RNA id: XM_021576154.2


Basic Information

Item Value
RNA id XM_021576154.2
length 3261
RNA type mRNA
GC content 0.45
exon number 14
gene id baiap2l1a
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 23203763 ~ 23252161 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACTAAAGCAGTGACGTCACGGATCCTACCTTTTCTGTCTCTCGCCCCTCCGACACACACACGGTGAAGTTTGACAGTCTCCGTTCAGGCAGCGCAGCGGTTGATGCCGGTTTGTTTGGCCTCTGGTGCACAGTTGCGCTTCTGCTCTCAATTGTAAACTACTCCTGGAACAACTAAACAGCCCACCCTTGGATTTGAAAGGAATTATATAGACTTCGAGTGATTGGCTTTGGtttagttttttttctccatcttGCAGAGACTGAGAAATGACTGCCAACATGTCTCTGGATCATGACGATGTGAATAAACTGACCGAAAGTACATACAAGAATGTGATGGAGCAGTTCAACCCAGGTCTGAGGAACCTGGTCAATCTGGGGAAGAACTATGAGAAATCTGTAGCCGCGATGACTCTTGCTGGGAAGGCGTACTTTGACGCTGTGTCAAAGATAGGAGAGACTGCTTCCGTGTCCCCTGTCTCCAGAGAATTAGGTGTGGTTCTGATGGAGATCTCTGAGGTGCACAGGAAGGTTCACCAGGAGCTGGAGGAGAACTTCAAGCGGTTCCACAATGAAATCATTGCTGAGCTGGAGAGGAAAACAGAGATGGATGTCAAATATATGACTGCCACATTCAAGCGGTACCAGACGGAGCACAAGCTGAAGCAGGACTCTCTGGAGCGCTCTCAGACGGACCTGAAGAAGCTGCGGAGGAAGAGCCAGGGGAAACAAGTCACCAAGTACGAGATCAAGGAGAACGAGtATATGAAGACCATCTCGTCGCGGCAGAGTGACATGCAGAAGTTCATCGCTGATGGTTGCAGAGAGGCCCTCCTGGAGGAGAAGAGACGATTCTGCTTTCTGGTCGACAAACACTGCATGTTCTCCTACCATGTCACCGCCTTCCATGAGAAGGCCAAAGAGCTGCTGGCGGTGAAGCTGCCCAGCTGGCAGGATAAATGCAGCGATGCCACCAAGGTGCCTGACACGGTGATGACCATGATAAAGGGGCTCCGCACTCCCGTGTCTGGATCCCCAGAAGCCTCGCCTCGCGTTGAGCGCTACAACAGGAACAATGGGGACTCGATGGTTCCCCCACCAGCCCCCCAGCTGAAGGCCCAGATCAGTCCACTGGTTAACATGTTCAACCAGGACGCCTCCATCACATCCACATACGCCTCCACATCAGACCACAACTCAGACCAGGGCAGTATGGAGGACGGTGgcagtctgtctctgtccaggTCGGTGTCGATAGGTTCAGGGCTGAACGTGGGCAGGAAGCAACGGGTCAGGACCATCTTCCCTCACACGGCCGGCAACAATAACACACTCCTTTCCTTTGACGACGGTGACATCATCATGCTGCTAATCCAGGAGGACAAGGACGGATGGCTGTATGGAGAGCTGGAGAATACCCGGCAGCGGGGGTGGTTTCCCTCATCATACTGCCGACCTTACAATGAACCACTGATCTCAAACAGTTTGGGGACACCGGTGCGTTGTCTGAGTGTGGCCAGTCTTCcggaacaggaagaggaagagcctGTTCTGCTGCCGCCGCCAGACTACAGTGACGGGAAGGAGAGTCGCCCTGTCAGAATGGTCAGCTCCTCCACACACTCAGCCCAAAACACGATCTCTCTACCCAATGGGGTTGGAAAGGCTCCCTTTCTGGGAGGTGGGAATCCCTTTGCCACTGTCAAACTGAGACCTACAGTGACCAATGACAGATCAGCACCAATCGTCTGATAACAGGGATCATCCAGACAGAGGATTTATGAAGCTTGGAATCTCTGCGCCGCCAACACTTCAGAATCACAGTCCGACAAGATGTCCAGATAGCCTGGATTTTACTCTGCTTCAGAAAACCAGCTCCGTTGTTGCTAGGTCCGTTGCAACTGCATTGTAAAACAGACCAGTGAAGTGACAATAAATATGGGCAGTGCTGAGACAGACTAATATCCAGGCTACCTTCCTGACTCTTCAGCACTCAGATAcaaaaatgaataataataataatctgtctgtagtAGTTGTGGGAATGATGGGAGAGAGACACATGTTGGGAAAAGAAGAGCTCAATTATTGTTTACTTTTTCATTATTACGTGCCCATTTTTAAATGGGGAGACTATTTATGTAAACATATGAAACAAACTGAGTTTAAACAGTGAGAGTTTATGGAAGAATGAATATACCGACTAGGCACAGACATCCATCCGTTCAGTGTCTATTTTTGATTGACagttggttgagttgtcaactgatgtgaattcaatgtgaaatcaacaaaacattacaccatgtcattggatttaggttcaaagttggtTGAAAAAAAGACAAAATTCCCTTATATTGAAGACTTAACGCAAAATCCAATctgttttccatgttgattcaacttCATCACAAATATGTtctgttgttgaaatgacgtggaaacaaagtTGATTCAATCCATTTATGCCTAGCAGGTAGTAGTGTAAATTTTTTAATTCAAATAAGGGATTTTTGATTTGACATAGACTACTAAATGAATGTATTCTGAATGGGGAATGCATTGACATATGGACCCTGCCATGCTTTTTCTTCATACTTTTAAATGGTATTTTTTCATACTTGTTCAAAAGTTCATGATGTTTATACAATAATTGTAGGGTGGAAATTTCTCTTTGGCTTTTCATGGTAAGCTAAAGGTTGTGTGCATACAAATACACAATTGTTGCAAATCACAATCACATTGTTTTTGGTAGAAATACAGTATGAGCCATGCAGTATGTCAAAAGAGTCAACCGTTTTTTTAAAAATCTTCCTTCTGTGTAGAGTAATTCAtgatacacacaccacactgctGTCCATGCTAATTGATGATTACCATCCCAAATAAGTATTTGAAAAGAACACTGGACATGGTTCCTCCTCTTCTATCTCTGTTCAGATACTGATGTGTATTGTTTTCATTCTCTAAAGGTGAGAAGGAAAAGGATGTAACATGATGTTCTGTCCTTGTCCTCAAGTTTTGTAAATATATCATGGGCAAAATGGTtgtctgaaaaaaatatatatatttcttggCACCATGTAGACTAATGTAATGTTATCTCACAGTGAAACAGGATAAACCTTACATGGTCCTTATTAATGTATTGGCTTTGCAATATACTGCCATAGCCTACTGTGTATCTGTATGAAGACTTGCATAATAATTGAAAATGTTGTTCATCCCTTAATACACGAGATGAAATGGAGAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1916424 lncRNA upstream 86327 23115161 ~ 23117436 (+) True G1675016
TU1916354 lncRNA upstream 187016 23016200 ~ 23016747 (+) True G1674951
TU1916349 lncRNA upstream 192854 23009744 ~ 23010909 (+) True G1674946
TU1916342 lncRNA upstream 198071 23001585 ~ 23005692 (+) True G1674940
TU1916313 lncRNA upstream 234188 22969140 ~ 22969575 (+) True G1674912
TU1916539 lncRNA downstream 6038 23258199 ~ 23258497 (+) True LOC110499192
TU1916608 lncRNA downstream 165974 23418135 ~ 23418386 (+) True G1675189
TU1916610 lncRNA downstream 169225 23421386 ~ 23421612 (+) True G1675191
TU1916614 lncRNA downstream 185184 23437345 ~ 23443412 (+) True G1675195
TU1916630 lncRNA downstream 207171 23459332 ~ 23463060 (+) False G1675209
XM_021576142.2 mRNA upstream 264848 22918884 ~ 22938915 (+) False LOC110499185
XM_021576143.2 mRNA upstream 264848 22918884 ~ 22938915 (+) True LOC110499185
XM_021576144.2 mRNA upstream 270997 22918884 ~ 22932766 (+) False LOC110499185
XM_021576145.2 mRNA upstream 270997 22918884 ~ 22932766 (+) False LOC110499185
XM_021576147.2 mRNA upstream 287118 22914145 ~ 22916645 (+) True LOC110499186
XM_036956022.1 mRNA downstream 639 23252800 ~ 23269058 (+) False LOC110499192
XR_005037966.1 mRNA downstream 639 23252800 ~ 23269058 (+) False LOC110499192
XR_005037967.1 mRNA downstream 639 23252800 ~ 23269058 (+) False LOC110499192
XR_005037968.1 mRNA downstream 639 23252800 ~ 23269058 (+) False LOC110499192
XR_005037969.1 mRNA downstream 639 23252800 ~ 23269058 (+) False LOC110499192
TU1915004 other upstream 1244136 21936642 ~ 21959627 (+) True LOC110513322
TU1914567 other upstream 1357897 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 1389937 21813245 ~ 21813826 (+) False tnrc6b
TU1914368 other upstream 1753417 21444883 ~ 21450346 (+) False G1673231
TU1916535 other downstream 4643 23256804 ~ 23258069 (+) False LOC110499192
TU1916709 other downstream 327869 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 327976 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 327976 23580137 ~ 23581432 (+) False faap100
TU1916714 other downstream 327976 23580137 ~ 23581387 (+) True faap100

Expression Profile