RNA id: XM_036955994.1


Basic Information

Item Value
RNA id XM_036955994.1
length 4560
RNA type mRNA
GC content 0.44
exon number 2
gene id ubald1a
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22414614 ~ 22446035 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTACTGATCAGCACTCTTACAGTAAATATTTGTGTTTGCTCAACCGGTTGTAATGGTGGATGACTGAGACAGAAAAGAGAGGACTAAAACCACGAAAACAAAGTCCAGACACAACACTACGAGCCCTGAGTAGGAATAAAGCATCGTCGCAAAATGGAGGAACTCAAACACCAAGTAATGATAAACCAGTTCGTCTTGACAGCAGGTTGTGCGGCAGATCAGGCGAAGCAGCTTTTGCAAGCGGCACATTGGCAATTTGAGATGTGCACCCCAGCCAACACACCGGCCACCCCGCCCAACTTCCCTGATGCCCTCACCATGTTCTCCCGTCTCAAGGCTTCAGAGAGCTTCACCTCCAGCAGCCCCATGGCCTCCATggccacctctccccctcctccacacGGTTGCTGGGGCGTGCCCCCACTCCCCATGCCCATGAGTGGTCCACAGGGTCAGGGACTCTGGACTCAGGGGCAGCCCCCTTCGCAGCCCCCCTCCAACCCCGCAGTCTGGCCCACGGGGGTCACCGTTAACCCCCACCAGCACCCAGCCACCGAACAGAAGGCGAGTGTGGCCATGGAGGCCGAGAGATGAGGGGCCAGGACTAGAcggccctgggggggggggggggggggaagtgaaGGTGTGTCTCTTTCCAATTGAGGGTGGTAGGGTGGAGATAGAGACAGCTACACAAACCAAGAAAAACCAAGCAAGTACTAAACGTGGACAATTCAAGAAGTGGAAACAATGCAAATAAGaaatcaaactttttttttttaagaagcgCACACACTTAGTAATAAGAAAGAGAGCAACTGAAATCTTTGTTTAGAAAAAAATATTCTCAGTAAATGCATAGATAAGAGAAATGTATGGAACAAAACATCTTCAAGTCCAAGGATTATACTTCTGATGTTTTCTGAGACAAGGACTTAAAGCAGCAACTGTTTctgctctctcttttcatctgtcCAAGTGTTTATACTCTACTAGGAACATGTTATAGAGAGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAGAGAGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAGAGAGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAAAGAGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAGAGAGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAAAGAGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAGAGAGTGTGGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAGAGAGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAGAGAGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAGAGAGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAGAGAGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAGAGAGTGTGGTGTGTACACTGCATAGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAGAGAGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAGAGAGTGTGGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAGAGAGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAGAGAGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAGAGAGTGTGGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAGAGAGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAAAGAGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAGAGAGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAGAGAGTGTGGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAGAGAGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAGAGAGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAGAGAGTGTGGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAGAGAGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAGAGAGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTGGGAACATGTTATAGAGAGTGTGGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAGAGAGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAAAGAGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAAAGAGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAGAGAGTGGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAGAGAGTGTGTACACTGCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTAGGAACATGTTATAAAGAGTGTGTACACTTCATGGAGAGAGGGGATCTGGCAGTACAGTGTTTATACTCTACTCATCACGAACGTGTTTGCAGAGCAGAAGAAACAGCAACCTAGTTTTCATTACCCATCGTAAGATGGGACTCTTCTTACCTCACCTAGTCGTCACCTGACTTCTTTCAGCCTATCAGGGATTCTCAACTGTTTGACAACacaggactttttttttttttaaacaattgtgATTTTTCAGCTCTGGTATTTGCTCATGTTGACGATGATATTGTTCACTGCTATAGCTTTTCTTTCCAACGAGGGGTGATGCTTTCCTATTAACCTGGTCTGGAAGATAGAACTGTCCACTGCAAGGTTTCTGCAGATTTGGGTATTATATAAAAATCATGGTTTGATATATTATAGTttaatatgttttttttcttggTGGGTGGGATTTGGGAGTGGGCGGGGTTTCTTTAGGTTGTGTTTGGGAAGAGCTGATCGGCGAGGAGAAAAAACAGACTACTATACTATTTGTAAAGCAGAACTTGCCACTTTGCATGATGTGCTCATAATGTATACTGTTTTTTTGTAGCAAACGTACATGAAACCGAGATGTGTTTCTGGCTGTGGGGGTAGGGGATACtacatttgaacctttattttactaggcacgtcagttaagaacaaattcttattcacaatgacggtcTACATGGTGTTTTCCATTCCCTCTGGTGTATCATTTGTATTGCAGCATTATACAACTGGGCATCCCGTGCACTGTGATCCTGCCTATAGCAGGCTATGAAAGGCATTGATTCAAGGCAATATTCACATGCAGGGTCGGCCCCATTCAGTTCTGTTGTCATTGGGTTATTTAAATTGAATAAAGTATATAAAATAAAACCTAGCTAgaaatattttttcttttttttttttaggaagaAATAAATAAACAAGGAATAACTTCTTTGGACAATATAATAACGATAATGAGTAAACCATCTTTAAATTGACTAAAATAATGTTTCAGTTCATCCCTTATTCACCATTTTGTTTGAATCCGGGCGTCTCGGGATGGTTTCCCCCTGTATGACTGTATTGATATACCATTTCCACAATATTTGTGGACTACCTGATAATTAACTTATCATTTTTTGTGTTCCTAAATAAATATCGTATGTTGACCTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1915787 lncRNA downstream 23041 22389022 ~ 22391573 (-) True LOC118942052
TU1915761 lncRNA downstream 52422 22361971 ~ 22362192 (-) True G1674459
TU1915760 lncRNA downstream 52906 22361500 ~ 22361708 (-) True G1674458
TU1915758 lncRNA downstream 56797 22357587 ~ 22357817 (-) True G1674456
TU1915751 lncRNA downstream 66031 22348353 ~ 22348583 (-) True G1674449
TU1915833 lncRNA upstream 18375 22464410 ~ 22465055 (-) True G1674523
TU1915836 lncRNA upstream 19346 22465381 ~ 22465616 (-) True G1674524
TU1915840 lncRNA upstream 26427 22472462 ~ 22472718 (-) True G1674528
TU1915848 lncRNA upstream 37554 22483589 ~ 22483987 (-) True G1674534
TU1915852 lncRNA upstream 41606 22487641 ~ 22488052 (-) True G1674538
XR_002469927.2 mRNA downstream 19589 22391641 ~ 22395025 (-) False LOC110499164
XR_005037965.1 mRNA downstream 25291 22387082 ~ 22389323 (-) False LOC118942052
XM_036955544.1 mRNA downstream 162168 22204992 ~ 22252446 (-) True shisa9a
XM_021575973.2 mRNA downstream 512397 21896705 ~ 21902217 (-) False maff
XM_021575974.2 mRNA downstream 513087 21896705 ~ 21901527 (-) False maff
XM_036956000.1 mRNA upstream 44703 22490738 ~ 22515812 (-) False rhbdf1b
XM_036955997.1 mRNA upstream 44703 22490738 ~ 22525188 (-) False rhbdf1b
XM_036955999.1 mRNA upstream 44703 22490738 ~ 22537691 (-) False rhbdf1b
XM_036955996.1 mRNA upstream 44703 22490738 ~ 22537696 (-) False rhbdf1b
XM_036955998.1 mRNA upstream 44703 22490738 ~ 22537702 (-) True rhbdf1b
TU1915789 other downstream 17391 22396909 ~ 22397223 (-) True G1674481
TU1915783 other downstream 20052 22391817 ~ 22394562 (-) True LOC110499164
TU1915780 other downstream 26136 22386323 ~ 22388478 (-) False LOC118942052
TU1915782 other downstream 26136 22386323 ~ 22388478 (-) False LOC118942052
TU1915580 other downstream 82808 22331350 ~ 22331806 (-) True G1674299
TU1915929 other upstream 145535 22591570 ~ 22601548 (-) True G1674592
TU1916236 other upstream 389788 22835823 ~ 22837881 (-) True msrb1b
TU1917320 other upstream 411078 22857113 ~ 22864346 (-) False G1675801
TU1917519 other upstream 748930 23194965 ~ 23204089 (-) True LOC118942011
TU1917593 other upstream 883862 23329897 ~ 23332080 (-) True G1676051

Expression Profile