RNA id: XM_036956001.1


Basic Information

Item Value
RNA id XM_036956001.1
length 4858
RNA type mRNA
GC content 0.52
exon number 22
gene id arhgap17a
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22642425 ~ 22691724 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAGTGCTGGGGATGGTGTTAGACGGATGGATGCTTTTGCTACGTATACTTCCTGCCACCCATTCAACGCCCTCAGCTTGTGCTGGCAAAGAGGGGAGAGGTGTGCTGCAAGCTGGTTGGGAAAAGCGGTCGACGTTGAGTAGCCAGCCAGATATTCAGCAATGTAAAGGCTGCAACCAGTCAGTGGAACTCTGGATAGCTTTTTGATCATATCAGCTTTAACCATGTCGTCAGCTTGCGAGGGAATAGCTTTTTTCTGAAACAAGTACTTGAAGGCTAGACTAAACTTGCTAAAAAGTGACTAGCCACAGTAAGTTAGCTATTTTAATTGGTTCATAGCTTAGCTAGCTGCAAGCTAATCTTCGACAAAAAGCTAGCTGGGTATTGTGAACTTCATGACCAACCTCGTCTGATGAAGCACATCGCAGGAGTTACTTTTCCAGCTCTAAAACGTCGCAAGACTCCACTGGAGAAGGACGCAAAATGAAGAAACAGTTCAATCGGATGAAACAACTCGCCAACCAAACAGTTGGCAGAGCAGAGAAAACAGAAGTCCTCAGCGATGACCTTCTACAGATTGAGCGGCGCATGGAGATGGTGCGCGTGGTGTCCCACAATACACACAAGAGGATGGTCACGTGTCTGCAGGGCCACATTGGCACCGACGCAGAGAAGAGACATTCCGTACCACGCCTTTACACAGGAAATGGTCAGaaAAAGCTTCCTCTGACGGCGCTGTCTCAAGCCATGGTGGACGGCGGCAGTCAGCTGGGAGAGGAGTCTCTGATTGGGAAGATGATGGAGGTGTGTGGGGAGGCAGAGAACAGGCTGGCGTCAGAGCTGCTGCAGCATGAGGTCCAGATAGAGAAAGATGTCCTAGACCCACTCAACCAGCTAGCAGAGGTGGACATTCCCAACATCCTGAAACAGAGGAAGCAGCTAGCCAGGCTAGTGCTGGACTACGATTCTGCCAGAGCGAGGTGGTTGCAGGCAACCAAGTCAATAATCTCAGGAACAAACACGCAGGCACTGACGGCCAAGGCAGACCTGCTGAAAGAAGAGGTGGATGAAGCTATGAACAAAATGGAACTCTGCAAGgaCCAACTGGCTGCAGACATGTACAGTTTCTTCTCTAAGGAAGGGGACTATGCCCGCTACTATGTaatgCTCTTAGAGGCCCAAGCTGATTATCATAGAAAATCTCTGACTGTGCTGGAGAGTGTCCTGCCAACCATCCAAGCACAGCAAGACTCGTGGACGGAGAAGCCAGCGTTTGGGACGGGGCTGGAGGAGCATCTGAAGAGGAGTAGCAGAGAGATCGCTCTGCCCTTAGAGGCCTGCGTCATGATGCTGCTGGAGACTGGCATgaaggaggagGGCCTGTTTAGGATCGCAGCAGGGGCCTCTAAACTAAAGAAGCTCAAGGCTGCTCTGGACTGTTCCACCTCACAGCTGGAGGAGTTCTACTCAGACCCCCACGCTGTCGCTGGAGCCCTGAAGTCTTACCTGAGAGAACTGCCGGAACCTCTGATGAGCTTCCAGCTTTACGACGAGTGGATTCAGGCGTCTAACGTTTCAGAGCCAGACAAGCGTCTGCAGGCCCTATGGGTTGTGTGTGATCAACTACCGAAGAACAACAAAGCCAACCTAAGGTATCTGGTGAAGTTCCTGTCCAAGCTGGCTCAGGACAGTGAGGTCAACAAGATGACCCCTAGCAACATCGCCATTGTACTCGGACCAAACATGCTGTGGGCCAAAACAGAGGGGACTCTAGCTGAGATGGCTGCTGCTACCTCTGTTCACGTGGTGACCATCATAGAACCTATCATACAGCACGCTGACTGGTTCTTCCCTGAGGATGTGGAGTTTAATGTATCGGGGATGTTCGCCATGCCCACCCCTCCTTCCAACCACTCGATGGAGTACGACTGTTCCACCATCGAGAAGAAGAGGCCTGGTAGCATGGTGGGGCCAGAGAACGATAACCCTCGCAAGGACAGttTTGCTAACAAACTGTCGGACCATAACACCGTCCCCCGTAGAGGCAGCCACACCTTAGGTAGAAAGCAGCATGCTTCACCCGCCTTCCAGCCCCCCTTACCCCCGGTAGAGGCCCCAGGGCCTGGGCAGTTCACAGGGTGCGTGGCTGAGCTCCAGGCCCCACCGGGGGGCATGGCGTTGGAGGGCTGCCAGCCTAGCCTGGCACTGAGTATGGCTGCCCTGGTGGCAGCGCAGCAGCTTCTCGCTACTACCGCTGAGGAACTCAGCAACCCAAAGCGTGAACCCAGTTCCACCCCGACCCTCCACCAGAGGAACGGTTCAGGTGGGGGCCACCCGGGCACGGCCAGCTCAGCCGGAGGAGGGGGAGCTGGGGGACAGctgggagtgggaggccctggggCTGGATCCATGGGGCCCAGTCCACACATGATGCGCAGAGGTACAAAGAAGCCGGCCCCTGCCCCTCCCAAGCCGCTCAATCCCCCTTCAGGCCAGTCCAGTAACCCTACCAACCACCACCCCTTCTCAGGCCAGGGCCAGTCCCTCAGCCCCTCTCCCAGACCCCTCTCTTCCTCAAGCCACTCCCCTACCTCACCCGTCTCCCAGCCCTCTACCACCCACCGCCGCCAATCCAGCAACCAGCCCCCCATCCAGGCCCCCAACCACCCGCCCCCACAGCCCCCCACACCCTCACAGGTCAGTCCCCCGCCCCACCCTAGGGCCCTCAGCCAGCCCGCAGGAGACTACCCGGGGGCGGACCAGTCTCCTCCAGACACCCCCACCCCGCCTGacacccctccaccctccaccaccctcctggACATACCCGGTGCCCATCCtggctccccctctcccttccagtCAGGCTCCCTCCCCCGGCCGCGCCCCGTCCCCAAACCCAGAAACAGGCCCAACATCCCTCCGCCCCCTCAGCCCCCCACACAGGGAAACGATACCAACGGGATCTGCAGCACAGCCTACAAAATCATGGGTTCAGGAGCATTTATGAAAGGTTTGTCAGACCCAGCCCTGTCTCTCAAAGGGTTGACTCGAGCCTTCATCCCTGAGTTTGCTGTGGACCAGCAGCCAGTGACCGCCCCCTCCATGACGTCCGTGCCCCAGCCCAAAGACTCAGACCTGGACACAGAGAGTACCGTTCTATAAGGAAGAGGACTGgccttgtctctctgtcccctctccatctcctctccaggTGTGGTTAGAAGTTGACCCTAACCACAGGTCCAGGGTCAGATATTAGTGTCATCCCCTAATGGTTAACTTTAGGTCTAGGGGTAGGGTGATCTGGTCCTAGACTTGTGGTTAGTGTCAACTTCTACCTCAAGCTCCCCTCAGATCACCACacatctgctgctctctctcaacTCCAACTCCCGGTGTCCTCCACACACTAACTTTCCCTTCACCACCCACTTGGTTCGCTCTACTGCAGGCCTGTTACAGCTACAACTCCATACAGTCAACTCAACCACCCCAGTGGAACTACAGAACAGGCCTCCCCCTGGCCCCTCCCCACCAGGAAATCGTAACTGTAGCACTGATGAAGCCTCGATAAAGCTTTGTAGATTTTGGGGGGATGATGAGGTTTGGATTGAAAACGGTATGCATTTGCATGGGATGTTGCACCTTAATGAGTTTTAAGGGCCCGGGGCTGGGTTTCTAAGCTAACATACGGAATTGTTTTATGATGGTTAAGGAACTGCTAGTAGAGTGGGTTGTTAACAGTGGACCGACAGACTTCTTTGATATTGGTGTGTTGTTCTTGATGATGGCCTTAGTTCAAGAAATGAAAAATACTATTTGTAAATGTGAAGCACAGTAAACGTGGGTAAAAGTAGAATCCCGCCAAAATAATAACTGTTGCTGAAGTGTAGCAGGTTTCCAGTCTATCTCACAattatacctttttttttaatCCCTGTTTTTGTATGAAACCCATCCTTTGCTCTCTGTATTTATTTCCTAAAACACATTCCCTGTAGCTTGAGTTAATAATCATGCAGTTTTCTGAAGCATGCCTTACTGGTTCCATAACTCGTAGCAGGGATAGGTCTATATACTTTCAGTGTACATGCTTATCCTCTTGGCTTGTAGGTGCCTTCCTAATCTTCTGTGTTTACGTCTATGTTGCTGGGGCATTAAAGTGACAGTTCCTGTATAAGTGAATATAGGAAAGGACTGTTTTAAGCGCTTATACTGTAGCTACCTTGTCATCTGACTAGTGAATCACTTCAACAGCTGATATTGAACCAAGTCTAAACCCCACAAGCGCTTGCTTTCCAGGGAACAGGTTTCTATATGGAAGATCATTCTGCTCTACCTTTCCCACTGAGCTGGGTTTTACACACAAACCAATGTAACAACCTAGTCGTGAGGTGGTGTTGGATACACTAGACCAGAAAAGCTTCATTCTCTTTTATTTTTATACACGTTGCTTTTTCCTTGAGTATAGTGCAGGGTTGTGCTCCTAGAGAAGAGACCCTGAATGGTATCAACTAAAGGGCACATTTCTGGATGCTTTAGTTGCACTGAAAACATGTTCAGTATTTGTACTGCTTTTCAGAGACCATCATCATCCATGTAGTCTTGCTGAGATTCCCCTCTATCTCATCTTTTCCTTTAACTTGCTGCCTTATCCTTCTGCAGAAAGAGTACCTTGTTTCGAGGCTCTGAAAGATGAACAAATGCCATTAAACTACAAATGTTAAAGCTGCGTTTTGAGCTCAGCTAGTTTTGTATGCAGACTGAGCTGAAACaagaaataaatcaaatgtaaaatGACTGCTTGGTTATACTCCCTTTCTGAATAAAGTATATGAAGAAAAATGTGAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1915977 