RNA id: XM_036956032.1


Basic Information

Item Value
RNA id XM_036956032.1
length 1672
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC118936387
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 23369126 ~ 23395711 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTGTCAAATGTTATTGAATACAGACACCCAGAGCCTTACGTTAAGACCAAAAGAGGGTCTGTTCCAGGCACAGACGTCTCGCTACCTCTGTGAGTTTGAAGAGCTCTCTATACTTGGAAAAGGATCCTATGGCAAAGTCTTCAAGGTTAAAAACAAGCTGGATGGACAGAAGTATGCTGTGAAGAAAATTCTCATCAACAATGTTTCAAGGGAAGACTACATGAAGGTTCTCAGAGGTGAAAGTGTTATCCAGTCTTGAGCACATCAATGTAGTAGGCTACCACACTGCCTGGATGGAGCATATCACACATGCTTTTACTAagcCTGCATCAATACTCTCTGCACTGGAAATGCATGTGCTGCCAGAACGCAGTGAGGAGAGTACAGAGTAGCAGCGGCTCCTCAAAAGTCTTCACGAGCCCAGATCAGTCAAAGGAGCCAGTGGCCATAGCTAAAGCACCAGTGAGCCTCCCAGTGAAAGAGGAGAAGAGCACGCAGGTGGTGGGTCCTAAAACCATGCGCCACGCCCGTTTCCCAGATGACCGTTTCCCAGATGACCATTTCCCCAATGTGTTGCTGGGACAGTGTGGCCAGACGAGGGACGGCTGCACTGGTGTCAGCTGGGATAGCTCGGCCCTGTCGGAGGATGACTTAGGAACCAGAAATGGGATAGATCTGAAAAACCACTCCTACATTGACATGGGGAGCGAGCAGTGGGACACGAAATTCCCCGCCAAGGAGGTGCAGTTCCATTTCATGCTATATATCCAGATGCAGCTATGTGAACGCTCGCTCAAAGACTGGATTTTAGAGAGAACCaacaaacacacatcacaaaATCCTTATGGGGCTGTGGACACGAAACAAACCCTCAGCATTCTACATAAAATACTTAAAGGTGTAGAGTACATTCACTCTAGAGGAATCATGCATAGAGACCTGAAGCCCAGGAATATTTTCCTGCGTGGACATAACTACCATGTGAGCATTGGAGACTTTGGACTGGCTTGCAGGGATAAAATGATGGATGACAAGGAAAAACCACCCTCCACCTCACAGAACACTGGTTCCTCTCACACCGCTGGAGTGGGGACATTTGTTTACGCAGCACCTGAACAACTGGAGGGTTCCCACTATGATTCAAATTCAGACATGTACAGTATAGGAGTGGTGGCCCAGGAGCTGTTCCAGCCCTTTGGGACAGAGATGGAGCGTGTTGAGACACTAGGGGACCTCCGTGAGGGGAAGGTCCCAGACTCCTTCTCCCAGCACTGGCCTGTCCTGGCCAAGTACATCACACTGCTGACCAGCAGAGACCCCGCTCTAAGACCCAGCGCCACACAGCTGCTGCAGAGCGAGCTGTTCAGCAGCAAAGACATGGTTATCCATGGCTTGCAGACAAGGGTTAAAGAGCAGGAATATGAGATAGTTCAACTCAGGAGACAGATCAGTCAGCTACAAACTCAGAGCATGTAGCAAGCATCCCATTCCACGGACAGGACCTGACGTCAACCATCTCTGCCCTTCTTCAAACCTGTTATATTCGACCCCTTTACCTTGCAAATGGTTGAATGTGTGTGGTCTCTCTGCCTGGATGTAACAATGTGACTATAAGTTAAAATTGTAGAATAAATCATTTAATTTACACTTATCTGAGAGTCTGCAGACAT

Function

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1916539 lncRNA upstream 110629 23258199 ~ 23258497 (+) True LOC110499192
TU1916424 lncRNA upstream 251690 23115161 ~ 23117436 (+) True G1675016
TU1916354 lncRNA upstream 352379 23016200 ~ 23016747 (+) True G1674951
TU1916349 lncRNA upstream 358217 23009744 ~ 23010909 (+) True G1674946
TU1916342 lncRNA upstream 363434 23001585 ~ 23005692 (+) True G1674940
TU1916608 lncRNA downstream 22424 23418135 ~ 23418386 (+) True G1675189
TU1916610 lncRNA downstream 25675 23421386 ~ 23421612 (+) True G1675191
TU1916614 lncRNA downstream 41634 23437345 ~ 23443412 (+) True G1675195
TU1916630 lncRNA downstream 63621 23459332 ~ 23463060 (+) False G1675209
TU1916633 lncRNA downstream 63621 23459332 ~ 23461445 (+) False G1675209
XM_036956026.1 mRNA upstream 18569 23333421 ~ 23350557 (+) False dlgap5
XM_036956027.1 mRNA upstream 18569 23333421 ~ 23350557 (+) True dlgap5
XM_036956024.1 mRNA upstream 37015 23316868 ~ 23332111 (+) False ccz1
XM_036956025.1 mRNA upstream 37015 23316877 ~ 23332111 (+) True ccz1
XM_021576169.2 mRNA upstream 55137 23309273 ~ 23313989 (+) True pvalb9
XM_036956028.1 mRNA downstream 326 23396037 ~ 23430183 (+) False LOC110499199
XM_021576173.2 mRNA downstream 327 23396038 ~ 23430183 (+) True LOC110499199
XM_036955530.1 mRNA downstream 97885 23493596 ~ 23502655 (+) False rac1
NM_001160673.1 mRNA downstream 97954 23493665 ~ 23501495 (+) True rac1
XM_021576199.2 mRNA downstream 113921 23509632 ~ 23518623 (+) True LOC110499211
TU1916535 other upstream 111057 23256804 ~ 23258069 (+) False LOC110499192
TU1915004 other upstream 1409499 21936642 ~ 21959627 (+) True LOC110513322
TU1914567 other upstream 1523260 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 1555300 21813245 ~ 21813826 (+) False tnrc6b
TU1914369 other upstream 1918780 21444883 ~ 21450346 (+) True G1673231
TU1916709 other downstream 184319 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 184426 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 184426 23580137 ~ 23581432 (+) False faap100
TU1916714 other downstream 184426 23580137 ~ 23581387 (+) True faap100
TU1919058 other downstream 1686953 25082664 ~ 25083277 (+) True G1677419

Expression Profile