RNA id: XM_021576199.2


Basic Information

Item Value
RNA id XM_021576199.2
length 1875
RNA type mRNA
GC content 0.50
exon number 14
gene id LOC110499211
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 23509632 ~ 23518623 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTGATGCATGTTGTGCATTTTCACAAAATGTGGACAATATTTGTAGAATCCTACTGGGTAGATAAAAAGTTGTTTAGCACATTTAAAAACAGTGGTGGTAAATACACTTGTTAGTGCACGTTTTTAAACCCCAGAAGAAGAAGTTGGTGCGCTAGGAATTCTGGGTACGACATTCCCGTGTCAGCCATATTGTTTCATCGTTCTGGTGTAAGGTTAAAGGGGAGATGAAGGGGATTCGCGGAATAAGTCAGTTATCGACAAGGCTTTACTCAGCCCAGGCTGCCCGTAAGTTGGATGTCGCTGCAGAGCATGTCAAGTTTCAGCCTCAGGATGTGCAGGTGACTAAACTGCCCAGCGGTCTGGTGATAGCCTCGTTGGACAACTACTCCCCGGCTTCCAGGATCGGTGTGTTTGTGAAAGCTGGCTGTCGATATGAGTCCCCGGACAACCAGGGGGTCACCCACCTGCTCCGTCTGGCAGCCAACCTGactaccaaaggtgcttcagcctTCAGGATCTGTCGTGGTGTGGAAGCTGTTGGAGGAAGTCTAGGCGTGACGTCATCCAGAGAGAACATGATCTACTCTGTTGACTGTCTCAGAGACCACATtgacacagtgatggagtacctGATCAATGTGACCACAGCACCAGAGTTCAGGCCGTGGGAGGTGTCTGACCTCACCTCCAGGGTCAAGATGGACAGGGCCCTGGCCGCACAGTCCCCCCAGATGGGTGTGATTGAGGGTCTACATGGAGCTGCTTACAAGAACACGCTGTCCAACTCCCTCTACTGCCCAGACTACATGGTTGGCCACGTCGACGCTGACCATATGCACAATTTTATCCAGAACAATTTCACAAGTGCAAGAATGGCTCTGGTTGGGCTTGGTGTGGACCATGATGTTCTGAAGCAGGTAGGAGAACAGTTCCTCAACATCCGCAGTGGGATGGGCACCGCTGGGACAAAGGCGCAGTACCGAGGCGgTGAGGTGAGGGTGCAGAATGGGTCCAGCCTGGTGCACTCTGCAGTGGTGTCTGAGGGGGCGGCGGTGGGCACAGATGAGGTCATGGCCTTCTCTGTACTTCAGCACGTCCTGGGGGCGGGGCCACACATCAAGAGAGGCTCCAATTCCACCTCCAAACTCATCCAGGGTGTTGCTAAGGCTACTGCAGACCCCTTCGATGCCTCTGCTTTCAATGTCAACTACTCTGACTCTGGCCTGTTTGGAGTCTACACCATCTCCCAGTCTGCAGCAGCTGGTGATGTGATCAAGGCAGCTATTGGCCAGGTGAAGGCTGTTGCAAGTGGGGTCTCAGAAGCTGACCTGACCCGCGCCAAGACCCAGCTAAAGGCTGAGTACCTGATGTCGTTGGAGAGCTCAGAGGGTTTGTTAGATGCCATGGGTTCACAGGCTCTGGCCAGAGGGGCCTACCACTCCCCCGAGGCCATCGCACAGAAGATCGACTCGGTCTCAGCAACTGATGTTGCCAATGCTGCAAATAAGTTTGTGTCGGGCAAGAAGTCCATGGCTTCAAGTGGAAACCTCGTCAAGACGCCCTTCGTAGACGAGATCTAAACCCTTCCAACTTTTTTTCACCTGTGATTTTAAAATGCACAACAAAAGCCCATCTGTCCATTCAAAACAAACCGACTGAAACAGTCATTATCCCCATTTCATCATTGTTCTTCTGAGGAATAATAATGTTGTCCCACCAACCCTCAATATTTATAGTTGTTGCTGTTTTTAAGTTGATCTTGATTGTTTGTGCATGAGGAAATAAGATCCACATTTGTTCACTTCTTGAactgtatagatatatatataaattaattaATAAAGTATATATACCTTCATGTAAAGATTCACCCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00415 QCR2, UQCRC2; ubiquinol-cytochrome c reductase core subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1916634 lncRNA upstream 43969 23459332 ~ 23465663 (+) True G1675209
TU1916630 lncRNA upstream 46572 23459332 ~ 23463060 (+) False G1675209
TU1916633 lncRNA upstream 48187 23459332 ~ 23461445 (+) False G1675209
TU1916614 lncRNA upstream 66220 23437345 ~ 23443412 (+) True G1675195
TU1916610 lncRNA upstream 88020 23421386 ~ 23421612 (+) True G1675191
TU1916712 lncRNA downstream 61514 23580137 ~ 23582539 (+) False faap100
TU1916797 lncRNA downstream 164835 23683458 ~ 23683683 (+) True G1675345
TU1916798 lncRNA downstream 165107 23683730 ~ 23683992 (+) True G1675346
TU1916799 lncRNA downstream 166483 23685106 ~ 23685337 (+) True G1675347
TU1916800 lncRNA downstream 167031 23685654 ~ 23685859 (+) True G1675348
XM_036955530.1 mRNA upstream 6977 23493596 ~ 23502655 (+) False rac1
NM_001160673.1 mRNA upstream 8137 23493665 ~ 23501495 (+) True rac1
XM_036956028.1 mRNA upstream 79449 23396037 ~ 23430183 (+) False LOC110499199
XM_021576173.2 mRNA upstream 79449 23396038 ~ 23430183 (+) True LOC110499199
XM_036956032.1 mRNA upstream 113921 23369126 ~ 23395711 (+) True LOC118936387
XM_021576211.2 mRNA downstream 16293 23534916 ~ 23544723 (+) False LOC110499219
XM_021576212.2 mRNA downstream 16293 23534916 ~ 23544723 (+) True LOC110499219
XM_036956042.1 mRNA downstream 57806 23576429 ~ 23582556 (+) False faap100
XM_036956043.1 mRNA downstream 57943 23576566 ~ 23582556 (+) False faap100
XM_021576183.2 mRNA downstream 58065 23576688 ~ 23582556 (+) False faap100
TU1916535 other upstream 251563 23256804 ~ 23258069 (+) False LOC110499192
TU1915004 other upstream 1550005 21936642 ~ 21959627 (+) True LOC110513322
TU1914567 other upstream 1663766 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 1695806 21813245 ~ 21813826 (+) False tnrc6b
TU1914369 other upstream 2059286 21444883 ~ 21450346 (+) True G1673231
TU1916709 other downstream 61407 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 61514 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 61514 23580137 ~ 23581432 (+) False faap100
TU1916714 other downstream 61514 23580137 ~ 23581387 (+) True faap100
TU1919058 other downstream 1564041 25082664 ~ 25083277 (+) True G1677419

Expression Profile