RNA id: XM_021576115.2


Basic Information

Item Value
RNA id XM_021576115.2
length 5252
RNA type mRNA
GC content 0.52
exon number 14
gene id mrtfba
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22347917 ~ 22388445 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTTTGACTACTGATTACGTCACCAAATTTATCCGAACATATCAGCAGGAGCCATTTTATTCCGCGAATGAAACTTCCGATTTCCTAAAAAACACAAGACATTCTCCTCGACATCAATTGCAGTGCGTCGTTGAATCGAATGGTAAACCTTTTCATACGGCAATGCGAAGGAATCGGGTCTGTCTCCATGGCTTAGTGTGCTGTAGCATTTGGACCCAGGCAGAAGTCTCTCTTCATCTTCTCCTAGCGGTGAGATCATCGTGACATCACACCGGGACGGTAACTGCCCCTGCTGGTTACTAGGAAGCCCCCTGatttcctccccccccccccgtggagATGGAGCCCCAGGGGCTGCCCAGAGCAGAGGGGGATTATGAAATGTTGGGTCTGCTGGTGCCCAGTCCCCAGAGTGAGGCGGTCACCCATGAGCTGGAGGAGCTGACCCTACAGCCCAGCAACAACCTGCCTCCCCTCAACGAACGCAAGAACGTCCTTCAGCTGAGGCTACAGCAGAGACGCACCCGTGAGCAGCTGGTAGACCAGGGCATCATGCCTCCTCTAAAGAGCCCAGCGGCATTTCATGAGCAGATACGCAGCCTGGAGAGAGCCAGGACTGAAAACTTCCTGAAACACAAGATCCGCAGCCGACCAGAGAGATCTGAACTGGTCAGAATGCACATCCTTAAGGAGACTGGGGCAGAGCCCTCCCTGCAGGCCACCCAGATGAAGCTGAAGAGGGCCAGGCTGGCTGACGACCTGAATGAGAAGCTGGCCCAGCGCCCCGGCCCCATGGAACTGGTAGAAAAGAACATTCTGCCTGTAGAACCCAGCGTCAAGGAGGCCATCATTGTAAACTACCCCAAAGCGCTGGACACGTACGGGTTTGATGAGGACAGCGGGGACGCCCTGTCTCcagagcagccagccagccatgagTCCAAGGTCTCCACACCCTCCCCTGGGGAACCTCGGGCCCTGGAGGCCCCCTGCCCACCACCGCTGCCCACAATCACCAACAACCACACAATCCTACAGCCCTTTCCTGTTGTCACCCAGGCAACGGCAGACTTCCTCAAAGCTCTCTCCACCCAAGAGCTGCCAGTCAGTCGCCCAGCACCCGCGTCTCAGCCTATCATCACTGTCGTTCCTTCAAAGCCAGGGCCCACCCTAGTGAAACAGAGCCAGCCCAAACAGCCGGGAGAGAGGAATCGCAGTAAGAAGGGCAAGGACCCAAAGCCCCGGGTCAAGAAGTTAAAGTACCACCAGTATGTCCCCCCAGACCAGAAACAGGAGGCCAGCGATGCCCCCATGGACTCATCCTACGCCAAGATCCTCCaccagcagcaactcttcctccAGCTGCAGATCCTCaaccaacagcagcagcagcactacaACTACCACACCATCCTCCCAGCACCCTTAAAaccTGTAGCTGAGGGTCAGAACAGCGGTGTGAGCGGCCTGCCAACCTCTATAGTGCTGTCCCTGCCTCCTGCCCCCCATGTCACTGTCCCTCCTCCCACCCCTGTCCGTCCCAACAACAGCCTATCCAACCGCAAGCCTGGCCAACTGCCTCCTAACCTGGAGGACATGAAGGTGGCCGAGTTGAAACTGGAGCTGAAATTGCGAAGCCTCCCTGTCTCAGGGACCAAGACTGATCTCATCGAGAGGCTGAAGCCCTACCAGGAGAGTCCAAGCACCCCGGCCCCTACCACAGTCCCAAACCCCGGCCCTAAAACCCTCCCCTCAGTTCCCATAGAGGTTGGCTCATCCCCTGCACTTCTACCTGCCCACCAGGTGGCACCAGAGAGCATGAGCGCCACAGCCCCAGTGTCCCCAATCCCCACAGACCTCGCCACCTTCAGAGACGACGGAGGGATGCCCAGGGTATCCAAGCTCCTTTGCGACCCCCAGAGGGTGAGCCTCTGTCGGACAGGCGCGGGGATGTCCCACCTTGGCCTGGGTGTTGTCCCGGAGGAGAAGGACCGGCGGCTCCATGAGAAGGAACGTCAGATTGAGGAGCTGATGAGGAAGCTGGAGCAGGAGCAGATGCTGGTGGAGGAGCTCAAGATGCAGCTGGGGGTAGAGAAGAAGACCCAGCCCCTCCAGGGATCCTCAGACCCCGTCCCCATGATCCAGACCTTCAACGCAGTCAAAATGGAAGGCAGGGTCCTTCCTAACTGCTCAGCCATGATTAACTCAACCCTGGCCCCCCAGACTCTCCCCACTGTGGTGAAGGTAGAGGATGTCATTTGTAACTCCAGACCCCATTCCCAGCCTAATCCGGCCCCCAGTCTGCCCCAGTTTTTCATCAGCCACCAGGGGAGAGTGTCTCAGGTTCTAGGCCAGCCTGTTTCCCAGACCCTACTCACGGCCCAGGATGGCTCTACTCAGATCCTCCTTCCTGTCCTCCAGGCTACGTTGTCAAATCAGGCCTCAGGTCTGATGCAAGCCTCCATCTCCCAGCTGCATACCACCAAGATGGAGACAGCCTCCACTCAGCAGATAACTAATCACAACCACATTTTGCAGACTGTTACAGTTTGTAACGGCTCTGGGATGGTGGAGAACCAGACTATGCCCGACATGCCTCCCCAGTGTTTCCTGAGCAGCTCCCCAGATAACAGGCTCTCTCCCCGTGGGGCTTCACCCAGCCACAACCTTTCCAATGGGCCTGTTAACAAGtccccctctccatcccagcccaccttcatcctccacccctcctccctcgtTACCCAGCCCCCCAAGACCAGGGAGCCCCCTCGCTACGAGGATGCAGTTAAACAGACCCGCAACCTGCAGCAGGCCAACAACCTCACACAGGTTTCCACGGCAACCAGCCAGCAGATGGATGACCTGTTTGACATCCTGATTCAGAGTGGAGAGATCACGCCATTCATCCAGCAGGACCTGCCTTCTCTAAGCACTAAGACTGTCCCTGTCACAGCCAACATCACTACCCTACCTGTCAACACTGCCCTGTTCAGAACCCCTCCACAGATCCAGGTTGCtccccctcccacccctcccttcAACCCCCTGCCCCTCCCCAGCCTGGCCTCCGACAACCAGCTGGAGGCCTTCCTGGAGGGGACTCTGAACAACCCGTCCCCAACCACGGATCCCCGCACCCTGGGTCTGATCGAGGAGTTGCAGTCCCAGCTcctggatcaaccctactccccAATGGACACCTCAGAGCTGTCCTTCTGCGACTCCacgtctcccccttcctccctcaacATGGGCTTGTCCGACACAGTCCTGGACAACATGGAGTGGCTGGATCTAACCATGCCGTCCGACCCCGCGGGGGGGCTCACACCCCTGGGGATTCCTTCAGACTTCCTGGATACACACGACCTGCAGCTGCACTGGGACTGAGggagaagggatggatggagtgaggaaggaaggaagaggaggagtggtgcAGGGATAGAGGGACTCAATGTAACAAATACAGACTTGGTCAGGTGATGTTAGTCCTCCTTGTGTatttaaaacataaaaaatatttaaaatgttaTGCCATATAATAAGATTAGCCAGCTGGTGATCGGGGCAGTGGATGTTTAATAGGAGTACTGGGACCAGAGCCAAATGAACAAGGAGGCAGGTGGTATGTAAATATCCTGTAAATGTTAGCTGTTCCCTCAGCCCTGCTGGAGTTTTTATTGAATTGGGCAAAGCTTTCACTATACAACACATGGCAGTCAGCCTTACGCTGTTCAGCTTTCCTTGCGGTGAACACGTGGATGTGTTAACTTAGCATGCGTTTCACATTGGTCATGCTACAGGGTCTGGATCTACAGCCATTGCTCTGTGGAAGCATGCTGCTGTGCCATACAGTCAGTCTGAGAATGTGGTTTGTTTATTACAGATCTGCTGTGCACAAGCCACGACAAACAGCATAACTGACCCAAGTAAAACTGACAAGAGTACAAGGCTGTTTTACACTGGTCTTTTTTTTTGCGCCATACCTATATTTGGTATTGCGACATACCTATATTTGGTATTGCGACATACCTATATTTGGTATTGCGACATACCTATATTTGGTATTGCGACATACCTATATTTGGTATTGCGACATAGCTACATATAGTTTTGGATGAGACTGTTTTTTTCCTGAACAAAACAGACGCTGTGGTCAGTTGGACTATTTAAGCAACTGAACTGACACTGAGAACAAAGACTCACTCCTATTGGATGAGGAGGAGTGGACTCCTCCCACTCTGAGCTATGCACTAAGGAGGCGGGCCTTACACCTGCCCCTCACACAAGGAAATCTGAATCACAGATAAAGATTTTAATGAACCGTTTATTGAAAAAAACGTCGATCCACGTGTTGGTTATCTTTGTGTACTTTCAATTCAAGGATTCCAAGTTGATCCGTCTGAAAGAAAGTGGAGACTACATTGTTGGCAGCTTTATCTTCTGAAAGACAACTGACGTATCAGTGGCAAGGGAACAATTATGCTATCACACAGGTACACTACATAGAGGTTAATGTGTATATACTTACTGTATGCTAGCCTGGTCCCAAggctgtttgtgctcttgccaactccattgctTATTGCCAAGCATGTTTGAcatgacaatgagtgacaagAAGTTGGCATGATAGTCTGAGTGCCAGTTGTTTTGTATGCTACAAGTGTTTGTGACATGTTTTAATGTGGCTGCATGACCTCTGGCAGAAAGAGGTGCTATACTGTAatcttctctgtctgtcctgaAATCTGTCTGTCAAATCTCTGCATTTGTCTCGGTCTCTCAGCATTCTTCTCAGTCTCTCATTGTGTGTCTGTGGTTCTGTCTGAGAAATGATGCATGATGtctctgtctgcatgtgtgtctatgtgtgccctttctgtgtgtctctgtgttgttgaacGTTTTAAACCATGTCTGATATCGGGCTATATTTGTCTCTGTCACTGAGTTGGCTGCAACTCACTTGAGTCGTCTTTATTTTTATGAAGTTGGACGTTCATAAGACAAATGAACAACTTTTATAGGCTGAGTTTTAAAAAGGTttgtctcacagaacagctttgTAGGACTGTTCCCTCTGTCCTGTTTGGTTTGTGTTATGTGGTAAAACGCACAGTAAACACCCACAGTGGTGTGACCAACAGAGTTAAACTAAAAGGGATGACATTAAGCTTCTGGTATAGCTACCATTTTGTGGCTGAATTTGATGATGGTGTTTGTGTAtaatgtataattttttt

