RNA id: TU1914567



Basic Information


Item Value
RNA id TU1914567
length 1099
RNA type TUCP
GC content 0.62
exon number 7
gene id tnrc6b
representative False

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21806703 ~ 21848442 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ACTGGCACCGTACTCCTGGGAACAAGATGGGCTCCAAGCCCCAGGGCACGTCCAGCTGGCCTCCTGAGTTCCAGCCCGGCGTGCCCTGGAAAGGGATCCAGAGCATCGACCCCGAGTCTGATCCCTACATGACCCCAGGGAGCATGATGGGAATCCCTGGGCCGTCCAGCCTCAACGACACAGAGCACCAGTTGCTAAGAGACAACACAGAACCCAACCCCTCCCTGAACACCTTGCTGCCTTCACCTGGTGCCTGGCCCTACAGTGCCTCAGACAGCCCCCTCAACAACGCACACAACTCAGCAAATTACACAGAGTATAAGACCAGCTGGCCCCCTGAGCCCATTGGACACAACAAGATGTGGAAGACCAATCGCAACCAACAGTCCCAGCAGCTGCCACGCCCACCCCCGGGACTCACCAATCAGAAGCAGGCCTCGCCGTCCCGTGGCCCGTGGCAGGCCCGTGGCTGGGGCAGCTCGAGTGGGATCCAGGAAACCAGATATGGCCCTGGCTCTGCTTGGAGTGATGGGGGGACCTCCAGAGGAAGCTGCTGGCTGGTGCTCTGCAACCTCActccacagATTGACGGCTCCACCCTCCGTACCATCTGTATGCAGCATGGCCCCCTGCTGACCTTTCACCTCGGCCTGACCCAGGGCAGTGCTCTGATTCGCTACAGCACCCCACAGGAAGCAGCAAAGGCCCAGAGCGCACTACACATgtgtgtcCTGGGCAATACCACCATCTTGGCCAAGTTTGTGAGCGAAGAGGAGGTCGCTCGCTATTTTGCACATTCCCAGGCGGGAGGGGCAGGGTCCAGCGGAGCAGCCGGGGCCCCAGGATCCAGCGGAGGCCAGGGGGGCCCCACAGGGACAGGTGCCATGGGGGCCAACAGCAGCGGGGAGAGGGAACGAGACAGAaccagagaaggagagggatctGCCCCTGGAGGAGGAGGTAACGGAGGGGGAGGAGGCAGCTCGGGGCCTGTCAGCTCTGGCTGGCAGAGTTTAGACGGTACAGGAGGCTCCCTGGATCCTACCCCCACCCAGGGGGCCGGCCTGAGTATGTTTGCCCAGTGGAGCAGCAACGGTtc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1914570 lncRNA upstream 20716 21812952 ~ 21813178 (+) False tnrc6b
TU1914560 lncRNA upstream 22526 21806909 ~ 21811368 (+) False tnrc6b
TU1914601 lncRNA upstream 28962 21804556 ~ 21804932 (+) True G1673434
TU1914502 lncRNA upstream 132090 21701071 ~ 21701804 (+) True G1673341
TU1914530 lncRNA upstream 151534 21676314 ~ 21682360 (+) True G1673369
TU1914563 lncRNA downstream 90 21845956 ~ 21848439 (+) True tnrc6b
TU1914967 lncRNA downstream 6946 21852812 ~ 21853020 (+) True G1673748
TU1914968 lncRNA downstream 7214 21853080 ~ 21853290 (+) True G1673749
TU1914970 lncRNA downstream 7818 21853684 ~ 21853930 (+) True G1673751
TU1914978 lncRNA downstream 14070 21859936 ~ 21860156 (+) True G1673759
XM_021575982.2 mRNA upstream 78318 21739960 ~ 21755576 (+) True sh3bp1
XM_021575983.2 mRNA upstream 104534 21725548 ~ 21729360 (+) True LOC110499089
XM_036955972.1 mRNA upstream 112338 21711292 ~ 21721556 (+) False cby1
XM_036955980.1 mRNA downstream 21968 21867834 ~ 21876459 (+) True LOC110499080
XM_021575967.2 mRNA downstream 31009 21876875 ~ 21894557 (+) False tmem184ba
XM_021575964.2 mRNA downstream 31048 21876914 ~ 21894557 (+) False tmem184ba
XM_021575965.2 mRNA downstream 31048 21876914 ~ 21894557 (+) False tmem184ba
XM_021575966.2 mRNA downstream 31048 21876914 ~ 21894557 (+) False tmem184ba
TU1914569 other upstream 20068 21813245 ~ 21813826 (+) False tnrc6b
TU1914366 other upstream 383548 21444883 ~ 21450346 (+) False G1673231
TU1914367 other upstream 383548 21444883 ~ 21450346 (+) False G1673231
TU1914368 other upstream 383548 21444883 ~ 21450346 (+) False G1673231
TU1914369 other upstream 383548 21444883 ~ 21450346 (+) True G1673231
TU1915004 other downstream 90776 21936642 ~ 21959627 (+) True LOC110513322
TU1916535 other downstream 1410938 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 1734164 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 1734271 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 1734271 23580137 ~ 23581432 (+) False faap100

Expression Profile