGAGGGGGCGTGTTCCCCCCTCAGCTGTCCCCCCAGCACATCGCCATGCTGAGCAGCATCTACCCTCCGCACATCCAGTTCCAGCTGGCCTGCCAGCTCCtcctccagcagcagcagcagaacccCCAGCAGCAACAGCTCACCTCACCACAGCAGCTCCAACAGCTCTTACAGAACCAGAGGAAGTTCCCCCAAAACCCACGCCAGCAGGCCGACCCACAACAGctggCCAGGATCGTGGCTATTCTCCAGCAGCAgaggcaacagcagcagcagcagcagggcgtCGGTGGGGTGGGAGTGGGCTCCAAACTGTCCCCCTCTCACCTGGGAGGGGGAGGCCCAAAACTGCCTATGGCAGACTCCCTGCCCCATCCAGGCATGGGGGGCTCTCTGGACCTGCACCAGAAAACACAGGGCTACTCTGGGTACAGTGGAGGAGTGAACATGTCTGGTCTGGACATGGGGGGCTCGGTGGTGGGGGGCCCAGGGGGCATGAAGGACGTGGGGGGGCAGCAATCCCGCTTCAAATGGATGATGGAGGGTCACTCTCCTGCCCCTTCCCTTCCTGAGACCCTCCACAAAAACGgtCCTATGTCCACCCCTATGAGGAGGGGGGGCTCGCCATATTCCCAGTATGACatgatgggaggggaggggctagGTATGCCCACACAGGGGGACAACTGGCACCGTACTCCTGGGAACAAGATGGGCTCCAAGCCCCAGGGCACGTCCAGCTGGCCTCCTGAGTTCCAGCCCGGCGTGCCCTGGAAAGGGATCCAGAGCATCGACCCCGAGTCTGATCCCTACATGACCCCAGGGAGCATGATGGGAATCCCTGGGCCGTCCAGCCTCAACGACACAGAGCACCAGTTGCTAAGAGACAACACAGAACCCAACCCCTCCCTGAACACCTTGCTGCCTTCACCTGGTGCCTGGCCCTACAGTGCCTCAGACAGCCCCCTCAACAACGCACACAACTCAGCAAATTACACAGAGTATAAGACCAGCTGGCCCCCTGAGCCCATTGGACACAACAAGATGTGGAAGACCAATCGCAACCAACAGTCCCAGCAGCTGCCACGCCCACCCCCGGGACTCACCAATCAGAAGCAGGCCTCGCCGTCCCGTGGCCCGTGGCAGGCCCGTGGCTGGGGCAGCTCGAGTGGGATCCAGGAAACCAGATATGGCCCTGCAGGCTCTGCTTGGAGTGATGGGGGGACCTCCAGAGGAAGCTGCTGGCTGGTGCTCTGCAACCTCActccacagATTGACGGCTCCACCCTCCGTACCATCTGTATGCAGCATGGCCCCCTGCTGACCTTTCACCTCGGCCTGACCCAGGGCAGTGCTCTGATTCGCTACAGCACCCCACAGGAAGCAGCAAAGGCCCAGAGCGCACTACACATgtgtgtcCTGGGCAATACCACCATCTTGGCCAAGTTTGTGAGCGAAGAGGAGGTCGCTCGCTATTTTGCACATTCCCAGGCGGGAGGGGCAGGGTCCAGCGGAGCAGCCGGGGCCCCAGGATCCAGCGGAGGCCAGGGGGGCCCCACAGGGACAGGTGCCATGGGGGCCAACAGCAGCGGGGAGAGGGAACGAGACAGAaccagagaaggagagggatctGCCCCTGGAGGAGGAGGTAACGGAGGGGGAGGAGGCAGCTCGGGGCCTGTCAGCTCTGGCTGGCAGAGTTTAGACGGTACAGGAGGCTCCCTGGATCCTACCCCCACCCAGGGGGCCGGCCTGAGTATGTTTGCCCAGTGGAGCAGCAACGGTtctgggggaggaggggtggctGGGGGTGTAGAGCCCGGCAGACAGGGTTTgtggggagggatggggggtgGAGGGTACCCCAGCAGTAGTATGTGGGGGTCCCCTGCCATGGAGGATCGACACCAGATGGGGAGTCCTGCTGCTTTGCTGCCTGGAGACCTGCTAGGAGGAGGGGCTGATTCGATCTGAATGACCACACCTAATACATGAACGCATACATTACGAAAAAACATGCACTTACACAAGTTCTACCACACACACCCAGTGGCCAGTATATTAGGTACATTCATCTAGTACCGGGTCaaacccccctttgcctccagaattcttcggggcatggaaacgttgctcaattggtatctagggacctaacgtgtgccaggaaaacattcccccaccattacaccaccagcctgtactgttgacaccaggcaggatggggccatggactcatgctgcttacaccAGATCCTGACTGCCCTCAGCATGACACAACAGGAACCAGGATTCGTTGGACCAGGcgattgtccagtgttggtgaccgTGTgtccactggagccgcttcttcttgtttttagctgataggagtggaacccagtgTGGTAGTCTGATGCAATAGCCCATCAGTGACAAGGACCAACGAGTTGTctgttccgagatgccgttctgcacaccagtGTTGTACTGCTCCATTATTTCCCTGTTtatggcccgcctgttagcttgcacttctcttgccattctccttcgacctctcatcaatgagctgttttcacccacaggactgctgctgactggatgtttttagTTTGTCGCTCCATTCTCACTAAACCCTAGACAGTGTTGTGCGTGAAAAGTACAGGAGgcttctgagatactggaaccggtaCACCTAGCACCGACAATCAGGTCTAAGGTCACTTGTTTTTCCCATTCTagcgttcaatcgaacagtaactggaATGCCTTGATGCCCGTCTGCCTGCTATATATAGCcagccacggccacgtgacttactgtctgtaggagcaaGCCCTTTTCGGGAACGAGCTGGTGTAACttataaactggccactgagtgtgcATATACGTTAACACACCGATGAAATGAGTTAATACTACACTGGTCACAAACATGCAGGTCCACTGATGCTAACTGTCACACATTATGTCACGAATAGACGGTGACATGCCAACACTACCCGCACACaaaatctctcacacacacacacacatacattcgcACACCTTTTACCTTTAAATGAAGACTTCAACAGCAAGACTTGAACCGACAGAGGTGGAATCTGTTGGACTGACAGACTCACCTGGATGACTCCTCTTTCTACACCCATGTAATAGAAAAACAGAACTCACACTGAGCATACTGAGCCCCTATCACTCAGGCATGCCCTGTAGAGGAACTAACAACGTGACAACACATGGAGGTCTTCCTATGTGATGTGTAACAACTTATTACAACAACTCTGTACTACACAAACCTACAGGACGTTACAGCGCCGGGCCAGTTGGGCTTACAGTACCTACCTGACCCAACCCGTTCTGACATTCGGAATCAccttctctccatttctcacCAGTTACACACTGCTCTGATGTTTAACAAGCAAAAATGTATCTTCTTGTATGTCATTTTTTTTcctgtttgtaaaaaaaaaatgtggaacaGTGGAAAAATCCAAGATgtctttctttttgtttttccttcaAAATGCTGACCTCGTTCTATATTTTTTCTTACTCAATCAAGTTGGTTATTATGTCATGATGATCACTTATTACTAGCTGTACAATGTTCcctcctgcctgcctgtgtgaaTGTGCTAGGCGTGACGGTATGTTGATGATGATATTGTGAGGCTGTGGGCGCAGTCCACAGCTAAGGAGAAGCGATGCAACAACCAACGGTTGCGTGCCACGTCATCGACTGACAAATTGCTATAACCATTTGATGTGGTTAGCGGATACAACGCCTGAATAGGTATTTTAAGtaaggtctgtctgtcttcagcAACGTCTAAGCATAGGAACGCGCCCTGTGTTTGTCGTTGCCGTGGTGAATGTGTTTTTGTCAAAGAGATTCATTCATGATTAACAAGTGGATTCATGATTAACAAGCGAGTGATTgtgagatagtgtgtgtgtgtctgcaaacACTTGGTAGGCGGACATTTTTTACATCAGGTGTTCCGTGTGTATGTACTtgatgcaggtgtgtgtgtggaaagtTCAAGAACATAGGCACTAATGCATATTTCTCTTAAGTTGTGGTTTTAGCagaaatataatttttttgtcTGAATTGcagtaatattttttttaaagaagcaaACAACTGAAGGCAATTATATTAAGATGCCAAAACCTACCATACCAAGCTGAGCTGGAGCGGTGTTTTGCAAACACGTTAAAGTTaccaattgttttatttttttgttgtgtatcaatttaaattaAGGCGGGCTTTATCACTCCTGTTCAGgttctttttgtttgttttcagatttgacaaaGGAGATAATTAATTTAAGCAAACACAATAAAGGTTGAATTCAACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1914601 lncRNA upstream 1773 21804556 ~ 21804932 (+) True G1673434
TU1914502 lncRNA upstream 104901 21701071 ~ 21701804 (+) True G1673341
TU1914530 lncRNA upstream 124345 21676314 ~ 21682360 (+) True G1673369
TU1914529 lncRNA upstream 124719 21676025 ~ 21681986 (+) True G1673368
TU1914494 lncRNA upstream 183270 21623208 ~ 21623435 (+) True G1673334
TU1914967 lncRNA downstream 4370 21852812 ~ 21853020 (+) True G1673748
TU1914968 lncRNA downstream 4638 21853080 ~ 21853290 (+) True G1673749
TU1914970 lncRNA downstream 5242 21853684 ~ 21853930 (+) True G1673751
TU1914978 lncRNA downstream 11494 21859936 ~ 21860156 (+) True G1673759
TU1914984 lncRNA downstream 15145 21863587 ~ 21863816 (+) True G1673765
XM_021575982.2 mRNA upstream 51129 21739960 ~ 21755576 (+) True sh3bp1
XM_021575983.2 mRNA upstream 77345 21725548 ~ 21729360 (+) True LOC110499089
XM_036955972.1 mRNA upstream 85149 21711292 ~ 21721556 (+) False cby1
XM_036955980.1 mRNA downstream 19392 21867834 ~ 21876459 (+) True LOC110499080
XM_021575967.2 mRNA downstream 28433 21876875 ~ 21894557 (+) False tmem184ba
XM_021575964.2 mRNA downstream 28472 21876914 ~ 21894557 (+) False tmem184ba
XM_021575965.2 mRNA downstream 28472 21876914 ~ 21894557 (+) False tmem184ba
XM_021575966.2 mRNA downstream 28472 21876914 ~ 21894557 (+) False tmem184ba
TU1914366 other upstream 356359 21444883 ~ 21450346 (+) False G1673231
TU1914367 other upstream 356359 21444883 ~ 21450346 (+) False G1673231
TU1914368 other upstream 356359 21444883 ~ 21450346 (+) False G1673231
TU1914369 other upstream 356359 21444883 ~ 21450346 (+) True G1673231
TU1914311 other upstream 369324 21423517 ~ 21437381 (+) True LOC110499100
TU1915004 other downstream 88200 21936642 ~ 21959627 (+) True LOC110513322
TU1916535 other downstream 1408362 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 1731588 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 1731695 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 1731695 23580137 ~ 23581432 (+) False faap100

Expression Profile