RNA id: XM_036955998.1


Basic Information

Item Value
RNA id XM_036955998.1
length 4294
RNA type mRNA
GC content 0.53
exon number 18
gene id rhbdf1b
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22490738 ~ 22537702 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGCGCGCCTGCTATAGCACGGGCACACCGGTTGGCGGTGACGTTTGACAACGCTCGGTTTCTCTCCAGGACAGCACAGTCAACCTCGCGTGTCAACGGTACAGACGGACTGAAATTCCCCGCGGAATTAGCCGAGCCGATTCGGAGACAGCCAGCGGTAGGAGAATGTCTCTGTTATGGCAACGAAGAGGACACGGTTTGTGAGAGTGACATAATCCCCTCCTTTCGGATGCAGTTATAAAATAGGTTATATTGTATATGTCATCCTGCAGTTGCATGATTGAATCATGAAGTGACTTGATTTACACGGTATATTGTCCATCGGAGTGCGACCAACAAGGTGGAGCAAGCTGTTGAGGACCGGAGCATTTTCAGTAAGCTGGCAGGCGTAGCACGGTAGGGGGCGGTAGAGAGCATGGCTGAGCCAGGCCAGCCCCAGGAGAGCAGCAGTCTGCAGAGGAAGAAACCTCCATGGCTCAGAGTGGACATCCCCCCACAGCTGTCCCTGGATGAGCCCTCAACATTCATACAGCCGGTGAAGAGGCAGGGGTTCCTGCGCAGTGTGAGCATGCCTGGCGAGAACATACAATCAGGCATCGCAACCTTTGACCCCAGCAACTATCTCCAACCCCCCTTGCAGCGCCAGCCCTCCATCACACAGACCATCAagagtgaGAAGAGGGTGCATTTCAAGCGGGTCAACACGGTCCCTCCTAAGGGCCAGAGGGGCCCCCGACGGGTGTCTGTGCTGCGCAGGCGCTCCTGTGTCCCCAAACTGGTCACCCGCCGCCGCTCGTCCATCCCCAAACAAATCATCAaGGGCACGGCAGACTGGTTCGGGGTCAGTAAGGAAAACGACAGCACCCAGcgatggaggaggaagagcctGCAGCACTGCAACCTGCGCTACGGCCGCCTCAAGGCCCAGGTGATGAGGGAGATGGAGCTGTCCAGCCAGGACAACCTGTCTCTGACCAGCACTGAgaccccaccacccctctacctccccccacaccaccaccacccccaccacccctatGCCATGCAGCGGattgtggaCCCCCTGGCGCGGGGCCGTGCATTCCGCATGGTGGAGGAGGTAGATGGTTACAGCGTACCCCAGACCCCCATCACCCCTGGTGCcgcctctctctgctccttttcCAGCTCACGCTCCGCACTCAACAGGTTACCGCGGCGACGCAAGCGAGAGTCGGTCGCCGTCATGAGCTTCAAGGCCGCCGCAGCGCTGGTTAAGGGCCGtacggtgagagagagggagggcgctGCCCGGCGGTGTCGCAGGCGGAGCTTCATGCCAGTGAGTTTCCTGGAGGACGACACAGTGGACTTCCCTGACGAGCTGGACACCTCCTTCTTTGCTAgagatggtctgaggagaggagatgaggagctGTCTACCTATGCAGACGATGTGTTTGATTCTCCGTCTGAGGCcgccattaaagaggaggagtctAACACAGCAGTGGATGAGAGTGACCTCACAGGTGGCGCCTTGGACAAGAACGAACTGGAGAGGAGTCACCTGATGCTGCCCCTGGAGCGGGGCTGGCGTAAAGGTAAAGAACCTGGACTGTCTCAGGTCCAGCCCAAGGTGCGTCTGCGCCAGGAGGTGGTGAGTGTGAGTGGGCAGCGACGGGGCCAGCGGATCACAGTGCCCGTCAAGAAGCTCTTCGCCAAGGAGAAGAGGCCCTACGGCCTAGGGATGGTGGGACGGCTCACTAACAGAACCTACCGCAAACGCATCGACAGCTTCGTCCAGCAGCAGATAGAGGACATGGACGACCACAGgccTTTCTTTACCTACTGGATCACATTTGTCCACCTGTTAATCACCATCCTGACTGTTTGTCTCTACGGCATCGCCCCTGTGGGCTTCTCCCAGCACGAGACCGTCGACTCGGTATTGAGAAATAAAGGTGTTTATGAAAATGTCAAGTTTGTGCAACAAGAAAACTTCTGGGTGGGACCAAATTCTGAGGCGCTAATCCACCTGGGGGCTAAGTTCTCCCCCTGCATGCGTCAGGACCAGCAGGTCCATGACCTGAtccaggagaagagaggaagagagcgggAGTCAGCCTGCTGTGTGAGGAACGACCGCTCCGGCTGTCTTCAGACCTCACAGGAGGAGTGCTCTTCTACTCTAGCAGTGTGGGTGAAGTGGCCTCATCACCCCAGTGCTcctctcctggaggggaaggtcCGTCAGCACGGCTCAGTCTGCCACCAGGACCCCAGAATATGCCTGGAGCCAGCCTCTGTGTCGCCTCATGAGTGGCCTGATGACATCACCAAGTGGCCAGTGTGTACCAGGTGTGAGATCACGTCCAGAGAGTACTGTGACTTTATGAAGGGCTACTTCCACGAGGACGCTACTCTCTGCTCCCAGGTGGCCTGTATGGATGATGTGTGTGGCCTGCTTCCTTTCCTCAACCCCGAGATCCCAGACCAGTTCTACAGACTCTggctctctctattcctccatgCAGGGATCCTGCACTGCCTGGTGTCGGTGCTCTTCCAGATGACCATCCTGAGGGACTTAGAGAAGCTGGCCGGCTGGCTGAGGATCTCTATCATCTACATCGTCTCTGGCATCACTGGCAACCTGGCCAGCGCCATCTTCCTACCCTACAGAGCAGAGgTGGGTCCAGCTGGCTCTCAGTTTGGTATCCTGGCCTGTCTCTTTGTTGAGCTGTTCCAGAGCTGGCAGATCCTGGAGCGTCCGTGGAGGGCTTTCACCAAGCTGTTGTGTGTCGTCATCTTTCTCTTCTCCTTTGGCATGCTGCCCTGGATAGACAACTTCGCCCACATCTCCGGATTCATCTCTGGACTCTTCCTCTCCTTCGCCTTTCTGCCATACATCAGTTTTGGCCGTTCGGACATGTACCGTAAGCGTGTCCAGATCTGTGTGTTCCTGTTGGTGTTCCTGGGTCTCTTCTCAGGACTGGCTGTACTGTTCTACATACACCCGGTCAAGTGTGAGTGGTGTGAGTACCTCACCTGTATTCCCCTCACTGACAAGTTCTGTGACAAGTACGACCTCAACGCCCACCTCCACTGACCAGGCCTTTGACTGTACAATTGCAATGACTAGAATGGACAATCTCAAAGAACTATAGCCTCACGCGCCAGGATAGCAGGACAAAAGGGTCGGCTGGTGAACAAGACTCTAAGCAACGTCACGGCATGGACCAGACCGGCGGCCATATTTGTTGTAGTATTCAGGACATTGGATGTGAAGATTGCCAATCTTGGAAAAATAACTGTTGATCTTAATAACTGTTGATCTGTCTCCATTTGATTTTGTTTATATGGACATTGCTAGCGAGTGACCTGTCACTTTCAAAGCATAAAGACTTAAAGACAGAAGGGGGGGTTAAATGTGACTGTTGCCTTGCCGCTGCTCTTATTAAAAACAGACACAACAGCACCACCTTGTGGCCGTCAGACCACATACAGCTGTGGAgggattttgttttgtatttttctaCACACGTCATAAAGCTGACGAAAAGTTGTATTGGTTTATTGGATGACCTCAGACAGGGAACTATCTCACAGGAAAGAAAAGGGATTCCTGTAGTACTGTACGATGACTGCCTCTGGTGCCTTGGTTATTACTGCCATATCTAGGTCCAagtctcaaatggcacactattctctataccagaggttcccaaactttttcactcaggcCCCCTTCCAGCGTTGGAGAACATCTCACAATGGCACAAGCATTGTTCATGACACcaagtgttcacacccctcttgttggcagaGAGTTGTAAacgcttatttcctgcaattatagACATTTTGCAGAgcctaatgtgtattcatgtgatatttgagtaactaaaaaattacaacaaaatctatgggctaaaaaacattagctgacatgggTTAGTTATAAATAGGTTAGAAATAGCTCTCTAAtgtatgcaatgactgacatgacaagagaaactaatgatgcactacccaatatCGAAAATGCACCTTTTGCATTCAACTATTACAAATTACAAGTGttttttgtttggggggggggctgccGACCCCTCACCCCCCCCTTGGGTAACCACTGCTCTGTacagtgaactatatagggaatagtgtgtcatgTGTGCCCTATATTACACTAGACAAAACACTTGTAGGTTAACATGTGTACTGCTGTCTAAGTGGTGGTGAGTGTTTGGAGGGTAGCGTTTTAGCTACCTGCTTATCTGTACCTGCCAATACAGCAACACAAACTGAc

