RNA id: XM_036955545.1


Basic Information

Item Value
RNA id XM_036955545.1
length 2652
RNA type mRNA
GC content 0.47
exon number 6
gene id cpped1
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22252131 ~ 22318724 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAAGAAGAGCAGAAGGAATGGAGAGGTCCATCCTGCTTCATCCTTTGTAGACCTCCAGCTGGGTCTgcaaaggagggagggggactgTGACAGGGGAGGGGACGAGTGGGCCGAAGAGGTCCAACTGACCCAGCAGGCTGTGGAGGCCGTCAACAAGCTGTGCCGCAGGCCCAAGTTCATGGTGCTGTGTGGGGACATGGTCCATGCAAGtccggGAGTGAAGGCGGTATTCTCAGGCCACTACCACTGTAACgcgtggggtggggggtggggacaTGCTGACATGCTGGTGAGCTCCGCTATAGGCTGCAGGGTGGTGGTAGTGACCGCCGGCCAGATCAACCATCGCTACCACAGCCTGGAGCAGCTCAGTGGGCGGGGCATGGGCGAGGACCTCAGGAAACCACTGCAGGTCTGAGCCAATCAGAAGAGAGGACACACTCCGGACCATAAAACACCAGGGCCCGATTCATAATGCATCTCAGagtagctgatctaggatctagGATTTTTtcctgcaaagaaaacactatttTATAGTGAAAAGATGTAGGCATTTAGAATGAATTATGGAGTGGATCTTTATTGTGACCGGTGACATCACGTGCCCCGCGCAGTCCTACCTTCAAAGTGATTCGGCAATTTCCATCATCATTTGTCGCAATAAAGGAAGTTTGACACAAGAAAAATTCACCCTTGTCAAAAGCTAAACAAATGTTGTAGATCTTTAGAAAAGCTATCCTTtatctgccgtttccattacACATGTCCAATGATTTTTTTTGCGACATTGTTTTTATAGAATAAAACTGGGTCAATggggtcaatggaaacctgcctagtGACGTTCACACTTGTCACAAATTCCCCTGGTACTGCTGCTTATTCCGTGCACCATAAATTCCCCTGATACTACTGCTTAATCCATGCACCACAAATTCCCCTGATACTACTGCTTAATCCATGCACCACAAATTCCCCTGATACTACTGCTTATTCCATGCACCACAAATTCCCCTGATACTACTGCTTATTCCATGCACCACAAATTCCCCTGGTACTGCTGCTTATTCCGTGCACCACAAATTCCCCTGGTACTACTGCTTATTCCATGCACCACAAATTCCCCTGATACTACTGCTTAATCCATGCACCACAAATTCCCCTGATACTACTGCTTAATCCATGCACCACAAATTCCCCTGATACTACTGCTTAATCCATGCACCACAAATTCCCCTGATACTACTGCTTAATCCATGCACCACAAATTCCCCTGATACTACTGCTTAATCCATGCACCACAAATTCCCCTGATACTACTGCTTATTCCGTGCACCACAAATTCCCCTGGTACTACTGCTTATTCCGTGCACCACAAATTCCCCTGGTACTACTGCTTATTCCATGCACCACAAATTCCCCTGATACTACTGCTTATTCCGTGCACCACAAATTCCCCTGGTACTGCTGCTTATTCAGTGCACCACAAATTCCCCTGATACTACTGCTTAATCCATGCACCACAAATTCCCCTGATACTACTGCTTATTCCGTGCACCACAAATTCCCCTGGTACTGCTGCTTATTCCATGCACCACAAATTCCCCTGATACTACTGCTTAATCCATGCACCACAAATTCCCCTGATACTGCTGCTTATTCCATGCACCACAAATTCCCCTGATACTACTGCTTATTCCGTGCACCACAAATTCCCCTGGTACTACTGCTTATTCCATGCACCACAAATTCCCCTGATACTACTGCTTATTCCATGCACCACAAATTCCCCTGATACTACTGCTTATTCCATGCACCACAAATTCCCCTGATACTACTGCTTATTCCGTGCACCACAAATTCCCCTGATACTACTGCTTATTCCATGCACCACAAATTCCCCTGATACTACTGCTTATTCCATGCACCACAAATTCCCCTGATACTACTGCTTAATCCATGCACCATAAATTCCCCTGATACTACTGCTTATTCCGTGCACCACAAATTCCCCTGATACTACTGCTTATTCCATGCACCACAAATTCCCCTGATACTACTGCTTATTCCGTGCACCACAAATTCCCCTGATACTACTGCTTATTCCATGCACCACAAATTCCCCTGATACTACTGCTTATTCCATGCACCACAAATTCCCCTGGTACTACTGCTTAATCCATGCACCATAAATTCCCCTGGTACTACTGCTTAATCCATGCACCACAAATTCCCCTGATACTACTGCTTATTCCATGCACCACAAATTCCCCTGGTAGTGCTGTTTATTCCATGCACCACAAATTCCCCTGGTACTACTGCTTAATCCATGCACCACAAATTCCCCTGATACTACTGCTTATTCCGTGCACCACACATTCCCCTGGTACTACTGCTTATTCCGTGCACCACACATTCCCCTGATACTACTGCTTATTCCATGCACCACAAATTCCCCTGATACTACTGCTTATTCCGTGCACCACACATTCCCCTGGTAGTGCTGCTTATTCCGTGCACCAGCTCCGGAGGTTTATATCACCGGCCTATAGGCGTCACTGAACTGTTTCATTACGCACACCaggttcccattccccctgattagtaattgtatatatgTGCCATCTGTTCACCATTGTTTTGTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1915310 lncRNA upstream 45146 22200118 ~ 22206985 (+) False G1674044
TU1915311 lncRNA upstream 45146 22200118 ~ 22206985 (+) True G1674044
TU1915334 lncRNA upstream 55727 22196197 ~ 22196404 (+) True G1674065
TU1915333 lncRNA upstream 56777 22194979 ~ 22195354 (+) True G1674064
TU1915073 lncRNA upstream 201358 22048754 ~ 22050773 (+) True G1673841
TU1915573 lncRNA downstream 8641 22327365 ~ 22327568 (+) True G1674292
TU1915604 lncRNA downstream 69742 22388466 ~ 22391636 (+) False G1674319
TU1915605 lncRNA downstream 69742 22388466 ~ 22391636 (+) False G1674319
TU1915606 lncRNA downstream 69742 22388466 ~ 22391636 (+) True G1674319
TU1915622 lncRNA downstream 78296 22397020 ~ 22397239 (+) True G1674331
XM_036955984.1 mRNA upstream 160551 21974338 ~ 22091580 (+) True snx29
XM_021576720.2 mRNA upstream 277936 21972738 ~ 21974195 (+) False LOC110499590
XR_005037964.1 mRNA upstream 292605 21945076 ~ 21959526 (+) False LOC110513322
XR_005038416.1 mRNA upstream 298996 21953008 ~ 21953135 (+) True LOC118942480
XR_005038415.1 mRNA upstream 304606 21947398 ~ 21947525 (+) True LOC118942479
XM_021576114.2 mRNA downstream 22005 22340729 ~ 22347757 (+) True ercc4
XM_021576115.2 mRNA downstream 29193 22347917 ~ 22388445 (+) True mrtfba
XM_036955995.1 mRNA downstream 142516 22461240 ~ 22465079 (+) False foxj1b
NM_001160522.2 mRNA downstream 242725 22561449 ~ 22562880 (+) True zgc:163057
XM_021576119.1 mRNA downstream 253003 22571727 ~ 22572592 (+) True LOC110499167
TU1915004 other upstream 292504 21936642 ~ 21959627 (+) True LOC110513322
TU1914567 other upstream 406265 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 438305 21813245 ~ 21813826 (+) False tnrc6b
TU1914368 other upstream 801785 21444883 ~ 21450346 (+) False G1673231
TU1916535 other downstream 938080 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 1261306 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 1261413 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 1261413 23580137 ~ 23581432 (+) False faap100
TU1916714 other downstream 1261413 23580137 ~ 23581387 (+) True faap100

Expression Profile