RNA id: XM_036956025.1


Basic Information

Item Value
RNA id XM_036956025.1
length 3149
RNA type mRNA
GC content 0.42
exon number 16
gene id ccz1
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 23316868 ~ 23332111 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCAGTTTTTACTGTAACACATGAGATGCTGTCAAAGCAGGAAGTGTGCGCGGATTTTGTCATTGATCGCGGCTTTTCTACTGTATCTGTTTACTAATGTTAACAACAAACGAGATTATCTGCATGTGCTGACTTTATACAGTAAAAGTCACAGATAGTTGATCAGCATCTTCCTCTGTTGCAGTCCGAGAATGGCTTCGGGAATGCAAGAGAAACAGTACACCCCATCTCTTCTCAGCTTTTTCGTCTATAATCCTTCATTTGGGTCACGAGAGGGAGAGGAGGAGAAGAAGATTTTATTCTACCATCCCAGTGAGGTCGAGAAGAATGAGAAGATCCGTAATGTCGGTCTTTGTGAGGCCATTGTACAGTTTACCAGAACCTTCTGTCCAACAAAGCCTGCTAAATCCCTACACACACAGAAGAACAGGCAGTTCTTCTTTGAAGCAGAGGACAGTTTCTGGATCGTTATGGTGGTGCGGAACCCGATGGTAGAAAAACCTAATAAAGATGGGAGACCTCCCACAATAGAATATCAGGAAGAGGAAATACTTGACACAGTTTATGGTGCAGTATTACGGGAATGCTACAGTATGTACAAGCTCTTCAACGGCACATTTGGCAGAGCAATGGAAGCAGGCGGGGTGGAGCTGCTCATGCAGAAGCTTGACAAGTTCTTTTACAGGTACCTGCAGACGCTGCACCTGCAGTCCTGTGACCTGCTGGACGTGTTCGGTGGGATTGCCTTTTTCCCCCTGGACAAGATGACCTACCTGAAGATCCAGTCATTCgtaaacagagtggaggagagcctCAGCCTGATCAAATACACAGCCTTCCTCTACAACGACCAGCTGATATGGAGTGGTCTGGAGCAGGATGATATGCGGATCCTGTACAAGTACCTGACGACGTCACTGTTCCCCAGACACTCTGAACCagagctGGCTGGTAGGGACTCTCCCTTAAGGCCAGAGGTGGCAGGGAATCTGCTTCACTATGGGAGGTTTTTGACAGGACCTGCTAACCTCAAAGACCCAGAGGCCAAATTCCGGTTCCCTAGAATATTTGTCAACACAGAGGACAGTTATGAGGAGCTGCATCTGATTGTTTATAAGGCGATGAGTGCAGCGGTTTGTTTTATGATCAGTGCATCTGTGGAGCTGACGAGGGAGTTCTGTGAGCAGCTGGATGGTCTGGTGGGACCTCAGCTCACCCTGCTGGCCTCCGACATATGTGAACAATACAATGTCAACCGCAGGATATCAGGGCCGGACAAGGAGCCCCAGTTCAAGTTCATCTACTTCAACCACATGAACCTGGCAGAGAAGAGCACCATCCACATGAGGAAGACAGCCAGCGTCTCTCTGACCTCGGTCCACCCAGACCTCATGAAGATTCTGGGAGACATCAACTGTGACTTCGCCAGGGTTGATGAAGATGAAGAGATCATTGTGAAGGCTATGACAGACTACTGGGTGGTCGGCAAGAAGTCGGACCAGAGAGAACTCTACGTTATCTTGAACCAGAAGAATGCCAATTTGATTGAAGTTAATGAGGAAGTGAAGAGGCTCTGTGCGACACAGTTCAACAACATTTTCTTCTTGGACTGAAAGAAATAAAGGAAAGAACTGCacgaagaagagggagagaaagagagacggtgagagGGCAATGGACTGTTTCACCACACTAAAACTGTCAGCATTGCAGGGTGTTATGACAGCATCAGTGTAATGCAATAATTGCATAGATTAGGTAAGAGTTCGACCAAAACCATGGAAACGCCACACACCCGTCCCCCCATGGGGGATAGGTCCAGAATCTATTTAGTAACCACACTGTAGGCCTGttagaacacatacagtgcctagtgaaagttACACAACACTTGCACAGTCTTCATATTTTTCTGCCTTAAcattaaattaaatttaaaaaaaattagaaTTTTGGGGTTTCCTACAGATcgacacaacctactccacatgATCTAGGTGAAGGAAAGTTATAGAACATGTTCCAAATTAATGAGAAGTTAGAGGAAGACCTAATCCTGAGATAGAGTTGTATTTTTCTGCGGGACAGTTGCACACATTTtaatgccaaagacacaacagAATGGCGTTCTAaggtgttgagtgttcctgaaTGGTCCAGTCTCCTTCCTGACTTAATCTGCTTTAAAAATCTgagacaaggtttgaatattgcGGTCCATCAATGATTCCTAAACAAATgtactgagcttgagcaattttgacagAAACAATAGATATACattgccctaagagttgtgcaagGTTGGTAGAGTcttattcacagctgtaatggctgccaaaggtgcttccactaagtattaactctggggtgtgaagacataaGCATTCAATACATCCGCATTTTGTATTTCTTAGAACATTTTCCAAATGACTAtcatttttctttcactttgaaaatgtgtaGTTAGGTTGCGTAGATCGATatgaaaaaataatttaatcccCTTTTAGATTTAATTAaggcaaaatgtgaagactgcaaagggtgtgtagactttcactagcgaCTGCTGTCAATTGTGATTGATTTGACAAATATCAACTTTTTTTGTATCAGCTTTTCTGAATGGACGCCATTGACAGTGTCCTTGTGCTATCCTCTACGGGTGCGTGGCCATCGGCGCTCCATTGATCTCTTACCGTATGTATTGTAAACAATTAAATAAAGAAGCTTTTCACATGTAATTTCTTTCGATTTTTATTTAACCAATACAAAATGGTATTTTCATTTTTGTAATTAAGTGTCAAATGATCAGAGTAATTTTACTGTACATGTACTTAATTTGTCTATTTCTTTGTATATAAAGTGCATTGTCTTATTGTTTAAGTTCCTGTCAGCTGTTTGTATTACAATTGACATCATTGGTCTACTGACTCTACTCGTTGTTGTTATTTTtaaggacacaacatgacatgtATCACTATATTAATTTAAAAACAGACATGCACAAACATGCTGTTTTCCTTCTATGGGTTCTGTTCATTGTCTAGTATAATTTTGAAATGAGATGCTATGATTCATGTCGAAAGTAATGTGGTTTGTAAAATGCAGCCCCAACTTTAAATAAATGAAGAAATTCTAATTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1916539 lncRNA upstream 58380 23258199 ~ 23258497 (+) True LOC110499192
TU1916424 lncRNA upstream 199441 23115161 ~ 23117436 (+) True G1675016
TU1916354 lncRNA upstream 300130 23016200 ~ 23016747 (+) True G1674951
TU1916349 lncRNA upstream 305968 23009744 ~ 23010909 (+) True G1674946
TU1916342 lncRNA upstream 311185 23001585 ~ 23005692 (+) True G1674940
TU1916608 lncRNA downstream 86024 23418135 ~ 23418386 (+) True G1675189
TU1916610 lncRNA downstream 89275 23421386 ~ 23421612 (+) True G1675191
TU1916614 lncRNA downstream 105234 23437345 ~ 23443412 (+) True G1675195
TU1916630 lncRNA downstream 127221 23459332 ~ 23463060 (+) False G1675209
TU1916633 lncRNA downstream 127221 23459332 ~ 23461445 (+) False G1675209
XM_021576167.2 mRNA upstream 2888 23308948 ~ 23313989 (+) False pvalb9
XM_021576169.2 mRNA upstream 2888 23309273 ~ 23313989 (+) True pvalb9
XM_021575354.2 mRNA upstream 12896 23301693 ~ 23303981 (+) False pvalb2
NM_001195411.1 mRNA upstream 13273 23302580 ~ 23303604 (+) True pvalb2
XM_021576165.2 mRNA upstream 19346 23294737 ~ 23297531 (+) True LOC110499195
XM_036956026.1 mRNA downstream 1310 23333421 ~ 23350557 (+) False dlgap5
XM_036956027.1 mRNA downstream 1310 23333421 ~ 23350557 (+) True dlgap5
XM_036955546.1 mRNA downstream 35882 23367993 ~ 23376296 (+) True eif2ak1
XM_036956032.1 mRNA downstream 37015 23369126 ~ 23395711 (+) True LOC118936387
XM_036956028.1 mRNA downstream 63926 23396037 ~ 23430183 (+) False LOC110499199
TU1916535 other upstream 58808 23256804 ~ 23258069 (+) False LOC110499192
TU1915004 other upstream 1357250 21936642 ~ 21959627 (+) True LOC110513322
TU1914567 other upstream 1471011 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 1503051 21813245 ~ 21813826 (+) False tnrc6b
TU1914369 other upstream 1866531 21444883 ~ 21450346 (+) True G1673231
TU1916709 other downstream 247919 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 248026 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 248026 23580137 ~ 23581432 (+) False faap100
TU1916714 other downstream 248026 23580137 ~ 23581387 (+) True faap100
TU1919058 other downstream 1750553 25082664 ~ 25083277 (+) True G1677419

Expression Profile