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1915853 lncRNA downstream 2023 22488427 ~ 22488715 (-) True G1674539
TU1915852 lncRNA downstream 2686 22487641 ~ 22488052 (-) True G1674538
TU1915848 lncRNA downstream 6751 22483589 ~ 22483987 (-) True G1674534
TU1915840 lncRNA downstream 18020 22472462 ~ 22472718 (-) True G1674528
TU1915836 lncRNA downstream 25122 22465381 ~ 22465616 (-) True G1674524
TU1915873 lncRNA upstream 2137 22539839 ~ 22540038 (-) True G1674558
TU1915884 lncRNA upstream 23691 22561393 ~ 22562892 (-) True G1674564
TU1915889 lncRNA upstream 26593 22564295 ~ 22568906 (-) True G1674565
TU1915881 lncRNA upstream 34076 22571778 ~ 22572594 (-) True G1674563
TU1916131 lncRNA upstream 143415 22681117 ~ 22681850 (-) False G1674762
XM_036955994.1 mRNA downstream 44703 22414614 ~ 22446035 (-) False ubald1a
XM_036955993.1 mRNA downstream 44708 22414614 ~ 22446030 (-) False ubald1a
XR_002469927.2 mRNA downstream 95713 22391641 ~ 22395025 (-) False LOC110499164
XR_005037965.1 mRNA downstream 101415 22387082 ~ 22389323 (-) False LOC118942052
XM_036955544.1 mRNA downstream 238292 22204992 ~ 22252446 (-) True shisa9a
XM_021576122.2 mRNA upstream 65894 22603596 ~ 22607933 (-) True aqp8a.2
XM_021576121.2 mRNA upstream 71009 22608711 ~ 22615064 (-) True aqp8a.1
XM_036956010.1 mRNA upstream 91825 22629527 ~ 22636406 (-) False lcmt1
XM_036956009.1 mRNA upstream 91825 22629527 ~ 22639623 (-) False lcmt1
XM_036956011.1 mRNA upstream 91825 22629527 ~ 22639689 (-) False lcmt1
TU1915789 other downstream 93515 22396909 ~ 22397223 (-) True G1674481
TU1915783 other downstream 96176 22391817 ~ 22394562 (-) True LOC110499164
TU1915780 other downstream 102260 22386323 ~ 22388478 (-) False LOC118942052
TU1915782 other downstream 102260 22386323 ~ 22388478 (-) False LOC118942052
TU1915580 other downstream 158932 22331350 ~ 22331806 (-) True G1674299
TU1915929 other upstream 53868 22591570 ~ 22601548 (-) True G1674592
TU1916236 other upstream 298121 22835823 ~ 22837881 (-) True msrb1b
TU1917320 other upstream 319411 22857113 ~ 22864346 (-) False G1675801
TU1917519 other upstream 657263 23194965 ~ 23204089 (-) True LOC118942011
TU1917593 other upstream 792195 23329897 ~ 23332080 (-) True G1676051

Expression Profile