RNA id: XM_021576212.2


Basic Information

Item Value
RNA id XM_021576212.2
length 1915
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110499219
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 23534916 ~ 23544723 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACATTGCCAGAGAACAGCGAGTTTTGTTACCGCTGATTCCATTGAGCTGATTCCCCCTTCACTACATTGCTAGGCTACATTATAACCTCGAATGGATACATCTGACGGGCATTACAGGCTACATTGTAACCTCGAATGGATACATCTGACGGGCATTGCAGGAGGGACAAATAACGGTATTTCTATTGAAGGGAGTATTGGCAGATTATGAAATCTGACCATTGCATACAATATATGTATTTATGGAATTTCCATTTGTTTGCAATGAAGACATCTCAGATGGAGAAGATAAACGGACACAGGAAAGAAGCGGTATAATATGCACTCTTGCAAGCATCTCTTAAATAACATAATTTCGGCGAAAATGGTCGCAGAACTTTTGAGTTTTCCTTTAACTCATCTTTCAAatatattttcctgacaccataaACTACCCTGTTGCGATACTGAGCTATGGTAATGGGTGAAACAGTGGGCGTTCATAGCCAGGGCCATGGTCGATCGTTATAAGGCAATGAAAGGAAACGGCTTTGCATAAATCCTACACCAGGACTGCTGCGTGAAGATGAGAGGCTTGCCCTTCTACCAAGAGGACAATGACAATACATCCACTGGGCATGACCAAAACATTGATATGGGACCTTGAAATCCATGCCTGAATCTCTTTTGTCCTATCTGCCCTTGGAGGGGGCGAGATAGAGGAGACTTTCCTCTTTGACTCAATATAAAGGAGAAGAGAGCATCCACGTCTGAGAAATGGATAAACTCTCCGTCATATCAGGATGTCTCTTTCTAGCAGCTGATATCTTTGCTATCGCCAGTATTGCCAATCCGGACTGGATCAACACAGGAGATGCAGCTGgtTCCCTGACGGTAGGCCTGGTGCGGCAGTGCCAGACCATCCACGGTCGTGACCGGACCTGTATCCCCCCGCGGCTGCCCCCAGAGTGGGTCACCACCCTCTTCTTCATCATCCTGGGCATCATCTCCCTCACGGTGACCTGCGGCCTGCTAGTGTTATCACACTGGTACCGTGAAGCCACTCGTTACGCCCGCTGGATTGCCTTCACTGGGAtgaTCCTGTTTTGTATGGCGGCTCTTATATTTCCTATAGGATTTTACATCGATGAGGTTGGGGGACAGCCTTATAAACTACCCAACAACACAGTGGTGGGGTCCTCATATGTACTCTTTGTCCTATCTATATTTTTCACTATAGTGGGACTACTGTTTGCAGGAAAGGTCTGCTTGCCTGGGTGACATATTGGACACTTAAGTGTCCCGCTTGCGTCGCCTCATTAGCTAGCTTTTGAGGTGGCGCCATCGGCTAAGACGCTTAAGGAGGGCGGCTACGTGTAAGGCAGAGGTCCTGAGTTCACGCCAGGTATGGGCCAAATCGTGAGGAAGTGGTACTGGCTAAGCAAGCAGCGTGACAGCATGACGTTTGAAAATGGATGCCTGGAAGGGAAAAATAGGAACTGTGAGAAACACACTTTCTCTGTGTTTGTGGAACTCTCTGATTTACCTTTGGATGACAGGTCTCTACAGCCCCTAGCCCTGGTCCCATAGGACAGGTAGTAGGCACTAGCCTGTCTGTGGTCATAGATATGGGAGGAATGGACACCTATCCAGTCCCTTCACAGATCAGTGAACACAGAAGTTTTGTTCCACGAATAGAGTGCCTTTTTGGGTAGTGTAACTTTttatttcacctaattttaacattttGTCATAAAAAGCACGTTTTAACGTCATAAGAAACATGTTTCTCCAACTccttttgaaaaaaataatttaaaaaggaATCATTTCACCATATTTAAACGAGAGTTCAGTtgacgtaacagggttgaccttaaaccTGAAGGACATGAATCACtaatcaaatgaaataaataatacatattCAGAAa

Function

GO: NA

KEGG:

id description
K23663 MOSMO; modulator of smoothened protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1916634 lncRNA upstream 69253 23459332 ~ 23465663 (+) True G1675209
TU1916630 lncRNA upstream 71856 23459332 ~ 23463060 (+) False G1675209
TU1916633 lncRNA upstream 73471 23459332 ~ 23461445 (+) False G1675209
TU1916614 lncRNA upstream 91504 23437345 ~ 23443412 (+) True G1675195
TU1916610 lncRNA upstream 113304 23421386 ~ 23421612 (+) True G1675191
TU1916712 lncRNA downstream 35414 23580137 ~ 23582539 (+) False faap100
TU1916797 lncRNA downstream 138735 23683458 ~ 23683683 (+) True G1675345
TU1916798 lncRNA downstream 139007 23683730 ~ 23683992 (+) True G1675346
TU1916799 lncRNA downstream 140383 23685106 ~ 23685337 (+) True G1675347
TU1916800 lncRNA downstream 140931 23685654 ~ 23685859 (+) True G1675348
XM_021576199.2 mRNA upstream 16293 23509632 ~ 23518623 (+) True LOC110499211
XM_036955530.1 mRNA upstream 32261 23493596 ~ 23502655 (+) False rac1
NM_001160673.1 mRNA upstream 33421 23493665 ~ 23501495 (+) True rac1
XM_036956028.1 mRNA upstream 104733 23396037 ~ 23430183 (+) False LOC110499199
XM_036956042.1 mRNA downstream 31706 23576429 ~ 23582556 (+) False faap100
XM_036956043.1 mRNA downstream 31843 23576566 ~ 23582556 (+) False faap100
XM_021576183.2 mRNA downstream 31965 23576688 ~ 23582556 (+) False faap100
XM_021576184.2 mRNA downstream 31966 23576689 ~ 23582556 (+) False faap100
XM_021576179.2 mRNA downstream 224047 23768770 ~ 23800554 (+) False LOC110499205
TU1916535 other upstream 276847 23256804 ~ 23258069 (+) False LOC110499192
TU1915004 other upstream 1575289 21936642 ~ 21959627 (+) True LOC110513322
TU1914567 other upstream 1689050 21833894 ~ 21845866 (+) False tnrc6b
TU1914569 other upstream 1721090 21813245 ~ 21813826 (+) False tnrc6b
TU1914369 other upstream 2084570 21444883 ~ 21450346 (+) True G1673231
TU1916709 other downstream 35307 23580030 ~ 23581387 (+) False faap100
TU1916707 other downstream 35414 23580137 ~ 23581387 (+) False faap100
TU1916710 other downstream 35414 23580137 ~ 23581432 (+) False faap100
TU1916714 other downstream 35414 23580137 ~ 23581387 (+) True faap100
TU1919058 other downstream 1537941 25082664 ~ 25083277 (+) True G1677419

Expression Profile