lncRNA upstream 2501 22639554 ~ 22639924 (+) True G1674618
TU1915975 lncRNA upstream 5534 22636657 ~ 22636891 (+) True G1674616
TU1915748 lncRNA upstream 85215 22556984 ~ 22557210 (+) True G1674446
TU1915741 lncRNA upstream 91654 22550501 ~ 22550771 (+) True G1674441
TU1915734 lncRNA upstream 101276 22540922 ~ 22541149 (+) True G1674434
TU1916019 lncRNA downstream 7209 22698933 ~ 22699144 (+) True G1674659
TU1916025 lncRNA downstream 13836 22705560 ~ 22706269 (+) True G1674664
TU1915985 lncRNA downstream 57361 22749085 ~ 22765432 (+) True G1674625
TU1916221 lncRNA downstream 136843 22828567 ~ 22828796 (+) True G1674840
TU1916229 lncRNA downstream 140395 22832119 ~ 22832340 (+) True G1674848
XM_021576120.2 mRNA upstream 40884 22600486 ~ 22601541 (+) True LOC110499168
XM_021576722.2 mRNA upstream 50471 22591103 ~ 22591954 (+) True LOC110499593
XM_036955557.1 mRNA upstream 58758 22582816 ~ 22583667 (+) True LOC118942010
XM_036955556.1 mRNA upstream 67012 22574542 ~ 22575413 (+) True LOC110499592
XM_021576119.1 mRNA upstream 69833 22571727 ~ 22572592 (+) True LOC110499167
XM_021576133.2 mRNA downstream 39606 22731330 ~ 22738523 (+) True zdhhc4
XM_021576135.2 mRNA downstream 49298 22741022 ~ 22743986 (+) True pgp
XM_021576136.2 mRNA downstream 52500 22744224 ~ 22748899 (+) True bricd5
XM_036956015.1 mRNA downstream 149544 22841268 ~ 22865328 (+) True tex2l
XM_036956016.1 mRNA downstream 222398 22914122 ~ 22916645 (+) False LOC110499186
TU1915004 other upstream 682798 21936642 ~ 21959627 (+) True LOC110513322
TU1914567 other upstream 796559 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 828599 21813245 ~ 21813826 (+) False tnrc6b
TU1914368 other upstream 1192079 21444883 ~ 21450346 (+) False G1673231
TU1916535 other downstream 565080 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 888306 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 888413 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 888413 23580137 ~ 23581432 (+) False faap100
TU1916714 other downstream 888413 23580137 ~ 23581387 (+) True faap100

Expression Profile