RNA id: XM_021576133.2


Basic Information

Item Value
RNA id XM_021576133.2
length 1481
RNA type mRNA
GC content 0.47
exon number 7
gene id zdhhc4
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22731330 ~ 22738523 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaatgtttgaaacGTTAGCCACATGCTACGGAAGTTTTCCATTTTGTATCGCAAAGTATAATGGATTTATAGTCCAGTTGGGAGCGGTAATGCgacatattggatgccaaccgctgtTAAACTCCACCGATCTGACCGATGAAGAAGAAGAATGCTACGGAAGTGAAGACACCCACACCGTGCAAGAGAATGGTCCAAGGAAGTTAATGAAGTCTACTGCAACGCTAGTTAAGGCACACATTTCAATGATGAATTGTACATCCCACAAAGAGGGTTAATAACAAATGGATTTCCTCACACTATTTGCTATCTATGTGGGGGTTGTGCTGACCTGCATTGCCTTGGTTTGTAAATATTCTGGTCAGCAACAAAGTCCTTTTGGTTTACTTTTCGACTCGGTGACAAAGGTAATAGCACCTTGGACACCACTATGGCTTCAAAGCTTTACACAGAGGACCTTGCACATGCTATTTCATCAACGGAACAGAATGTTTATCTATCTCCATATCTTACTGGAGGGGGCCGTGTACACAGAGTTCACCTATGAGGTGTTTGGATACTGCAGGGACATGGACACCACTCTCTCTAGCCTATCAGTCCCTTATGTTCTACTGGTGGTCAAATCCTGCTTCTTCTACCTCTGCATTAGAAGGGAACCTGGTACAGTTACAAAGAAGCGCCATGCTGGTCAGCTCCAGGTATACCCATATGACAAGAGGATGTTCCACCCAGGAGTCTGCTGTCCAACGTGTCAGCTGGTCAAACCTGCTCGCTCAAAACACTGTAGAGTCTGCAATAGGTGTGTGCAGCGCTTCGACCACCACTGTGTCTGGGTCAACAACTGCATCGGCGCTCAGAACACCCGGTACTTCCTTCTCTACCTGCTGAGTGTGTGTGCCATGGCAGCAGACATGGCACTACTGACGGTGGACATGTTACTGCACGCTGTGGTGCGGTCAGGCATCCTACAAGCCCGTTACATAGATGATGATGGGCAGCAACAGCAGGCAGGGATGCTCTTTGTCATACAGCACCTGTTCCTGACCTTCCCCAGGATCGTGTTTATGCTGGGCTTCCTGGTCTTCGTCTTCCTGCTCCTGGCAGGCTACACCATGTTCCACTCCTACCTAGCTCTGGTCAACCAGACCTCCAACGAGTGGTACAAGGGACGAGGGAATGTCTGCCAGCACTGCCACCCCTCACCTGACCACTTCTGTGGTCTGCCAGCCTCTGACCAGTCCAAAAGGTGGTTCTATAGTAGAGGGGTGCTTAGAAACCTGGGGGAGATATTTTTCCCCCTCCGTCCCGTGCAGAAAAAAGATAATTGAGTTCAACAGAGGCAGTTTATAGGCCCACTAGCTACAGTACTGAATGTttgtcatttgtatttattttttaaagatatgGTTGTTGGTATGTGAATTTTGGGGGATCTTAAATATTTTTCTAACTGGCAATAAAGCTTCTGTATACACCTTT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K20003 ZDHHC4, SWF1; palmitoyltransferase ZDHHC4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1916025 lncRNA upstream 25061 22705560 ~ 22706269 (+) True G1674664
TU1916019 lncRNA upstream 32186 22698933 ~ 22699144 (+) True G1674659
TU1915965 lncRNA upstream 39614 22688126 ~ 22691716 (+) False arhgap17a
TU1915967 lncRNA upstream 39614 22688126 ~ 22691716 (+) False arhgap17a
TU1915963 lncRNA upstream 39614 22688333 ~ 22691716 (+) False arhgap17a
TU1915985 lncRNA downstream 10562 22749085 ~ 22765432 (+) True G1674625
TU1916221 lncRNA downstream 90044 22828567 ~ 22828796 (+) True G1674840
TU1916229 lncRNA downstream 93596 22832119 ~ 22832340 (+) True G1674848
TU1916268 lncRNA downstream 200786 22939309 ~ 22940706 (+) True G1674881
TU1916300 lncRNA downstream 211863 22950386 ~ 22952493 (+) True G1674902
XM_036956001.1 mRNA upstream 39606 22642425 ~ 22691724 (+) False arhgap17a
XM_036956002.1 mRNA upstream 39606 22642425 ~ 22691724 (+) False arhgap17a
XM_036956004.1 mRNA upstream 39606 22642425 ~ 22691724 (+) False arhgap17a
XM_036956007.1 mRNA upstream 39606 22642426 ~ 22691724 (+) False arhgap17a
XM_036956003.1 mRNA upstream 39606 22642428 ~ 22691724 (+) False arhgap17a
XM_021576135.2 mRNA downstream 2499 22741022 ~ 22743986 (+) True pgp
XM_021576136.2 mRNA downstream 5701 22744224 ~ 22748899 (+) True bricd5
XM_036956015.1 mRNA downstream 102745 22841268 ~ 22865328 (+) True tex2l
XM_036956016.1 mRNA downstream 175599 22914122 ~ 22916645 (+) False LOC110499186
XM_021576148.2 mRNA downstream 175620 22914143 ~ 22916645 (+) False LOC110499186
TU1915004 other upstream 771703 21936642 ~ 21959627 (+) True LOC110513322
TU1914567 other upstream 885464 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 917504 21813245 ~ 21813826 (+) False tnrc6b
TU1914368 other upstream 1280984 21444883 ~ 21450346 (+) False G1673231
TU1916535 other downstream 518281 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 841507 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 841614 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 841614 23580137 ~ 23581432 (+) False faap100
TU1916714 other downstream 841614 23580137 ~ 23581387 (+) True faap100

Expression Profile