RNA id: TU1915787


Basic Information

Item Value
RNA id TU1915787
length 2420
lncRNA type sense_over
GC content 0.50
exon number 2
gene id LOC118942052
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22386323 ~ 22391573 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcccatgtttcatgagctgaaataaaagattgcagaaatgttccatacacaccaaAAGCTTatctctctcaaatgttgtgttactgagcatttctcctttgccaaaatactccatccacctgacaggtgtggcatatcaagaagctggttaaacagcatgatcattactaaggtgcatcttgtgctggggacaataaaagtccactctGAAATTTGcagtcaagttttgagggagcgtgcaattggcatgcggactgctggaatgtccaccagGGCGGTTGTCAGAGAATGGaacgttaatttctctaccataagcggcctaaacgtcgttttagagaatttggcaaccggcctcacaagcacagaccaggtgtaaccacgccagcccaggacctccacgtccagttagaccaggtgtaaccacgccagcccaggacctccacatccagttagaccaggtgtaaccacaccagcccaggacctccacatccagttagaccaggtgtaaccacgccagcccaggacctccacatccagttagaccaggtgtaaccacgccagcccaggacctccacatccagttagaccaggtgtaaccacgccagcccaggacctccacatccagttagaccaggtgtaaccacaccagcccaggacctccacatccagttagaccaggtgtaaccacaccagcccaggacctccacatccggttagaccaggtgtaaccacaccagcccaggacctccacatccggttagaccaggtgtaaccacaccagcccaggacctccacatccagttagaccaggtgtaaccacgccagcccaggacctccacatccagttagaccaggtgtaaccacaccagcccaggacctccacatccggttagaccaggtgtaaccatgccagcccaggacctccacatccagttagaccaggtgtaaccacaccagcccaggacctccacatccggttagaccaggtgtaaccacgccagcccaggacctccacatccggttagaccaggtgtaaccacgccagcccaggacctccacatccagttagaccaggtgtaaccacaccagcccaggacctccacatccggttagaccaggtgtaaccacgccagcccaggacctccacatccagttagaccaggtgtaaccacgccagcccaggacctccacatccggttagaccaggtgtaaccacgccagcccaggacctccacatccagttagaccaggtgtaaccacgccagcccaggacctccacatccggttagaccaggtgtaaccacgccagcccaggacctccacatccgcttcttcacctgcgtaaccgtctgagaccagccaaccgGACAGCTGAAGAAATTGCGGGTCTGAACAACCGAATAATTTCTGACCTTAAGGTCATAAATCGTCTCAGGAAAGCTCATCAGTGTGCTCagagtcttgacctgactgcagtttgggcGTCGTAAAAGACTGCAGTGGGCAAAGGCGCACCCTCGATTCCCACTGGTGCTAATCATGGTTGAATCaaggtttcaactgtaccgggtacATGGCCGATGTGTGAGTTAgaggttttctgatgtcaacgttgtgaacagagtaccccatggtggtggtggggttaaggtatgggcaggcataagctatggacaacgaacacaattgcattttattgattgcaatttgaatgcacagagatcctGCGGCTCATTGTcgtgccaccatcacctcatgtttcagcatgaaaatacACAGCCCCTGTCAgaaagatctgtacacaatttctggaaactgaaaatgtcccagttcctacatgacctgcatactcagacaggtcacccattgagcattttTGGGATGCTATGGATCgatgtgtatgacagcatgttccagttcccaccaatatccagaggagtgggacaacatgccccaatcaacagcctgatcaactctatgtgaaggagatgtgtcatgctgcctgaggcaaatggtggtcacaccagatactgactggttttctgatccacacccctaccttttttaaggtatctgtggccAACAGATACACAtcttattcccagtcatgtgaaatccatagagtaGGGCCtagtgaatgtatttcaattgacggatttccttatatgaactaaaatctttgaaaatgttgcgTTTAcacttttgttcagtgtagttacatTTCAGACAAAGAACCAGGGTTGAACGGGAGACAAGTACCATACAGAAGACACAGAATTAGGTAAGGCCGAAATCAAGATCCGCTTGCAATGATCAACACGATGACATCTTGTTATGAGATAGCGACAACACAAATGAACCAGTGCTGTAAGTGTAAGGCTATGGCCTTATTGCTTCACTAACATCCTATTAACAGTAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1915761 lncRNA downstream 26830 22361971 ~ 22362192 (-) True G1674459
TU1915760 lncRNA downstream 27314 22361500 ~ 22361708 (-) True G1674458
TU1915758 lncRNA downstream 31205 22357587 ~ 22357817 (-) True G1674456
TU1915751 lncRNA downstream 40439 22348353 ~ 22348583 (-) True G1674449
TU1915750 lncRNA downstream 40845 22347950 ~ 22348177 (-) True G1674448
TU1915804 lncRNA upstream 23041 22414614 ~ 22416526 (-) True ubald1a
TU1915833 lncRNA upstream 72837 22464410 ~ 22465055 (-) True G1674523
TU1915836 lncRNA upstream 73808 22465381 ~ 22465616 (-) True G1674524
TU1915840 lncRNA upstream 80889 22472462 ~ 22472718 (-) True G1674528
TU1915848 lncRNA upstream 92016 22483589 ~ 22483987 (-) True G1674534
XM_036955544.1 mRNA downstream 136576 22204992 ~ 22252446 (-) True shisa9a
XM_021575973.2 mRNA downstream 486805 21896705 ~ 21902217 (-) False maff
XM_021575974.2 mRNA downstream 487495 21896705 ~ 21901527 (-) False maff
XM_021575979.2 mRNA downstream 602818 21756587 ~ 21786204 (-) False LOC110499087
trnar-ccu-54 mRNA downstream 678830 21710120 ~ 21710192 (-) True trnar-ccu-54
XR_002469927.2 mRNA upstream 68 22391641 ~ 22395025 (-) False LOC110499164
XM_036955993.1 mRNA upstream 23041 22414614 ~ 22446030 (-) False ubald1a
XM_036955994.1 mRNA upstream 23041 22414614 ~ 22446035 (-) False ubald1a
XM_036956000.1 mRNA upstream 99165 22490738 ~ 22515812 (-) False rhbdf1b
XM_036955997.1 mRNA upstream 99165 22490738 ~ 22525188 (-) False rhbdf1b
TU1915780 other downstream 544 22386323 ~ 22388478 (-) False LOC118942052
TU1915782 other downstream 544 22386323 ~ 22388478 (-) False LOC118942052
TU1915580 other downstream 57216 22331350 ~ 22331806 (-) True G1674299
TU1914957 other downstream 544229 21836333 ~ 21844793 (-) True G1673740
TU1914775 other downstream 792836 21589029 ~ 21596186 (-) True phf5a
TU1915783 other upstream 244 22391817 ~ 22394562 (-) True LOC110499164
TU1915789 other upstream 5336 22396909 ~ 22397223 (-) True G1674481
TU1915929 other upstream 199997 22591570 ~ 22601548 (-) True G1674592
TU1916236 other upstream 444250 22835823 ~ 22837881 (-) True msrb1b
TU1917320 other upstream 465540 22857113 ~ 22864346 (-) False G1675801

Expression Profile