RNA id: XM_021575970.2


Basic Information

Item Value
RNA id XM_021575970.2
length 1832
RNA type mRNA
GC content 0.45
exon number 13
gene id dmc1
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21907617 ~ 21919609 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTACAGATAAATGCTACAAATTGACTGTGGCTTTTGTGCATCAAGATCAGTCACTACCAAAGATTGTTGCTGAGGAGATTGACATTTCACTTGATTGTTGCTGATGAGAGCATCTCGGTGTAAAGTTTGACATTTCACTTGATTGTTGCTGAGGAGAGCATCTCGCGTGTACAGTTTGACATTTCACTTGATTGTTGCTGAGGAGAGCCTCTCCTGAGTAACTTTTATGATTGACAGCTCTCAACTTTCAGCACGAGCGTCAAACATTCCCGCCACCTCAAGAAGAAATCAGGTGGCAAGTAATTTTTCATCTTGATAAGGTCATCATTAGCTTTGCAACATTTTACAGGGTTGTGAAGTTAGTGAAAGAAGCAACCTCATTCTGTAGATGTTGATAACATCTTTCAGGAGCTATAGCTGACGTTGGGTAGCTAACAGATCGCTTGCTGACATCGCAAGAAATGTTATTTCCTCTGCCCCATTTATTAACTGGTagcttataacgttagctagcagctAGCTcgctgaaacaaaacaaaaaacatctaGTTCAAGAGCTAACGTTACTAGTAGCTAACTACATTGCGCTAATCAAGATGAAAGCAGCCGAGGATCAAGTTGTGGAGGATGAGGTCGGATATCAAGATGatgagGAGTCATTTTTCCAAGACATAGATACCCTACAGAAGCATGGAATTAACATGGCAGATTTAAAGAAGCTGAAGTCTGTGGGTATCTGCACAGTAAAGGGGATCCAGATGACCACACGCAGAGCCCTGTGTAACATCAAGGGCCTTTCAGAAGCAAAGGTGGACAAGATCAAAGAGGCTGCTGGGAAAATTCTGACCAATGGTTTCCTGACAGCATTTGAATATAGTGCGAAGAGGAAACAAGTGTTCCACGTCATGACTGGAAGCCTGGAGTTTGATAAACTACTTGGGGGAGGTATGGAGAGCATGGCAATCACTGAGGCATTTGGAGAGTTTCGGACAGGCAAGACTCAGCTCTCTCATACACTATGTGTCACAGCCCAACTTCCTGGAGAGGATGGCTACACAGGAGGAAAAGTCATCTTCATCGACACAGAGAACACCTTTCGTCCAGACAGACTGAAGGACATAGCAGACAGGTTCAATGTTGACCATGATGCTGTGCTGGACAATGTGTTATACGCCCGAGCCTACACCAGTGAACACCAGATGGAGCTGTTGGATTTTGTGGCAGCCAAATTCCACGAGGAGGGTGGCGTCTTCAAACTTCTGATCATAGACTCCATCATGGCTCTGTTCCGGGTAGATTTCTCTGGCCGAGGGGAGCTGGCAGAGAGACAGCAGAAGCTGGCCCAGATGCTCTCCCGTCTGCAGAAGATCTCTGAAGAGTACAACGTTGCAGTGTTTGTCACCAACCAGATGACTGCAGACCCTGGAGCTGGGATGACGTTCCAAGCTGATCCCAAGAAGCCGATTGGAGGGCACATCCTGGCGCATGCGTCCACCACACGAATCAGCTTGAGGAAGGGACGCGGAGAGTTGAGAATTGCCAAGATATTTGACAGTCCTGATATGCCTGAGAACGAGGCCACTTTCGCCATCACTCCAGGGGGAATTGCTGATGCCAAAGAGTGAAAGACCCTCATGGATTTACCAGTAAAGGAGAGGAAGCACATACAGTTCTAGGCAGTTTTTAGAAAATCGTAATTTTTTGAATTCTGATGAAGACTATTTGTACTATTTGGTgtttatatgtacagtgccttcagaaagtatttatatccCTAgactttccccacattttgttgtgttacaaattgtgattaaaatatatttaattga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1915005 lncRNA upstream 5537 21901867 ~ 21902080 (+) True G1673778
TU1914999 lncRNA upstream 7435 21896765 ~ 21900182 (+) False G1673775
TU1915024 lncRNA downstream 24419 21944028 ~ 21950021 (+) True G1673797
TU1915025 lncRNA downstream 29638 21949247 ~ 21955161 (+) True G1673798
TU1915030 lncRNA downstream 46325 21965934 ~ 21966202 (+) True G1673803
TU1915010 lncRNA downstream 49028 21968637 ~ 21971293 (+) True G1673783
TU1915037 lncRNA downstream 53250 21972859 ~ 21973502 (+) True LOC110499590
XM_021575975.2 mRNA upstream 396 21902605 ~ 21907221 (+) True tomm22
XM_021575967.2 mRNA upstream 13060 21876875 ~ 21894557 (+) False tmem184ba
XM_021575976.2 mRNA downstream 5216 21924825 ~ 21936465 (+) True gspt1
XR_005037961.1 mRNA downstream 16981 21936590 ~ 21945117 (+) False LOC110513322
XR_005037963.1 mRNA downstream 16981 21936590 ~ 21945117 (+) False LOC110513322
XM_036955982.1 mRNA downstream 16981 21936590 ~ 21947717 (+) False LOC110513322
XR_005037962.1 mRNA downstream 17002 21936611 ~ 21945117 (+) False LOC110513322
TU1914567 other upstream 61751 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 93791 21813245 ~ 21813826 (+) False tnrc6b
TU1914367 other upstream 457271 21444883 ~ 21450346 (+) False G1673231
TU1915004 other downstream 17033 21936642 ~ 21959627 (+) True LOC110513322
TU1916535 other downstream 1337195 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 1660421 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 1660528 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 1660528 23580137 ~ 23581432 (+) False faap100

Expression Profile