RNA id: XM_036956028.1


Basic Information

Item Value
RNA id XM_036956028.1
length 5857
RNA type mRNA
GC content 0.49
exon number 17
gene id LOC110499199
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 23396037 ~ 23430183 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAAAGGTCAGACGTGTACGTGCTTTCTACGACTCATATGAACACGTTCCACACGGAGCCTAAGCGAATCAAGAGTTGCCTTTCTTCGGTAGTACCCGGATTTGCCCGTGGGGAAAATAGCTACGTCATTGTTCACCGACGGACTACCCCGCTTGAAATAAGAAATGGACCTACACGAATAATACATTTGTGAAAAATTACAGATCTGAAAGATGTTCCTTTATGCTTCCAAAACCATACCGCAAGCGAAGCGCTGCATGTTGAGACAATGAACAATGACCATAGTTGACAGATCTTCAGAGAAATCTGACCACGAGTCAGTCGGGTGCAAGCGCTCCGGATCGCTGACCTTCCCCGGCGGCGACGGGAACGGGATGGACGGCGGGTGCTCCAGCTGGGGGGCGGGGGGTCCCTCATCCTCCGACACCCCCAGGGTGAAGACCGGGGGCTGCATGGGCCCAACCCCTGGAGCCACTGTCTACAGCAGCAGTGCTGCCATCACCGCAGACAGGCCCAAGGAGCAAGTGGTGCTGACCAGTGGGGACGGCATCGCCTTGCCCCAGAAGGTGCTGTTCCCGGCCGAGCGGCTCAGCCTGAAGTGGAACCAGGTCAACCGCATCGGATCAGGTCTCCAGAACCTGGGCAATACCTGCTTCCTCAACTCGGCTCTGCAGTGTCTCACCTACACTGCTCCCCTCAGTAACTACATGCTGTCCCGGGAGCACTCTAAAACGTGTCACGAGCCTGGATTCTGTATGATGTGCACCATGCAGAATCACATCACCCAGGTCTTTGCCAACTCTGGGAACGTCATCAAGCCCATCGGAGTCCTCAATGAGCTCAAACGGATTGCAAAGCATTTCCGTTTTGGTAGCCAAGAGGACGCCCATGAGTTCCTGCGGTACACAGTGGATGCTATGCAAAAGTCCTGCCTGCCCGGAAGCAAATTGGACAGGCAAACACAGGCAACCAGTTTCATCCATCAAGTCTTTGGAGGGTATCTAAGGTCCAGAGtgaaatgtttaaaCTGCAAAGCAGTCTCTGACACGTTTGACCCTTATTTGGATGTCGCTTTGGAAATAAAGACTGCTCCCAGTATCACCAAAGCACTGGAGCAGTTTGTTAAGCCTGAGCAGCTAGATGGAGAGAATGCCTACAAATGCACTAAGTGTAAGAAGATGGTTCCAGCCTCTAAGAGATTCACCATCCACCGCAGCTCCAATGTGCTCACCATCTCACTGAAGCGCTTCGCCAACTACAACGGGGGCAAGATCGCTAAGGACGTGAGGTATCCTGAGTGCCTGGACCTGCGTCCCTTCATGTCTCAGTCCCACGGGGAGCCCCAGGTCTATGTGCTCTACGCTGTCCTGGTGCACTCTGGCTTCAGCTGCCACGCTggacactactactgctacgtCAAGGCTAGCAACGGCCAGTGGCACCAGATGAATGACTCCTCTGTATCAGTCAGTGACATCAGATCAGTCCTCAACCAGCAGGCGTACGTCCTCTTCTATATCAGGTCACCTGATCTGAAGAACGGAGGGGACTACAACCACATGAGTCGGCCCCCTGGACAATCGTCCCCCCGCCCCATCCTCACACCCCGGGTCAACATTGGACCACGACACACCAACACTTGCTTCATAGGACCACAGCTGCCCCCACACATGGCCAAGAACACCTTTCACATCAATGGGAATGGCTCCCTAAGGGACTTCCCCTCTGGCTCAAAGCCCAGCAGTGGGAGCAGCAGCATGGGCAAGACTAGCTACGGCctgctctcctcttcttcctcttcctctcattcTCTAAGCTGTCCTACAGGTATCCCTGACACTGCCAAGCGTCAGAAGCTCTCCTTCTTCATCGGTCAGGGCAAACAGATCCGcccctcctcatcatcctcctcttACGCCCAGCCGTCCTCCTGTTCTTCGTCACAGACTACCTCAGACATGTCCGCGCCCCAGGCTCCTTGCATAAACGGTACACCCTCCGTTAACGGAAACGGTCATGGAGCCTCATTCCTGGTGCCGTATGGCCAGGAGTCATCGGAGGAGTCTGACCAGGAGGGAGGCAGCGGTTTGGAGAACGGCACAACCAAGCCTCACGTTAacgggaggaagggaggggcCGTCTATGGCCCCGTCCCCAGAGTGCTGGCCCTCAAGCCCAACGGCATCAGTAACGGCCAGGCCACCATGCACCATAACGGGTCTGGGACAAACGGCTCCTCCAAACTCAGCCAGATCGGACATCAGAATGGACACCACAAAGTTAATGGCATCAAACAACCGGAGAAGGTCAACGGTCATGTACTGTCTCCTGGGTTGGGTCCCAGCAGTTCTAATGAGGCGGAGTCTCACCACAGTGGCCCAAGCAAAGAGGTGTATAGTGCCATCCCCAGCCAGGACAACCCGTCTCAGAGCCTCCACAGTGCCGACAGCGATAGCCACCTCTCCCCAACCCCAGAGAAAAGGACTAAAACTCACTCTGACCCCCTCCCTCACCACCCACCATCAACCACTGCTAACCCGCCATCCTCATTGGCCGATGTTGGCGCTAAGCCACCTACTGACACCATGAGGGAATCCAGCTCCACCTCCAACCCTGGGGCCTTACCCCTCCAGCCCACCCCCCACTCCCTCAGAACCCTAGTCTCTCCAGCCTTCTCCCAGCCCCTCTCTGGACCAGGCCAGGGGACCACAAAAGGCCTCGGAGCACCACACAGCAGATCTGGGGAGGACGTCAGGGAGACTGAGAACAGCCCAGCAGCAGGGCTGGATGGACGGCTGGACGGCAAGCCCAGctccagagagggaagagaccgGATGTATTCTTCTGATCGGGATAAGGGGAGAGACCGACTATATTCTTCGGACCGCGATAGGGATGGAGACCGGCTGTACTCTTCTGACCGGGATAAAGACGGAGAAAGGAATGGGTACCACCGTGACATGAGCCGTGAACGCAACTGGGACCGTGACTCAGACCGCTATCGACACCGGCGGGACCACAGAGATCGAGAACACCACCGAGACCGAGAACACCACCGGTCGTACCGTGATCGCTCGGCCAGCCGGGACAGACACTGGGAGTCAGAGCGTCGCTGGGAGAGGAACGCCTACCACCCCAGGGACAGGGACCGctgccaccaccactaccacagacccagagagaacagggagagggacCGGAGGGAGCACAGCCTCCCCCATAGAGAGGAGCCTCACGGACGCTccaggtggaggggggagaggtgtgaAGGTAAGGACAGGGGTGATGGTAAGAGGGGTTACTACCCTTCACAGGAGGAGACCCCCCTGCCCACCCCACTAAGCTCCAACACCAAACCCAGTCAGCCCCCCACTAGCCCAGACCTCTCCCCAGCCAGACCAGCTCTGGAGAAACGACCCGATCCTCTGAGAGAGGACAGCGTTGAGGAGCgtcgggccaagaaacacaagaagagcaagaagaagaagaagtccaAGGACAAAGCTAGGCGTCGAGAGAATGGGACCTCTGATGTGGATTCCTCTGACAGGGCTGCCGATGGCAGCAGGTCCTCCAaacacaagaagaagaagaagaggaggcaCGACACTGACATGGAGGACGAGAAGTCCCGCTCTACCCAGAGTTCCGAGGGGCACCGTGACCCCAACGCCCCCCGGGAGAGTCGCAGGGCGAGCAGCAGTGACGAGGAGAGGGCGAGCAGGAAGCGACGTTACCAGGACGATGATGGCTCTGACAATAGCTACCCCGAGGTCTGTATGCAAACGTAACACATCTCTCTCCCATTGCAGACTTGGAATACTGTAAAAATCAACCTTTATGGAAAAGTGAAATGCAACAGGAATGTCATCCCTAATATTTGAACGTGGTGCTGAATTACTgggaatatactgtatttttacCACACAAATGTTTTAAAGATTctaccagatttttttttttttttaaggtatttttttttctaattcaTTCGGTAGACACTTGTCACTCAATGGACATTTATGAAAAATAATTAATATATACACGTTGTAAACAAAAAAGAAGCCTGGAGCTTAACCATCTCAACTGCTGCTTAGTGGAAGACTCAGGATTTGTTAAAATGAGACTTTTTCCTCCTCAGAGAACTGACCACTTGGTTAAATAATCGAACGACTATTGTTGTTGCCTAGGAGATGACCTGTTTGATATGACTTCAGTTGGCCGCAAGTTTGTCACCATTATCCACATATCTGTATAGCTGGAGttgttggtaaaaaaaaaaagatgaaaaGAAAATGGAGGGAAACGTTATGGAGGAGTGAGGACCGTGTGGTAGACACAAGGACATTGCCAGCTCTTTGTTGCTTTCAATTACTTTTTAAAATTCTCTTAAGCCTACAATTCTTTCTCTCAACACGTCACTGGAGAAGATTCCTTCCCTCTGCATCCCTCTCTTCACTCGCTTTCACTGAGATATCATTTCTATCCTTAACTCATTCAAGGATTTAAAAAATCATAATAATCATGTTATCTTATGGCTGTGgacctgtttttttgtttttttatagcGTCCAAAAGAATACTGTGAATTTAATTTTGAACTGTACTATcagttatttttttatacattaaaACGGTCCTGTATCAGGAATACCAATGTAGAATTTCTTTTTTTGTTTTAGAATTCCCACAACATAATTTAGACTGTGTTCTATGGACATAAGTCAGTAGAATGGTATGATGATCTGCTTTTGGTCTGTTTGGATGGCTTTGTTTTCTACCTAAAAAAAGACCAAAACATGTAAATGGTTGTTAATACATTTCTAGTTCTACAATAGCATGTCAAATTTATACATTGTACAAGGTATATAAAACGCCTTAATACATTtaatgtcattattattattttttgaatgAATGCTGTTGATTGATTGGGGAAGTACACACAGATGGTGAAAAGTTTCTTCCATTTTATTGGAAGGAGTAATTTGTCTGACTTTTGGTAAAAAAAGATTGCATATGAGTGATTGTTTAATTGGTTGCTTGGATAGACTGAAACACTTTGGATTTAGGGCTAACAGTGGTTAGGTAATTTTTCATATTGTTTCCAGGTTACACAATGATAGTGTGGGAGTTCAAAACAGGACCTGTGAACCTTGTATGTGGACCTGTATTGTCCACATACAATAGACTGTGTGGAAGCTATAACCTAAAGAATAGGTGGCTGGGTAGGTATCAGACTGGTCAGTTACACAGGAGAAGATCTGGTATTTTTACTCAAAATTCTCATAACATTAAGGCTGCTGTAACATTTTGAGATTCTCTTGAGCTTTTACACAACTTTTGTAAAGTTCCATCTCTGTCTCACAACGGGGCGATTTAGATCCAAACCTGATCTATTCAATCTTTTTCGCTGAAGTGTTACACTTGGCGCTCTATAAATTGaggtaatttccaattgagctgacatatgcagcgtttaccgtgaacgcAGTCTCTGCTAACGCGGGAACATTGAAATGTAATGGCAATCACGCTGTCTTCTACGATACAGAGTGAATAGAGCCATTAGTTTTCACCTTCCAATGTAAAAACCAGCTGGCTTGGCTGCTACATTTCTGTTTCTTTTAGAAATATGAGGaattgtttttcttcattttctCTGTGGAGTTGGAGTTGAGGGTTTCTTCCACTGCAGTATGTAATCTGTAATGCTCATTGCTCAACTTTGAAATGTGAACAAACGGGTGTAGGCTAGCCATAACCTTTTACATGCTACAGAAACAaactatgtacagtacatatgtcAAGGGGAATACACTTTTGTAATTAGagaaaataaatatgaaaaaCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1916539 lncRNA upstream 137540 23258199 ~ 23258497 (+) True LOC110499192
