RNA id: XM_036955986.1


Basic Information

Item Value
RNA id XM_036955986.1
length 1711
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC118942051
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22260747 ~ 22281843 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCTACCGATACGGCCACCAGCTCTACCGCCGCCACCTCTACCGGCACCATCACTAGCTCTACCTCCACTAGCTCTAATGCCAAAACCTCTACCTCGACCACATTTATCTCCGCCACAACCTCCACCCTGCAGCATACCCGTGTCCAAATGTTGCTGCAGCAGTTCTATTGGAGCTGTCCCTGAGGTCGAGGCTCCAGGAGTCGAGGCCGAGGAAGAGGAAGGCAGAGTCTGCAGCTGTACTGACAGCCTCACCTTACAAAAGGTTGCTGGAGGAAAAGGCTCGACAGAAACATcaacaagaagagagagagagaaagaaaatggtgCAGGTTCTTCAAATAAAAGTTGTCTCAAAGAAGGTTGTTGCAGCACAACAAGCCACATCAGCCACCAAAGAAGGTTGTTGCAGCACAACAAGCCACATCAGCCACCAAAGAAGGTTGTTGCAGCACAACAAGCCACATCAGCCACCAAAGAAGGTTGTTGCAGCACAACAAGCCACATCAGCCACCAAAGAAGGTTGTTGCAGCACAACAAGCCACATCAGCCACCAAAGAAGGTTGTTGCAGCACAACAAGCCACATCAGCCACCAAAGAAGGTTGTTGCAGCACAACAAGCCACATCAGCCACCAAAGAAGGTTGTTGCAGCACAACAAGCCACATCAGCCACCAAAGAAGGTTGTTGCAGCACAACAAGCCACATCAGCCACCAAAGAAGGTTGTTGCAGCACAACAAGCCACATCAGCCACCAAAGAAGGTTGTTGCAGCACAACAAGCCACATCAGCCACCAAAGAAGGTTGTTGCAGCACAACAAGCCACATCAGCCACCAAAGAAGGTTGTTGCAGCACAACAAGCCACATCAGCCACCAAAGAAGGTTGTTGCAGCACAACAAGCCACATCAGCCACCAAAGAAGGTTGTTGCAGCACAACAAGCCACATCAGCCACCAAAGAAGGTTGTTGCAGCACAACAAGCCACATCAGCCACCAAAGAAGGTTGTTGCAGCACAACAAGCCACATCAGCCACCAAAGAAGGTTGTTGCAGCACAACAAGCCACATCAGCCACCAAAGAAGGTTGTTGCAGCACAACAAGCCACATCAGCCACCAAAGAAGGTTGTTGCAGCACAACAAGCCACATCAGCCACCAAAGAAGGTTGTTGCAGCACAACAAGCCACATCAGCCACCAAAGAAGGTTGTTGCAGCACAACAAGCCACATCAGCCACCAAAGAAGGTTGTTGCAGCACAACAAGCCACATCAGCCACCAAAGAAGGTTGTTGCAGCACAACAAGCCACATCAGCCACCAAAGAAGGTTGTTGCAGCACAACAAGCCACATCAGCCACCAAAGAAGGTTGTTGCAGCACAACAAGCCACATCAGCCACCAAAGAAAGGGATGCGGGATGTATTTTCTGTGAGGAGCTGTTTTCAGTCACGGGACTGGATTAGATGTCAGCAGTGCAGGAGGTGGTCTCATGAGTTGTGCTCCAATTGTACTGGGGATAGCTTAATGTGTGACCTAGGTACAAATTAGAATTGTGCAATAGCAGAGCATAAGAGATGCAACATCAATGTTACACTGAATTAGTTATGTTTTTTTGTTATTAAATGTTATATTCCAATGTTATTTAATGCTATTAGTTATATTCCATTCCAATATCATATTGCaatgaatatatttttttatgaattaaaAACAACTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1915465 lncRNA upstream 26266 22253333 ~ 22253731 (+) True G1674190
TU1915310 lncRNA upstream 73012 22200118 ~ 22206985 (+) False G1674044
TU1915311 lncRNA upstream 73012 22200118 ~ 22206985 (+) True G1674044
TU1915334 lncRNA upstream 83593 22196197 ~ 22196404 (+) True G1674065
TU1915333 lncRNA upstream 84643 22194979 ~ 22195354 (+) True G1674064
TU1915531 lncRNA downstream 18346 22300189 ~ 22300408 (+) True G1674254
TU1915536 lncRNA downstream 22177 22304020 ~ 22304231 (+) True G1674259
TU1915538 lncRNA downstream 23384 22305227 ~ 22305489 (+) True G1674261
TU1915540 lncRNA downstream 23876 22305719 ~ 22305964 (+) True G1674263
TU1915573 lncRNA downstream 45522 22327365 ~ 22327568 (+) True G1674292
XM_036955984.1 mRNA upstream 188417 21974338 ~ 22091580 (+) True snx29
XM_021576720.2 mRNA upstream 305802 21972738 ~ 21974195 (+) False LOC110499590
XR_005037964.1 mRNA upstream 320471 21945076 ~ 21959526 (+) False LOC110513322
XM_021576114.2 mRNA downstream 58886 22340729 ~ 22347757 (+) True ercc4
XM_021576115.2 mRNA downstream 66074 22347917 ~ 22388445 (+) True mrtfba
XM_036955995.1 mRNA downstream 179397 22461240 ~ 22465079 (+) False foxj1b
NM_001160522.2 mRNA downstream 279606 22561449 ~ 22562880 (+) True zgc:163057
XM_021576119.1 mRNA downstream 289884 22571727 ~ 22572592 (+) True LOC110499167
TU1915004 other upstream 320370 21936642 ~ 21959627 (+) True LOC110513322
TU1914567 other upstream 434131 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 466171 21813245 ~ 21813826 (+) False tnrc6b
TU1914368 other upstream 829651 21444883 ~ 21450346 (+) False G1673231
TU1916535 other downstream 974961 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 1298187 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 1298294 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 1298294 23580137 ~ 23581432 (+) False faap100
TU1916714 other downstream 1298294 23580137 ~ 23581387 (+) True faap100

Expression Profile