RNA id: XM_021576143.2


Basic Information

Item Value
RNA id XM_021576143.2
length 4674
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC110499185
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 22918884 ~ 22938915 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGAAGTGAATCGTACACATTGTTTGTTGTCGATCAAGATGGAGTTCCTTTTGGGAAATCCATACAGTACTCCGGTGGGACATTGTATTGAGAGAGCCACTGATGGCTCCCTTCAGAATGAGGACTGGGCCCTCAATATGGAAATATGTGACATAATCAATGAAACCGAGGATGGGCCCAAGGATGCCATCAGGGCAATGAAGAAGAGGCTGAACGGGAACAAGAACTACAGGGAGGTGATGCTGGCACTCACCGTCCTGGAGACATGTGTGAAGAACTGCGGGCATCGTTTTCATGCCCTCGTCACCAGCAGAGACTTCATAGATGGCGTGCTTGTAAAAATCATCTCGCCTAAAAACAACCCTCCCACTATCGTACAAGACAAAGTGCTCGCCTTGATCCAGGCGTGGGCTGACGCGTTCAGGAGTAGTCCAGACCTGACGGGTGTGGTCCATATCTATGAGGAGCTGAAGAGGAAAGGCATTGAGTTCCCCATGTCTGACCTGGAGACCCTGTCTCCAATCCACACTCCTCAACGACTGTCGGCTGGCTCTGAGGTGAACCAAGCCACACTGAAGGCCACCGCCCCTCCTCCAGCCCAGCCTATCCTCCACCAGCAGCCTCCTCCCCATGCTGTCTCCGCCCCACCCTTTGCAGCATCTGTCCCTCCTACCTATTCCGCCCCTCAGGTCCCCAACCTCGGTGCCTCTGGGTCTATCAACCCCTCACCTGACCAGATTTGCCGGCTGCGCAGTGAGCTGGACATTGTGCGTGGCAACACCAAGGTGATGTCAGAGATGCTGACAGAGATGGTTCCTGGACAGGAGGACCCCTCGGACCACGAGCTCCTGCAGGAGCTGAACCGGACATGCCGGGCCATGCAGCAGAGGATAGTGGAGCTCATCTCCTGCGTGTCTAACGAGGAGGTCACAGAGGAACTACTGCACGTCAACGACGACCTCAACAACATCTTCCTACGCTACGACAGGTACGAGAGGTTCCGGTCAGGCAGAGCATCTCAGGGTATCAACAATGGGGTCCTCAGTGAGGCTACAGAGGACAACCTgatagacctgggccctggctcTCCTGCTGTCGTCAGCAACATGGTCACCACCACTCCCCCGTCCAGCCTGCCCCCTTTCTACACCACCCCCGCTGCACGGCCTTCCTCACCTGCCTCCCTGGCCTCTCGGCTAGCCGGCCTTGATGTGGGTGACAGTGTGAGCAGCACTTTGAGCTCTCTGCCCAGCTGTAAGCCTCAGGACGACTTTGACATGTTCGCCCAGACCAGGACCGGAGCTCTGCCTCTGACCACCGAAACACTCGTGACAGCTCCTCTAGAGGACCTTAATGCTGTATGTGGGATTGGGCTGCCTCTTCTGGAAGTCAGGCGGCAGCCCGCAGGAGGGCAAGGAgatgagggagaagagggggtgaccagtgaagAGTTTGACAAGTTTCTGGAGGAGCGGGCGAAGGCAGCAGAAACGGTGCCCAGCCTCCCTTCGCCCCCTAGTGGTGACCCTGGTGCAACTACAGGCACACTCAAGAAGAAGGCTGAAAGACCAGATGACGCCCTGTTCGCTTAGTACAGtggttttcaaacctctcctcggggactcCCAGACGTTTCACAATTTAGTTTTAGCCCTGAACTAGCTGAGTTGATTCACCTATTCAAGGGCTTGATagttagttgacaagttgaatcaggtgtgttagctctTGAATAGTTCAAATTCATGGAACGACTGtgggtcccagaggagaggtttgaaaaccCCTCGCTTAGTAGACCTTTTAACCTTAACTTCTGACCTGGCCAGCGACCTCAGTCCCCAGACTTTTATCTGTGACAAGCACACACACTTTCTCATCCTCCCCCTCTGGTTCTCTCTACCTTCAAAACTAACCCTCTACTACCCAGCAACGCATTGATTTACTACACTACAAAGGGAACCCCCGATTTTGATATCCCCCCTCTTTCAGAAAGAGACCAGCTTCATTCGGGAGAAGACCGCCACGTTATTCCATAATCAACATTCCTTATCTAACAGTTGATGGTTTGGAACAGTCTCCAGCCTCTGAAGAACTGTGGAGTATCAACAACAACGGCCGTCTTTATAAACCAGCAGCTCACCCTGTCCCGGGGCTGGTCTTCTTCTGAAGGGTAATATGAGACATACCCAACCTACAGGACTACCCATATTCTGCTCCGTTATGGCAGCAAGAAGCCATCCCTATCCTGTCGTCCCCTAATCTACTGCATGCATTATCAGATCCATCCACCCTTCAATCCCTTGAAGGGTCGTCAAAGGGAATTCAATGAAAACTAGGTACAATTATTGTTAACCTTTTTTATTGTAGGTCAGATGGGGGAAGGTAGCATTAAAATATGATGAGATATATTAATGGGGAATATGCTGGATCATTGTATGTTTTGACTATGCGTTTCATTCCTAGTCGATATTTTCTGGTTGTCTTATTTCATCAATTTAACTTCATGGTTTTGAGTGTGGCTTTGTTGTATAACTGTAACATAATGACATGTAGAATCGCTGTGTGTATATTCAATCAAGCAGAATAAGGTAAAGAAATGGTGGATGACGGGAGATCTGTTATGAGGGCATTGGAGCCTGTTACAGTAGGTCTACCTGGATATAACATTTCACAGCCATTACCCAAAAAGGGTATCAATAGAAAAGGGAAGTGGATATGTGATTTGTCCACTACAGAATTACACTACAGGGCATTTTGCTTTCAAGGGATGAAGTATTTCTAGGGATTGATGCTATCATCTTCTCTACGCCTTTAGAGATTGATCTATTTTACCAGCTTAGAATTCTAGAAGATTATCTGGAATGTTATTTTGGAGATTTATATACGATTTCTGATTTATTTTCAgatgatgttttttttaagtgaGACAACTAAATAATTAACGTCACTTAAGAAAATGCACTGTTATGTTAAATGAGGTGTTATGTTTATCTTAACAAATAAGTAGTACCATTTACCTGACAATGATTTTCTGTGTATCCATATGCTGAAGGACCagtacaggtacagtgctgatgggaAAGCATCATCTAGATGTCGTCATGTGGCCTAAGCATGATTGCATCACATCCATAGTGAACGCACTACCGTATCATACTGTAAGATTCAGTCAGGCGTAACACTGTATCAGTCAGTCTGAGAAGGATAACCGTTTCTTGTTAAAGCCCTGTTTTAGTAGTCTTCACTACAACCTGAACAGACTGAACATTGTATGTCTGGTATTGAACAATAACATAATTTATGGACCAACGTTTTACAAAGTGGATGCGATAAAATGAACCTATAGAAGGGATGGTAATGAATATCATGAAGGAAATATAGGAACGGGGATCTGTTTGGTCTCTGGTTGGAGCGTCAAAGGTTGTTTATTTTATTGTTTAATCACCTGGACTCTTGTGTACCATTTCCTGTTCTTGTCTCTCGTTGGCTTGCTAGCTGTTCTGGCATGTCACTCCGATGCTAGCCAGTTCGCTCTGGGCTAATCCGCTGATCAAAACGGTGACGGTGCTGAAAAGAGGGATAGGCTGTGCGAGAGACTCGCCATTTAGAAAAAGTGACATTCATGTTTTCAGAAACGGTAACACTACTTACTAGTATGAGCAAGAACATTGAGTATTGCAAACCGAGATCTTTATTCTCTTTCTTGATGATGATAATACACGTGCTGTTTCATACAATCACAATGAATTTAAAACAATGTAACACTTGATAGTCACTCACGACCTTATTCTACCCTTATTTTATTGTTCAAATATCTAGTTGAGCGGGTTGGTATATTTAACATATCTGTAATCAATGGAAAATGTTGCAAAAATATTGACAAGTGTAGGAATAATTTATTTAGGATTTTCTTCTGATCTCTGTTTTTGAAATTGTTTTATTGTACAAAAGTAGAATGACATTAACTTTACGGGAGAGATTAGGGGTTTTCATGTTAATTGTGTGTTAAACATGTTTTATGGAGTTTGATAATTTCTTATGCTGATTCAATGGTAAAGATCATGTAAATGTTTCCAGATGAATTTCACTCTACAGTAACTTTTAATGTCACTATTTATGACAAGTGTCCACTCTGtgattggtttgtttgtttgtaactGTAAGCAAAGAACCCTATTGAGTTACATTTTTTCCATGGTTTGATGAACAAGCAGTACATTGCTAAACGAAAGACTCTTTGATAGAAATGTTGACATTGCACATTATTAAaaggttttcccatctctctGAATGGAATActttaagtgtgtgtgtacaACTGTTGCCCTACGCTGAGACAGTAGCCCTGTACATTTGATGTATTGGAGGAGTAAAAATATATTGCTGTGTGTGCAATCCAATATGCGTAGTATAAAATGTATAGCTTGATATTGGTCTGGCTTGCTCAGTGGAACTATGGGTCTATACATGATCTTGTATAATTAAGGCAAATATAAATATTAGCTTGCCAGGTGGTCACCTCAAAGCCTGCTCTTAGAAAGAATATGTGTGTATGGTAAAACACAAAGGGACGTTTGTGTGCTGGCTGCTGCTGTTTCCTGACTTTATCTAGCTCTATATTGTTTGACTCATGCATGTGTTGAACTCCAATAAAAAACTATAGTAGTATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1916229 lncRNA upstream 86544 22832119 ~ 22832340 (+) True G1674848
