RNA id: TU1915965


Basic Information

Item Value
RNA id TU1915965
length 2098
lncRNA type sense_over
GC content 0.47
exon number 2
gene id arhgap17a
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22642425 ~ 22691724 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCCCTCAGCCAGCCCGCAGGAGACTACCCGGGGGCGGACCAGTCTCCTCCAGACACCCCCACCCCGCCTGacacccctccaccctccaccaccctcctggACATACCCGGTGCCCATCCtggctccccctctcccttccagtCAGGCTCCCTCCCCCGGCCGCGCCCCGTCCCCAAACCCAGAAACAGGCCCAACATCCCTCCGCCCCCTCAGCCCCCCACACAGGGAAACGATACCAACGGGATCTGCAGCACAGCCTACAAAATCATGGACCCAGCCCTGTCTCTCAAAGGGTTGACTCGAGCCTTCATCCCTGAGTTTGCTGTGGACCAGCAGCCAGTGACCGCCCCCTCCATGACGTCCGTGCCCCAGCCCAAAGACTCAGACCTGGACACAGAGAGTACCGTTCTATAAGGAAGAGGACTGgccttgtctctctgtcccctctccatctcctctccaggTGTGGTTAGAAGTTGACCCTAACCACAGGTCCAGGGTCAGATATTAGTGTCATCCCCTAATGGTTAACTTTAGGTCTAGGGGTAGGGTGATCTGGTCCTAGACTTGTGGTTAGTGTCAACTTCTACCTCAAGCTCCCCTCAGATCACCACacatctgctgctctctctcaacTCCAACTCCCGGTGTCCTCCACACACTAACTTTCCCTTCACCACCCACTTGGTTCGCTCTACTGCAGGCCTGTTACAGCTACAACTCCATACAGTCAACTCAACCACCCCAGTGGAACTACAGAACAGGCCTCCCCCTGGCCCCTCCCCACCAGGAAATCGTAACTGTAGCACTGATGAAGCCTCGATAAAGCTTTGTAGATTTTGGGGGGATGATGAGGTTTGGATTGAAAACGGTATGCATTTGCATGGGATGTTGCACCTTAATGAGTTTTAAGGGCCCGGGGCTGGGTTTCTAAGCTAACATACGGAATTGTTTTATGATGGTTAAGGAACTGCTAGTAGAGTGGGTTGTTAACAGTGGACCGACAGACTTCTTTGATATTGGTGTGTTGTTCTTGATGATGGCCTTAGTTCAAGAAATGAAAAATACTATTTGTAAATGTGAAGCACAGTAAACGTGGGTAAAAGTAGAATCCCGCCAAAATAATAACTGTTGCTGAAGTGTAGCAGGTTTCCAGTCTATCTCACAattatacctttttttttaatCCCTGTTTTTGTATGAAACCCATCCTTTGCTCTCTGTATTTATTTCCTAAAACACATTCCCTGTAGCTTGAGTTAATAATCATGCAGTTTTCTGAAGCATGCCTTACTGGTTCCATAACTCGTAGCAGGGATAGGTCTATATACTTTCAGTGTACATGCTTATCCTCTTGGCTTGTAGGTGCCTTCCTAATCTTCTGTGTTTACGTCTATGTTGCTGGGGCATTAAAGTGACAGTTCCTGTATAAGTGAATATAGGAAAGGACTGTTTTAAGCGCTTATACTGTAGCTACCTTGTCATCTGACTAGTGAATCACTTCAACAGCTGATATTGAACCAAGTCTAAACCCCACAAGCGCTTGCTTTCCAGGGAACAGGTTTCTATATGGAAGATCATTCTGCTCTACCTTTCCCACTGAGCTGGGTTTTACACACAAACCAATGTAACAACCTAGTCGTGAGGTGGTGTTGGATACACTAGACCAGAAAAGCTTCATTCTCTTTTATTTTTATACACGTTGCTTTTTCCTTGAGTATAGTGCAGGGTTGTGCTCCTAGAGAAGAGACCCTGAATGGTATCAACTAAAGGGCACATTTCTGGATGCTTTAGTTGCACTGAAAACATGTTCAGTATTTGTACTGCTTTTCAGAGACCATCATCATCCATGTAGTCTTGCTGAGATTCCCCTCTATCTCATCTTTTCCTTTAACTTGCTGCCTTATCCTTCTGCAGAAAGAGTACCTTGTTTCGAGGCTCTGAAAGATGAACAAATGCCATTAAACTACAAATGTTAAAGCTGCGTTTTGAGCTCAGCTAGTTTTGTATGCAGACTGAGCTGAAACaagaaataaatcaaatgtaaaatGACTGCTTGGTTATACTCCCTTTCTGAATAAAGTATATGAAGAAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1915977 lncRNA upstream 48202 22639554 ~ 22639924 (+) True G1674618
TU1915975 lncRNA upstream 51235 22636657 ~ 22636891 (+) True G1674616
TU1915748 lncRNA upstream 130916 22556984 ~ 22557210 (+) True G1674446
TU1915741 lncRNA upstream 137355 22550501 ~ 22550771 (+) True G1674441
TU1915734 lncRNA upstream 146977 22540922 ~ 22541149 (+) True G1674434
TU1916019 lncRNA downstream 7217 22698933 ~ 22699144 (+) True G1674659
TU1916025 lncRNA downstream 13844 22705560 ~ 22706269 (+) True G1674664
TU1915985 lncRNA downstream 57369 22749085 ~ 22765432 (+) True G1674625
TU1916221 lncRNA downstream 136851 22828567 ~ 22828796 (+) True G1674840
TU1916229 lncRNA downstream 140403 22832119 ~ 22832340 (+) True G1674848
XM_021576120.2 mRNA upstream 86585 22600486 ~ 22601541 (+) True LOC110499168
XM_021576722.2 mRNA upstream 96172 22591103 ~ 22591954 (+) True LOC110499593
XM_036955557.1 mRNA upstream 104459 22582816 ~ 22583667 (+) True LOC118942010
XM_036955556.1 mRNA upstream 112713 22574542 ~ 22575413 (+) True LOC110499592
XM_021576119.1 mRNA upstream 115534 22571727 ~ 22572592 (+) True LOC110499167
XM_021576133.2 mRNA downstream 39614 22731330 ~ 22738523 (+) True zdhhc4
XM_021576135.2 mRNA downstream 49306 22741022 ~ 22743986 (+) True pgp
XM_021576136.2 mRNA downstream 52508 22744224 ~ 22748899 (+) True bricd5
XM_036956015.1 mRNA downstream 149552 22841268 ~ 22865328 (+) True tex2l
XM_036956016.1 mRNA downstream 222406 22914122 ~ 22916645 (+) False LOC110499186
TU1915004 other upstream 728499 21936642 ~ 21959627 (+) True LOC110513322
TU1914567 other upstream 842260 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 874300 21813245 ~ 21813826 (+) False tnrc6b
TU1914368 other upstream 1237780 21444883 ~ 21450346 (+) False G1673231
TU1916535 other downstream 565088 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 888314 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 888421 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 888421 23580137 ~ 23581432 (+) False faap100
TU1916714 other downstream 888421 23580137 ~ 23581387 (+) True faap100

Expression Profile