RNA id: XR_005037971.1


Basic Information

Item Value
RNA id XR_005037971.1
length 1372
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC118942054
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 23859982 ~ 23864171 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTATTCCTCCACCAGTTCTAGAATTATAGGGGCCATAATTTGATTTTTGCGTATCTGAATTATATGATTTTTGCATAGTGCAGCTTTAAAAACAAAAAAGTCCGGAGGcgttcccagctagcacatttggttccttggaagttgtgggaacgtatgtTTTTTGCTTCGCGTTGGTTGTGGGAACGACGTCATGCATTTCCTGACTAAAAAATATATAGGTTTTACCaaacattctgagaacagaagtgaacatTTTGTCTGGGACTTATTTTTTTCAGTTGCAggaacgttttactctggttccttgaaaGTTTTCCTTGGAGGTTTTATTAGCGCTCTGAGAACAGGTTCctatggggagggagagacaggccaGTACGTGGAGTGGCTGAGGGACTACTGCCAGGCCTTCTTTGGGCTGATGGTTAAGCTATTGCCTCCGGTGACCACTGCCGCCATGGTCTGTGCATTCAGGGTCAACTGCAGTTCACGCAACCTACAGATCCACACAGGTGGCAACACACATCTCTGTGTGCCTGGCAgacatctcagcttggatgtcagcCCACAACCTTAAGCTCAACCTCGAAAAAatggagctgctcttcctctcGGGAAAGGCCTGCCCACTCCAAGACCTTTCCACCACGGTTGATAACTCCACAGTGATGGGGAAACAAAGCTTCCTGAAGCGTTGAGGTTTTCCAGCCAAGTGTGTCAAAAAGGTTCATTACTCAAGGCTTTAATCAATCAACACAGTGTACACTAGTGGCACCTGCTGGTCAAAATAATTTAGAGTAGCCAAATTATTATAGATGACTTACCACCACGTAGCGTGTGCGCAGCATAGTCTTTTACCAAACCAATACCAATCCAATCAGGTGGTTGTTAGACTAAACAAAGCTCCGGATGTCATTGATCACGTGCTTCTGATAAAGTGATGCAGGCATCGGAACACCGCTTCTAAGTACACTGCTGTGCGTGCCTTGGAGCTCCGGCATAAGAGGTAACGTCGCTAAATCCATGGTGTCCCCCTTCCAGAGTGCAAAGAAACTTGGCATGACCCTGGACAACATCCTTtagttctctgcaaacatcaaagcagtgagtCACTCTTGCTGGTTAATGCGCTACAACAGGTgtattcaaatcttaccttacAAGGTCCTGCTCGTTTTCTTTTCTACCTGATACtaaattgcacccacctggtgtcccaggtaaaAATAAGTCCCTGATTAGGTGGGAACATCAAaaccctgcaacttatccagaatgccACAGCctgcctggtgttcaaccttaaGTTCTCTCATGTCACTCCACTCCTTCGAGGTGGAGCAATTACAGATCCTGGAGCATTGACAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1916913 lncRNA upstream 3813 23855836 ~ 23856169 (+) True G1675436
TU1916912 lncRNA upstream 4228 23855326 ~ 23855754 (+) True G1675435
TU1916899 lncRNA upstream 14568 23845049 ~ 23845414 (+) True G1675426
TU1916893 lncRNA upstream 22536 23837200 ~ 23837446 (+) True G1675420
TU1916847 lncRNA upstream 98039 23761740 ~ 23761943 (+) True G1675389
TU1916928 lncRNA downstream 8695 23872866 ~ 23909060 (+) True G1675450
TU1916943 lncRNA downstream 64319 23928490 ~ 23928706 (+) True G1675465
TU1916947 lncRNA downstream 70248 23934419 ~ 23934836 (+) True G1675469
TU1916949 lncRNA downstream 72174 23936345 ~ 23936559 (+) True G1675471
TU1916920 lncRNA downstream 100313 23964484 ~ 23967320 (+) True G1675442
XM_021576200.2 mRNA upstream 6098 23846856 ~ 23853884 (+) True LOC110499213
XM_021576179.2 mRNA upstream 59428 23768770 ~ 23800554 (+) False LOC110499205
XM_021576197.2 mRNA downstream 6319 23870490 ~ 23887420 (+) False LOC110499210
XM_036956047.1 mRNA downstream 6319 23870490 ~ 23887420 (+) False LOC110499210
XM_036956046.1 mRNA downstream 9148 23873319 ~ 23887420 (+) True LOC110499210
XM_021576203.2 mRNA downstream 30466 23894637 ~ 23905815 (+) False prkar1ab
XM_021576202.2 mRNA downstream 32571 23896742 ~ 23905815 (+) True prkar1ab
TU1916710 other upstream 278550 23580137 ~ 23581432 (+) False faap100
TU1916709 other upstream 278595 23580030 ~ 23581387 (+) False faap100
TU1916707 other upstream 278595 23580137 ~ 23581387 (+) False faap100
TU1916714 other upstream 278595 23580137 ~ 23581387 (+) True faap100
TU1916535 other upstream 601913 23256804 ~ 23258069 (+) False LOC110499192
TU1919058 other downstream 1218493 25082664 ~ 25083277 (+) True G1677419
TU1919386 other downstream 1772520 25636691 ~ 25641614 (+) True G1677738
TU1920693 other downstream 2598023 26462194 ~ 26467953 (+) True G1678963
TU1920824 other downstream 2767964 26632135 ~ 26633198 (+) True LOC110499256
TU1920840 other downstream 2790456 26654627 ~ 26656111 (+) True LOC110499259

Expression Profile