TU1916424 lncRNA upstream 278601 23115161 ~ 23117436 (+) True G1675016
TU1916354 lncRNA upstream 379290 23016200 ~ 23016747 (+) True G1674951
TU1916349 lncRNA upstream 385128 23009744 ~ 23010909 (+) True G1674946
TU1916342 lncRNA upstream 390345 23001585 ~ 23005692 (+) True G1674940
TU1916614 lncRNA downstream 7162 23437345 ~ 23443412 (+) True G1675195
TU1916630 lncRNA downstream 29149 23459332 ~ 23463060 (+) False G1675209
TU1916633 lncRNA downstream 29149 23459332 ~ 23461445 (+) False G1675209
TU1916634 lncRNA downstream 29149 23459332 ~ 23465663 (+) True G1675209
TU1916712 lncRNA downstream 149954 23580137 ~ 23582539 (+) False faap100
XM_036956032.1 mRNA upstream 326 23369126 ~ 23395711 (+) True LOC118936387
XM_036955546.1 mRNA upstream 19741 23367993 ~ 23376296 (+) True eif2ak1
XM_036956026.1 mRNA upstream 45480 23333421 ~ 23350557 (+) False dlgap5
XM_036956027.1 mRNA upstream 45480 23333421 ~ 23350557 (+) True dlgap5
XM_036956024.1 mRNA upstream 63926 23316868 ~ 23332111 (+) False ccz1
XM_036955530.1 mRNA downstream 63413 23493596 ~ 23502655 (+) False rac1
NM_001160673.1 mRNA downstream 63482 23493665 ~ 23501495 (+) True rac1
XM_021576199.2 mRNA downstream 79449 23509632 ~ 23518623 (+) True LOC110499211
XM_021576211.2 mRNA downstream 104733 23534916 ~ 23544723 (+) False LOC110499219
XM_021576212.2 mRNA downstream 104733 23534916 ~ 23544723 (+) True LOC110499219
TU1916535 other upstream 137968 23256804 ~ 23258069 (+) False LOC110499192
TU1915004 other upstream 1436410 21936642 ~ 21959627 (+) True LOC110513322
TU1914567 other upstream 1550171 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 1582211 21813245 ~ 21813826 (+) False tnrc6b
TU1914369 other upstream 1945691 21444883 ~ 21450346 (+) True G1673231
TU1916709 other downstream 149847 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 149954 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 149954 23580137 ~ 23581432 (+) False faap100
TU1916714 other downstream 149954 23580137 ~ 23581387 (+) True faap100
TU1919058 other downstream 1652481 25082664 ~ 25083277 (+) True G1677419

Expression Profile