RNA id: NM_001160673.1


Basic Information

Item Value
RNA id NM_001160673.1
length 1277
RNA type mRNA
GC content 0.44
exon number 7
gene id rac1
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 23493596 ~ 23502655 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCACCAGAGATTTTTTGGGTGGTGGCTGCTTGTTTTACAAGTTTAGAATTCCACCAAGTTATTGTTGAGGACACTGATTTGAAGGAATTATACTAATTTCCAAACTATCGTAACTTGGGCCCTCTAATCGAGGCTTCAAACCTTGTTTTTCCCCGTTGGGGCAACTAACGAGTGGTTAACCGATCAGCTCAAATTTTATCTAGCTAGCTGAGAGAGGCGTCAGATGCAGGCCATCAAGTGTGTTGTAGTGGGGGACGGAGCTGTGGGTAAAACATGCCTGCTCATCAGCTACACCACCAACGCGTTCCCCGGGGAATACATCCCCACAGTCTTTGACAACTACTCTGCCAATGTGATGGTAGATGGGAAACCAGTGAATCTGGGTCTATGGGATACAGCAGGACAGGAAGACTACGACAGACTCAGACCACTGTCCTATCCACAGACGGATGTGTTTttgatctgtttctctctcgtgAGTCCTGCCTCCTTTGAAAACGTCCGTGCCAAGTGGTACCCAGAGGTGAGACACCAAGCTGGATCTGAGAGATGACAAGGACACCATCGAGAAGCTGAAGGAGAAGAAACTCACCCCCATCACCTACCCCCAGGGTCTGGCCATGGCAAAAGAGATTGGAGCAGTAAAGTACCTGGAATGCTCAGCCTTGACACAGCGTGGCCTTAAGACAGTGTTTGACGAAGCCATCCGGGCGGTCTTGTGTCCCCCGCCCGtcaagaagaggaagagaaagtgTTCACTACTCTAAACGCCGCAGACAGGAAGTAGGAAGTCACACTGCAGTCTGAGCTCACCTACTGGTTggggggaggaagaagagggtgAGGGAGTGTCTTAAGAGGGAAGATTCTACAGatgtcattttttttctctcttggaTTGTAATTAGTACATAGTACTTAAATATGATTTTTATTATACAAATCCTAGAATTAGAGCTTTGTGAAATTCCTGCTGCCTTCTAAAAATAATAACTTTTTTTTAATGTTCTTGGACGATACTAATTGTTCTTTTCAATTTCAGTCTCTTTCCACTCTTCTCGAGTCCATATTGTTTGTTTACAGACTTCAATTGTGTAGAATTGAGGTGTTGCCAAAATTCCTACCGCATATAACGGTCATCACTTTCTTGTAGCTCCATGTACActaaatgtaatgatttcttCTTGTTTTTTCTTTTGTACCATATGTGCGACCATAATTAGCAAAATCTTAAAATATCCTTTAAATGGTTCAAGAGAAATTGAAGTAAActctt

Function

GO:

