RNA id: XM_021575964.2


Basic Information

Item Value
RNA id XM_021575964.2
length 3834
RNA type mRNA
GC content 0.45
exon number 10
gene id tmem184ba
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21876875 ~ 21894557 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATCATTCGAGAGAACCTACGGAGAGTACCAATGTAGCTAATCCTAGAAGATAGGGTCTGTTACAAACGCCGAGGTAGgaaaaaggagagaaaggaaTGACGGAGTTTATAGAACAGGACAAAACTGATATTTTACCTGTATTGTTCATAACGGAATGAAGAAAGGACCAAGGCACACTAAAATGAGATTAAAACCTTAAACTGAGATTTTTAAAAACGGATTTAACTCTTGGTTAGAATTCAAAGATTTCCAATCGAGCAGGACTGGAAAATAAACATGGATGTCGAAGTAACGATCGCAGTTTTGtggaattaaatacatttttctctcatttcttgctttaaaactgcactcGCCGACTAAAGTTTGTTCAGAAACCATCAATTGATGAAAGACAGACGTCATCTTGATTCAAGTTTACCTATAGATAATCGACTGCAAAGATGAGTCGTCTGTGGAGGCGTGACGTGCCCCTGTCTGAACGACTAGGTGTTGGTGTTGGAGAGGAATACCCCCTGGGTGGGGCCCCTGGTCCCCCTCCCACCATGGACTCCCCGGGCCCCAACATCTCCTGGTTCCCAGAGACCCCCCTGCTGACCCTGGACCAGCCCACCTTCCTGATGACCCCCGCTGCCCAGGCAGTGTCGGGCTTCTTCGTCTGGACTGCCCTGCTCTTCACCTGTCACCAGATCTACATGCACCTGCGGTACTACAGTTCTCCTAATGAGCAGAGACACATCGTGCGGATTCTCTTCATCGTGCCCATCTATGCTTTTGACTCCTGGCTCAGCCTCCTCTTCTTCACTAACGAGGAGTACTACGTCTACTTTGACACCGTCCGGGACTGCTACGAGGCGTTTGTCATCTATAACTTCCTGAGCCTGTGTTATGAGTACCTGGGAGGAGAGAGCGCCATCATGGCTGAGATCAGAGGAAAACCTATCGAGTCCAGTTGTATGTATGGTACGTGCTGTCTCTGGGGGAGGAGTTACTCCATTGGGTTCCTGCGGTTCTGTAAGCAGGCCACGCTACAGTTCTGTGTGATCAAACCCCTCATGGCTGTGGTCACAGTCATCCTGCAGGCCTTTGGAAAGTACCGTGATGGAGACTTCAATGTGAACAGTGGGTACTTGTATGTGTCCATCGTCTACAACATCTCAGTCAGCCTGTCTCTCTACGCCCTCTTCCTCTTCTATTTCTCCACCCGGGATCTGCTCAGCCCCTACAGACCCTTGCTCAAATTCTTCATGGTCAAATCTGTCATATTCCTCTCTTTCTGGCAGGGCATGTTGCTGGCCATCCTAGAGAAGTGTGGGGCCATCCCCAAAATCAACTCACCCGAGGTGTCAGTGGGAGAGGGAACGGTTGCCGCCGGTTACCAGAACTTCATCGTCTGCATCGAGATGTTCTTTGCCTCCCTGGCCCTGCGTCATGCCTTCACATACAAGGTCTACATGGACAAGaggctggactctctctctcaggGCCCAGTTCCTATATATGGAGAGTATGGTCGCTGTGCCCCCATGAAGAGCATCTCCAGCAGCCTGAAGGAGACAATGAACCCTGGAGACATGGTCCAAGATGCTATTCATAACTTCTCCCCGGCCTACCAGCAGTACACCCAGCAGTCCACCCTGGAACAGGGTCACTCTGCCCCGCCTGTGTCCCGCACACACAGCACCATCAGCACCCGCGACAATGAGAAGACTCTGCTGCTCAGCTCGGACGATGAGTTCTAAGTTAAAACACACCAATCCCAGCCAATCACCTCTTTACTGACTGTTGCGGTAAGGTACTACCCCCTGGTCTTCCTCATGTAGTACATGTCTTATGGAGGATTGGCAGGGGATGTAAGGTGTGTTAGGGGTTGGTACGTCAATACAGGACCATGTGACTTAGCCTGGTCCATTTTAATATGCTCTACTACACACATACTATTTGCACAAAATCAGGACTATACAGGAACTATTGATAGAGCACACACTTAGTGGGAACATGCTGAGGTACATTTTGGTGGAAACCATTGTCTAGAAAAAAAACTTATAGGAATTTGAGGATTTTCTGAGACAGAATTGTACACTTATTAGAGATTTTATTTGGTGTTTGGATAAAATGGATTGTATGGTTAAAAAATGTGTGTGCTTATTAGCTAACATCCCCTGAAGAAGACAGCCCATACCAGGTTGATATTAGAGTACTCTAGCTATGTGTGGCATTTGATTTGGCTTATTGGTTTTTAGTTTTAAGACCAGGCCATTCTCAGAGCTCTGTGGTGGCCATGTTTACAGTGGGTTTTAAATGGACGGTGTGAGGGGGTGGTTTAGGGCAGAAGCAGCTCTGTGGACTGGAGAATGGTGGTGTTGTCATTGATTCACTAGGGAcatgggatggatgggggatgtgAGGGGAGGGCAGGGATAGTGGTTGGTTGGACAGCACTTGATCAGATTACAGATGAAGAGAGACCTGCTCCAGTGTGTAGCAGACAGGCAGGGTGAGGGCAATCGAGCAGCATGGTAGTCTGGATTATACTGTTGTAATTGGGGCATTATTCGTATGGTGAGGATTAGGCCATGCTCTAATCCAGCAAGGCTCATTCTGCCAACCGACCTCTCCTGGCCTCTAATGTATGTTAGGAAAAACACCTTTAGTGATATCTGTGCGATCAGAGTACGTAGACACCGCAGGAATATAGGTAAATGCTATTTTTAAATACTTACAATTCCAGTTGGACAATCTCAGGCAAAAAACGTGTAACTGgatgcaaaaaaacaacaacaaaagattCAGCTTTGTAATGAAGTGTGGGTCAATTTTAGACTGACTTTTAGTGTCGTATAGACGTTTCCATTACACAGAAGTGGACGTTAAGTGCTTACAGAGAAAAGGTATTGCGTTATACATAGTTTAGCTTTGAGGTTATTGTAGTGAGTCATACGGACAGGCTTCCATTATACAGTAAAGTCATAGTGAGTCACTGCTGCTCCATGCTCAATCCTGCCACCAGAGAGCAGCAAGGAGTCTATTATATTTGGTCAatttatagacacacacacccttatcTATCAAACACAGACCGATCATGGTCACACATTATGTTTGTAGCCTACACATTCTGTCTGCTAGAGAAAGGAATGCTTTATCTTAGTGGAGTCCCAGCCTCAGTCTATGCTGACCCCTCCCTCAACTTATACTGTGTGTGAGACAGCTAGGCCCTATACATGTAGGCAAGACATTGTCCAGAGAGGCTAGTAACTATTCGGGGTGTCAATATTTCCCATTAAAGTATAGTCAGAATGTCTGCGTTATTTATATTGTTGAGGCCAGTATGTACCGTGTTCTGGAACCACACTTATTATGGTTTGTCTACTGTAGCATTCTGTTGAATCCTTTGCCATGTTGAATAAATTATGAGGGTTTGGCCTCATCCCCAAACATTTCCAGTTTCTGGTACAAAGAGAAAGTCACCACAAGATCATTCTCCAGTTCTTCTTTTTCTGATATCttctctctctgcgctctcttTATCTAGGCCTAGGGTGTATTTTGAGATGTATAAGACTATTATTGCTAGACATAATATGATGTACATACAGTTTGAAATGATATACTGGAGAAATATTTAGTGATGTTGATGTAATAATGACAATGATGTAAAACTCTGATTAAAAAGGCTTAGTTTTGTACTGTCGCTCCATAAACCAtttagaaaatgtttttgatgacTGCTTTCTTTTGTCTAGTTCTTTTGTATTTTGTCAAAGCTGCTGATATGCTCCTATTTTTAGTCTAAATGAAATTCAGACAAAATAAAGATATTTAGTCTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1914987 lncRNA upstream 10819 21865886 ~ 21866095 (+) True G1673768
TU1914985 lncRNA upstream 12232 21864483 ~ 21864682 (+) True G1673766
TU1914984 lncRNA upstream 13098 21863587 ~ 21863816 (+) True G1673765
TU1914978 lncRNA upstream 16758 21859936 ~ 21860156 (+) True G1673759
TU1914970 lncRNA upstream 22984 21853684 ~ 21853930 (+) True G1673751
TU1914999 lncRNA downstream 2208 21896765 ~ 21900182 (+) False G1673775
TU1915000 lncRNA downstream 2208 21896765 ~ 21897605 (+) False G1673775
TU1915001 lncRNA downstream 2253 21896810 ~ 21897605 (+) False G1673775
TU1915002 lncRNA downstream 2253 21896810 ~ 21900182 (+) True G1673775
TU1915005 lncRNA downstream 7310 21901867 ~ 21902080 (+) True G1673778
XM_036955980.1 mRNA upstream 455 21867834 ~ 21876459 (+) True LOC110499080
XM_036955976.1 mRNA upstream 28472 21806703 ~ 21848442 (+) False tnrc6b
XM_021575975.2 mRNA downstream 8048 21902605 ~ 21907221 (+) True tomm22
XM_021575970.2 mRNA downstream 13060 21907617 ~ 21919609 (+) False dmc1
XM_021575971.2 mRNA downstream 13060 21907617 ~ 21919609 (+) True dmc1
XM_021575976.2 mRNA downstream 30268 21924825 ~ 21936465 (+) True gspt1
XR_005037961.1 mRNA downstream 42033 21936590 ~ 21945117 (+) False LOC110513322
TU1914567 other upstream 31048 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 63088 21813245 ~ 21813826 (+) False tnrc6b
TU1914367 other upstream 426568 21444883 ~ 21450346 (+) False G1673231
TU1915004 other downstream 42085 21936642 ~ 21959627 (+) True LOC110513322
TU1916535 other downstream 1362247 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 1685473 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 1685580 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 1685580 23580137 ~ 23581432 (+) False faap100

Expression Profile