RNA id: TU1915674


Basic Information

Item Value
RNA id TU1915674
length 531
lncRNA type sense_over
GC content 0.37
exon number 1
gene id foxj1b
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22461240 ~ 22465079 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTGGGTCATAGTCAAACCTATTGATCCAATTTCAATGTGTTTTTCAAGTAAtcaattgaatatatatatatatatatatcgattAGAGTCTACGATAAGAGCCTAGATGGCCATGTGTCGTGTGTCATAGGCTATGGCAAAGCAGAAAGAGGGACGGAAATGAACTGAAATGCCTCAATCAGAATACCCAAGCATATGCACTTTGAGTGACAACAGGTATGTTTGAGGATATAAAATATTTCTGCTGTGCATCAGAATGCTATTTTCCCTTGTTCCATAAAACATGCAATGTCACAGATTCAGCGTGCACACACCATCATTTGACAGCAACACCACAGCCTTCGTAGGCACTGACGGTTTTGTTCAAGTTTTCCATTTTTCTGCCAATCTTACATTTGATTGAACTCTATTAATGACTCTGTTCAGGATATACTGAGGAAATCTGAATTCTCTCACTGGGTGATTGGCTTCCATTTTGTGATAATGATTACTGATTTTTGATTGATTACGTCAAACCACGATAAATATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1915610 lncRNA upstream 45414 22416062 ~ 22418894 (+) True G1674321
TU1915611 lncRNA upstream 47548 22414914 ~ 22416760 (+) False G1674321
TU1915608 lncRNA upstream 47548 22416062 ~ 22416760 (+) False G1674321
TU1915634 lncRNA upstream 54096 22409989 ~ 22410212 (+) True G1674343
TU1915630 lncRNA upstream 58024 22405940 ~ 22406284 (+) True G1674339
TU1915679 lncRNA downstream 12797 22477635 ~ 22477851 (+) True G1674386
TU1915680 lncRNA downstream 13164 22478002 ~ 22478209 (+) True G1674387
TU1915683 lncRNA downstream 16574 22481412 ~ 22481707 (+) True G1674390
TU1915686 lncRNA downstream 20220 22485058 ~ 22485285 (+) True G1674393
TU1915694 lncRNA downstream 25960 22490798 ~ 22492131 (+) True G1674398
XM_021576115.2 mRNA upstream 75863 22347917 ~ 22388445 (+) True mrtfba
XM_021576114.2 mRNA upstream 116551 22340729 ~ 22347757 (+) True ercc4
XM_036955991.1 mRNA upstream 182470 22280000 ~ 22281838 (+) False LOC118942051
NM_001160522.2 mRNA downstream 96611 22561449 ~ 22562880 (+) True zgc:163057
XM_021576119.1 mRNA downstream 106889 22571727 ~ 22572592 (+) True LOC110499167
XM_036955556.1 mRNA downstream 109704 22574542 ~ 22575413 (+) True LOC110499592
XM_036955557.1 mRNA downstream 117978 22582816 ~ 22583667 (+) True LOC118942010
XM_021576722.2 mRNA downstream 126265 22591103 ~ 22591954 (+) True LOC110499593
TU1915004 other upstream 504681 21936642 ~ 21959627 (+) True LOC110513322
TU1914567 other upstream 618442 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 650482 21813245 ~ 21813826 (+) False tnrc6b
TU1914368 other upstream 1013962 21444883 ~ 21450346 (+) False G1673231
TU1916535 other downstream 791966 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 1115192 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 1115299 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 1115299 23580137 ~ 23581432 (+) False faap100
TU1916714 other downstream 1115299 23580137 ~ 23581387 (+) True faap100

Expression Profile