id name namespace
GO:0060071 Wnt signaling pathway, planar cell polarity pathway biological_process
GO:0072659 protein localization to plasma membrane biological_process
GO:0042074 cell migration involved in gastrulation biological_process
GO:0043552 positive regulation of phosphatidylinositol 3-kinase activity biological_process
GO:0045087 innate immune response biological_process
GO:0071542 dopaminergic neuron differentiation biological_process
GO:0021799 cerebral cortex radially oriented cell migration biological_process
GO:0045453 bone resorption biological_process
GO:0045740 positive regulation of DNA replication biological_process
GO:0034446 substrate adhesion-dependent cell spreading biological_process
GO:0003382 epithelial cell morphogenesis biological_process
GO:0002551 mast cell chemotaxis biological_process
GO:0021831 embryonic olfactory bulb interneuron precursor migration biological_process
GO:0007520 myoblast fusion biological_process
GO:0006954 inflammatory response biological_process
GO:0030168 platelet activation biological_process
GO:0031295 T cell costimulation biological_process
GO:0038095 Fc-epsilon receptor signaling pathway biological_process
GO:0038096 Fc-gamma receptor signaling pathway involved in phagocytosis biological_process
GO:0035025 positive regulation of Rho protein signal transduction biological_process
GO:0048532 anatomical structure arrangement biological_process
GO:0006972 hyperosmotic response biological_process
GO:0048813 dendrite morphogenesis biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0048261 negative regulation of receptor-mediated endocytosis biological_process
GO:0043652 engulfment of apoptotic cell biological_process
GO:0002093 auditory receptor cell morphogenesis biological_process
GO:0050690 regulation of defense response to virus by virus biological_process
GO:0090103 cochlea morphogenesis biological_process
GO:0045216 cell-cell junction organization biological_process
GO:0032707 negative regulation of interleukin-23 production biological_process
GO:0097178 ruffle assembly biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0097190 apoptotic signaling pathway biological_process
GO:0008283 cell population proliferation biological_process
GO:0048011 neurotrophin TRK receptor signaling pathway biological_process
GO:0030838 positive regulation of actin filament polymerization biological_process
GO:0016601 Rac protein signal transduction biological_process
GO:0060263 regulation of respiratory burst biological_process
GO:0007411 axon guidance biological_process
GO:0001934 positive regulation of protein phosphorylation biological_process
GO:0030334 regulation of cell migration biological_process
GO:0016032 viral process biological_process
GO:0010310 regulation of hydrogen peroxide metabolic process biological_process
GO:0007160 cell-matrix adhesion biological_process
GO:0010592 positive regulation of lamellipodium assembly biological_process
GO:0071526 semaphorin-plexin signaling pathway biological_process
GO:0051668 localization within membrane biological_process
GO:0032587 ruffle membrane cellular_component
GO:0005802 trans-Golgi network cellular_component
GO:0005829 cytosol cellular_component
GO:0042470 melanosome cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0019897 extrinsic component of plasma membrane cellular_component
GO:0001891 phagocytic cup cellular_component
GO:0030027 lamellipodium cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0030742 GTP-dependent protein binding molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0051022 Rho GDP-dissociation inhibitor binding molecular_function
GO:0031996 thioesterase binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1916634 lncRNA upstream 28002 23459332 ~ 23465663 (+) True G1675209
TU1916630 lncRNA upstream 30605 23459332 ~ 23463060 (+) False G1675209
TU1916633 lncRNA upstream 32220 23459332 ~ 23461445 (+) False G1675209
TU1916614 lncRNA upstream 50253 23437345 ~ 23443412 (+) True G1675195
TU1916610 lncRNA upstream 72053 23421386 ~ 23421612 (+) True G1675191
TU1916712 lncRNA downstream 78642 23580137 ~ 23582539 (+) False faap100
TU1916797 lncRNA downstream 181963 23683458 ~ 23683683 (+) True G1675345
TU1916798 lncRNA downstream 182235 23683730 ~ 23683992 (+) True G1675346
TU1916799 lncRNA downstream 183611 23685106 ~ 23685337 (+) True G1675347
TU1916800 lncRNA downstream 184159 23685654 ~ 23685859 (+) True G1675348
XM_036956028.1 mRNA upstream 63482 23396037 ~ 23430183 (+) False LOC110499199
XM_021576173.2 mRNA upstream 63482 23396038 ~ 23430183 (+) True LOC110499199
XM_036956032.1 mRNA upstream 97954 23369126 ~ 23395711 (+) True LOC118936387
XM_036955546.1 mRNA upstream 117369 23367993 ~ 23376296 (+) True eif2ak1
XM_036956027.1 mRNA upstream 143108 23333421 ~ 23350557 (+) True dlgap5
XM_021576199.2 mRNA downstream 8137 23509632 ~ 23518623 (+) True LOC110499211
XM_021576211.2 mRNA downstream 33421 23534916 ~ 23544723 (+) False LOC110499219
XM_021576212.2 mRNA downstream 33421 23534916 ~ 23544723 (+) True LOC110499219
XM_036956042.1 mRNA downstream 74934 23576429 ~ 23582556 (+) False faap100
XM_036956043.1 mRNA downstream 75071 23576566 ~ 23582556 (+) False faap100
TU1916535 other upstream 235596 23256804 ~ 23258069 (+) False LOC110499192
TU1915004 other upstream 1534038 21936642 ~ 21959627 (+) True LOC110513322
TU1914567 other upstream 1647799 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 1679839 21813245 ~ 21813826 (+) False tnrc6b
TU1914369 other upstream 2043319 21444883 ~ 21450346 (+) True G1673231
TU1916709 other downstream 78535 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 78642 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 78642 23580137 ~ 23581432 (+) False faap100
TU1916714 other downstream 78642 23580137 ~ 23581387 (+) True faap100
TU1919058 other downstream 1581169 25082664 ~ 25083277 (+) True G1677419

Expression Profile