RNA id: XM_021576720.2


Basic Information

Item Value
RNA id XM_021576720.2
length 800
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC110499590
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 21972738 ~ 21974195 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCCTCTCTCGTTCTGAAATCTCACCAGTCTCTGTGTAGCAGAGGGATTTCCCCTACATTACACATTATTTACATATTATGTATTCTCTTTTAAAACCAGAACCACATAACTGCCCAGTCAATCTCAGTCACTGAAACTGGAAAGTACACCATTTTAGCATCTATTTCAGATCTTATTCTTGATTGTCTTATACTGTATTGCTATGTCAGAAGGACAGTGTGGACTGGGATACTACTATGATGGGCTAGTCGAGGAGTGTAAACAATGCTATTTACGATGCAATTCACCACCCAGAGTTTGCACAACATACTGTACTCAATCATCAGAGAGCAAAGCCCCAGAGCCGTTCAACATTCGTCTGACCCTGGTCTGGCTGTTTGTGTTCCTGTGTGCTTTTACtactctcctgctgctgctgcaggtACTGAGGAAGAAGACATGCAGACGTTTCCCAAGGAACAAATTATCACGACTACAGGAAGCAGAGTGTCCTGGGACTGAGAGGGTCTCTGATGATTTCCCTGAGCAGACAGTGGTTATCATGGGACAGGACAGCTTGATGAGTGGAGCTGGAGCCATGGTTCTCCAGGAGGGAACAAACTGCCAGACTCCCGACTGCAACTCCAACCTGCCTGTTCCTTCCACTGAGGAGGGTACCACCATACTGGTCACAACCAAGACAGTACAGATCTTTAACCACACAGATGACATTACAGAGGGAAAGACATTGGGGTTGTGGAGGTCTGGCTTTGCAGCTTGACGTctctattcccccctcccccccccccccccccccccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1915010 lncRNA upstream 1445 21968637 ~ 21971293 (+) True G1673783
TU1915030 lncRNA upstream 6536 21965934 ~ 21966202 (+) True G1673803
TU1915025 lncRNA upstream 17577 21949247 ~ 21955161 (+) True G1673798
TU1915024 lncRNA upstream 22717 21944028 ~ 21950021 (+) True G1673797
TU1915005 lncRNA upstream 70658 21901867 ~ 21902080 (+) True G1673778
TU1915069 lncRNA downstream 68248 22042443 ~ 22044388 (+) True G1673838
TU1915073 lncRNA downstream 74559 22048754 ~ 22050773 (+) True G1673841
TU1915333 lncRNA downstream 220784 22194979 ~ 22195354 (+) True G1674064
TU1915334 lncRNA downstream 222002 22196197 ~ 22196404 (+) True G1674065
TU1915310 lncRNA downstream 225923 22200118 ~ 22206985 (+) False G1674044
XR_005037964.1 mRNA upstream 13212 21945076 ~ 21959526 (+) False LOC110513322
XR_005038416.1 mRNA upstream 19603 21953008 ~ 21953135 (+) True LOC118942480
XM_036955982.1 mRNA upstream 25021 21936590 ~ 21947717 (+) False LOC110513322
XM_036955983.1 mRNA upstream 25021 21940666 ~ 21947717 (+) False LOC110513322
XR_005038415.1 mRNA upstream 25213 21947398 ~ 21947525 (+) True LOC118942479
XM_036955984.1 mRNA downstream 143 21974338 ~ 22091580 (+) True snx29
XM_036955545.1 mRNA downstream 277936 22252131 ~ 22318724 (+) True cpped1
XM_036955992.1 mRNA downstream 286552 22260747 ~ 22281843 (+) False LOC118942051
XM_036955988.1 mRNA downstream 305802 22279997 ~ 22281839 (+) False LOC118942051
XM_036955985.1 mRNA downstream 305802 22279997 ~ 22281843 (+) False LOC118942051
TU1915004 other upstream 13111 21936642 ~ 21959627 (+) True LOC110513322
TU1914567 other upstream 126872 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 158912 21813245 ~ 21813826 (+) False tnrc6b
TU1914367 other upstream 522392 21444883 ~ 21450346 (+) False G1673231
TU1916535 other downstream 1282609 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 1605835 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 1605942 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 1605942 23580137 ~ 23581432 (+) False faap100
TU1916714 other downstream 1605942 23580137 ~ 23581387 (+) True faap100

Expression Profile