TU1916221 lncRNA upstream 90088 22828567 ~ 22828796 (+) True G1674840
TU1915985 lncRNA upstream 153452 22749085 ~ 22765432 (+) True G1674625
TU1916025 lncRNA upstream 212615 22705560 ~ 22706269 (+) True G1674664
TU1916019 lncRNA upstream 219740 22698933 ~ 22699144 (+) True G1674659
TU1916268 lncRNA downstream 394 22939309 ~ 22940706 (+) True G1674881
TU1916300 lncRNA downstream 11471 22950386 ~ 22952493 (+) True G1674902
TU1916313 lncRNA downstream 30225 22969140 ~ 22969575 (+) True G1674912
TU1916342 lncRNA downstream 62670 23001585 ~ 23005692 (+) True G1674940
TU1916349 lncRNA downstream 70829 23009744 ~ 23010909 (+) True G1674946
XM_036956016.1 mRNA upstream 2239 22914122 ~ 22916645 (+) False LOC110499186
XM_021576148.2 mRNA upstream 2239 22914143 ~ 22916645 (+) False LOC110499186
XM_021576147.2 mRNA upstream 2239 22914145 ~ 22916645 (+) True LOC110499186
XM_036956015.1 mRNA upstream 53556 22841268 ~ 22865328 (+) True tex2l
XM_021576136.2 mRNA upstream 169985 22744224 ~ 22748899 (+) True bricd5
XM_021576153.2 mRNA downstream 264848 23203763 ~ 23252161 (+) False baiap2l1a
XM_021576154.2 mRNA downstream 264848 23203763 ~ 23252161 (+) False baiap2l1a
XM_021576156.2 mRNA downstream 264848 23203763 ~ 23252161 (+) False baiap2l1a
XM_021576157.2 mRNA downstream 264848 23203763 ~ 23252161 (+) True baiap2l1a
XM_036956022.1 mRNA downstream 313885 23252800 ~ 23269058 (+) False LOC110499192
TU1915004 other upstream 959257 21936642 ~ 21959627 (+) True LOC110513322
TU1914567 other upstream 1073018 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 1105058 21813245 ~ 21813826 (+) False tnrc6b
TU1914368 other upstream 1468538 21444883 ~ 21450346 (+) False G1673231
TU1916535 other downstream 317889 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 641115 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 641222 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 641222 23580137 ~ 23581432 (+) False faap100
TU1916714 other downstream 641222 23580137 ~ 23581387 (+) True faap100

Expression Profile