RNA id: XM_036955982.1



Basic Information


Item Value
RNA id XM_036955982.1
length 1088
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC110513322
representative False

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21936590 ~ 21959627 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGAGTGACGTAACGCAATCGATTTGCGCATGCGCAGCCTGGAAAAACGTGAAGAAAGAAGTATGGCAGACAAACCGGAGGATTTGCCTCTGGACCGGGTGCAGAAGGCTGTTAAGAGCACTGCAGGCTTTCCAGAAGACCAAATCCACCCCAGACTCTGCTCCTGGACGAGAGTCAACACCTCTCCCTCTTAACACTATGGAAGATCCTCAAGCAGATCCAGACCATCCCCGTGTGATCCTTTACAAGACACTGAGGACTGAGTACAAGCCCTTTGAAGCCGAACGACGGCTGCTGGGGAACTTTGACATGTTTCTTTCAGACGACAGCTTTCGCCGCCTGCTGTCCTCGCACATCGGCAAGCACTTCTACGAGAGAAAGAAGGAGCCTTTGTCATTGAACCTGCAGAGCAAGAAGCTGGCCTTGGACATCCAGAGAACCATCCAGGGAACAACAACCTCCATTTCTAAGAAAGGCTGCTACTGCATGGCTTATGTGGCCCACTCTGGGATGGCTGCAGATGAAATAACAGAGAATATTGATTCAGCTGTCAGCACCATTGTGACAAAACTACGGGTTAGAAAGGACCGTTGATAAAGGTCATCCACTTGAAAAGCCAATCAGTGCCTCTGCCCATCTACACCTCTAACCTGAGTAACCTGACCCTTATAGatgaaacacagaaacagacccGCGCAGCCATGGATGCCAAGGTGATCCTTTACAAGACACTGAGGACTGAGTACAAGCCCTTTGAAGCCGAACGACGGCTGCTGGGGAACTTTGACATGTTTCTTTCAGACGACCGCTTTCGCCGCCTGCTGTCCTCGCACATCGGCAAGCACTTCTACGAGAGAAAGAAGGAGCCTTTGTCATTGAACCTGCAGAGCAAGAAGCTGGCCTTGGACATCCAGAGAACCATCCAGGGAACAACAACCTCCATTTCTAAGAAAGGCTGCTACTGCATGGCTTATGTGGCCCACTCTGGGATGGCTGCAGATGAAATAACAGAGAATATTGATTCAGCTGTCAGCACCATTGTGACAAAACTACGGGTTAGAAAGGACCGTTGATAAAGGTCATCCACTT

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU1915005 lncRNA upstream 34510 21901867 ~ 21902080 (+) True G1673778
TU1914999 lncRNA upstream 36408 21896765 ~ 21900182 (+) False G1673775
TU1915025 lncRNA downstream 1530 21949247 ~ 21955161 (+) True G1673798
TU1915030 lncRNA downstream 18217 21965934 ~ 21966202 (+) True G1673803
TU1915010 lncRNA downstream 20920 21968637 ~ 21971293 (+) True G1673783
TU1915037 lncRNA downstream 25142 21972859 ~ 21973502 (+) True LOC110499590
TU1915069 lncRNA downstream 94726 22042443 ~ 22044388 (+) True G1673838
XM_021575976.2 mRNA upstream 125 21924825 ~ 21936465 (+) True gspt1
XM_021575970.2 mRNA upstream 16981 21907617 ~ 21919609 (+) False dmc1
XM_021575971.2 mRNA upstream 16981 21907617 ~ 21919609 (+) True dmc1
XM_021575975.2 mRNA upstream 29369 21902605 ~ 21907221 (+) True tomm22
XM_021575968.2 mRNA upstream 42033 21876915 ~ 21894557 (+) True tmem184ba
XR_005038416.1 mRNA downstream 5291 21953008 ~ 21953135 (+) True LOC118942480
XM_021576720.2 mRNA downstream 25021 21972738 ~ 21974195 (+) False LOC110499590
XM_036955984.1 mRNA downstream 26621 21974338 ~ 22091580 (+) True snx29
XM_036955545.1 mRNA downstream 304414 22252131 ~ 22318724 (+) True cpped1
XM_036955992.1 mRNA downstream 313030 22260747 ~ 22281843 (+) False LOC118942051
TU1914567 other upstream 90724 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 122764 21813245 ~ 21813826 (+) False tnrc6b
TU1914367 other upstream 486244 21444883 ~ 21450346 (+) False G1673231
TU1916535 other downstream 1309087 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 1632313 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 1632420 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 1632420 23580137 ~ 23581432 (+) False faap100
TU1916714 other downstream 1632420 23580137 ~ 23581387 (+) True faap100

Expression Profile


XM_036955982.1 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.4.
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XM_036955982.1 Expression in each Bioproject

Bar chart with 13 bars.
XM_036955982.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
End of interactive chart.