Function

GO: NA

KEGG:

id description
K22525 MKL; MKL/myocardin-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1915573 lncRNA upstream 20349 22327365 ~ 22327568 (+) True G1674292
TU1915540 lncRNA upstream 41953 22305719 ~ 22305964 (+) True G1674263
TU1915538 lncRNA upstream 42428 22305227 ~ 22305489 (+) True G1674261
TU1915536 lncRNA upstream 43686 22304020 ~ 22304231 (+) True G1674259
TU1915531 lncRNA upstream 47509 22300189 ~ 22300408 (+) True G1674254
TU1915604 lncRNA downstream 21 22388466 ~ 22391636 (+) False G1674319
TU1915605 lncRNA downstream 21 22388466 ~ 22391636 (+) False G1674319
TU1915606 lncRNA downstream 21 22388466 ~ 22391636 (+) True G1674319
TU1915622 lncRNA downstream 8575 22397020 ~ 22397239 (+) True G1674331
TU1915624 lncRNA downstream 11883 22400328 ~ 22400573 (+) True G1674333
XM_021576114.2 mRNA upstream 160 22340729 ~ 22347757 (+) True ercc4
XM_036955545.1 mRNA upstream 29193 22252131 ~ 22318724 (+) True cpped1
XM_036955992.1 mRNA upstream 66074 22260747 ~ 22281843 (+) False LOC118942051
XM_036955985.1 mRNA upstream 66074 22279997 ~ 22281843 (+) False LOC118942051
XM_036955986.1 mRNA upstream 66074 22279997 ~ 22281843 (+) False LOC118942051
XM_036955995.1 mRNA downstream 72795 22461240 ~ 22465079 (+) False foxj1b
NM_001160522.2 mRNA downstream 173004 22561449 ~ 22562880 (+) True zgc:163057
XM_021576119.1 mRNA downstream 183282 22571727 ~ 22572592 (+) True LOC110499167
XM_036955556.1 mRNA downstream 186097 22574542 ~ 22575413 (+) True LOC110499592
XM_036955557.1 mRNA downstream 194371 22582816 ~ 22583667 (+) True LOC118942010
TU1915004 other upstream 388290 21936642 ~ 21959627 (+) True LOC110513322
TU1914567 other upstream 502051 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 534091 21813245 ~ 21813826 (+) False tnrc6b
TU1914368 other upstream 897571 21444883 ~ 21450346 (+) False G1673231
TU1916535 other downstream 868359 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 1191585 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 1191692 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 1191692 23580137 ~ 23581432 (+) False faap100
TU1916714 other downstream 1191692 23580137 ~ 23581387 (+) True faap100

Expression Profile