RNA id: XM_036956047.1


Basic Information

Item Value
RNA id XM_036956047.1
length 2484
RNA type mRNA
GC content 0.51
exon number 11
gene id LOC110499210
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 23870490 ~ 23887420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTAACGAACCCTCTGGTAACTGTGGGTATGTGTGAACGCGCATTTTTGGCGTGAACGTGCACGTTCTTCGAGTCTGCAATAACTCTGCAAGCAAGACGTCACTGTAAAGCGGTCTTGAACCAGAATGTCAGGGAGTGTCTTCCTGCTCCTATTAGCTGGGACCCTGCTCTGTGGGCTACTGTTCCACACAGTGAGCCATAATGAAGCTGGGGACAGGACCCGCACCAAGAGACCCAACTTCATCATCATTCTGGCAGATGATATTGGATGGGGAGACCTAGGTGCCAACCAGCAGGCAGGTCAGAGTTCAAGCCAGACCCCTCATCTGGATCTGATGGCCCAGCAAGGAATGAGGTTGACAGACTTCCACTCCCCAGCCTCCACCTGCTCCCCGTCCCGTGCTGCTCTCCTCACAGGCCGACACGGCCTGCGGAACGGGGTCACACACAACTTCGCTGTGGGGTCCGTGGGGGGGCTACCCCTCTCTGAGACCACCCTGGCCGAGATACTGCACCAGGGTGGATACTACACAGCCATGATtgGTAAATGGCATCTAGGGCACAATGGTCCATACAGTCCCACCAACAGAGGTTTTGACTACTACCTGGGGATCCCATACAGTAATGATATGGGCTGTACAGACCTGCCTGGGTACGAACTGCCCTCCTGCCCTCCCTGTTAccctggaccacagatactacACAACAGGGAACGGGGACAACCTTTTCTGCTCTATGTAGCTCTGGCACACATGCACGTCCCCCTGTCCCCCCCTTCCTACGCCCCCCACCCCTCAGAGGGCGGTGTGTACGCTGCCAGTCTGCGGGAGATGGACGGTCTGGTGGGGGCAATAAAGAATGCATCTGATGCCTCAGACAAGGAGAACACTCTCATCTGGTTCACTGGTGATAATGGCCCCTGGGAGCAAAAGTGCCAGTATGCAGGAAGTGTGGGTCCTTTCCTGGGGAAGTGGCAGACCAGCAGAGGTGGGGGCTCTGCCAAGCGGACCACTTGGGAGGGGGGGCACAGGGTGCCCACAGTGTCCTACTGGCCTGGCAGAGTACCAGCCAACAGCACCAGCTCTGCCCTGCTCAGTGGTCTGGATATcttccccaccctcctctccctagCTGGAGTGAACCCCCCATCAGACAGACGCTATGACGGTATTGACGCCACAGACGTCCTCCTACACGGCAAAGAAACAGGAAATGAGTTCCTCTTCCACCCCAACAGTGGCGCTGCAGGGAAGTATGGGGACCTGCAGACTGTCAGACTGGGGCGCCACAAGGCCTTCTACATCACGGGTGCGGCTGAGGCGTGTGGGGGGTCTAAAGGGAGGCAGGAGCTCCACGACCCCCCTATGATATTTGACCTGTCTGGGGACAAGGGCGAGGAGACACCCCTGGACCCCACCACGGAGGAGTACAAGGAGGTGGAtgagagggtgaggaggtggagggaggcgCTGCTCTATGACATTGCCACTGACCAATCAGTGTCCACGGCCGACTACGCCACAGACCAATCAGCAGCCCCCTGCTGTGACCCCCGGCACACAGCCTGCCGCTGCCTCACCCTGGGCTGAGGACACACACATTCAGTGTTACACACAGTTTGACATTCACAGAAAGCCCGActgacacgcagacacacacacactttagtttTAGTCCAATAATTGTTTGCTCTTGGAGGTATTTGCGTGCCCATGGGAATGTAGAAATCACAGACCTGTAGCTTACATCTGGGTTAATGTAAACAACCCCAGAGACCAACCAGAAACATTTGCCAGAGTGAAGAAGAAAAGCAAATATTAGAACTAGCATCAGCCTGTTGTGAGGAGGCCGGACTGTGGGTCATTCTCCTGGAGGTCAGTACTGGGGATTGACTGAGACACATTGCTCACTGCTGCTCTGAGGGGAAACATGGGAAGACAGCTGCTGTTGCGTAGCAAGGACAATTTACTGTATTATTACCAATATTAAGTGTTTTCCTGTACACAGGCTTTTTGTACAGTTATATAACAGAGGCTTCTGGGTTGCTCTAGCACTCTCTGGTGGGGAGTATATGACCCTGCAATAAGTAGGATGAAGTTGCCAATACACTGATCTAAGACCAGTTTAGTTTGTCCCACGAATAACTTCACTTTAACCCAAAATCAAAACATCCGAAGAACAAAAAGCACCACCCTTTGGCAAATCAGTCACAGGATCATAACAATAGGTGTGCTATCTACATACTATatgtataaatgtatatataaacaAACAATAAAAAATCACTTTCCGCCAAAACCAAAAGATCTATTGATGAATAATACTAATTTCATTTTCCAAAAGAGTATTTAATACAAGTCAACATAGTTTttttacaaagtaaaaacatCTGTTATGTCTGAAATGTTACAATATTCAATATTATTTTGTCAATGGTGTTAATAATGAAATCAATTAAATAAAAGGACCTGTACGATCCTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1916913 lncRNA upstream 14321 23855836 ~ 23856169 (+) True G1675436
TU1916912 lncRNA upstream 14736 23855326 ~ 23855754 (+) True G1675435
TU1916899 lncRNA upstream 25076 23845049 ~ 23845414 (+) True G1675426
TU1916893 lncRNA upstream 33044 23837200 ~ 23837446 (+) True G1675420
TU1916847 lncRNA upstream 108547 23761740 ~ 23761943 (+) True G1675389
TU1916943 lncRNA downstream 41070 23928490 ~ 23928706 (+) True G1675465
TU1916947 lncRNA downstream 46999 23934419 ~ 23934836 (+) True G1675469
TU1916949 lncRNA downstream 48925 23936345 ~ 23936559 (+) True G1675471
TU1916920 lncRNA downstream 77064 23964484 ~ 23967320 (+) True G1675442
TU1916965 lncRNA downstream 81928 23969348 ~ 23969871 (+) True G1675487
XR_005037971.1 mRNA upstream 6319 23859982 ~ 23864171 (+) True LOC118942054
XM_021576200.2 mRNA upstream 16606 23846856 ~ 23853884 (+) True LOC110499213
XM_021576182.2 mRNA upstream 69936 23768770 ~ 23800554 (+) False LOC110499205
XM_021576203.2 mRNA downstream 7217 23894637 ~ 23905815 (+) False prkar1ab
XM_021576202.2 mRNA downstream 9322 23896742 ~ 23905815 (+) True prkar1ab
XM_021576185.2 mRNA downstream 59240 23946660 ~ 23964458 (+) False lrrc45
XM_021576187.2 mRNA downstream 59240 23946660 ~ 23964458 (+) False lrrc45
XM_021576186.2 mRNA downstream 59374 23946794 ~ 23964458 (+) False lrrc45
TU1916710 other upstream 289058 23580137 ~ 23581432 (+) False faap100
TU1916709 other upstream 289103 23580030 ~ 23581387 (+) False faap100
TU1916707 other upstream 289103 23580137 ~ 23581387 (+) False faap100
TU1916714 other upstream 289103 23580137 ~ 23581387 (+) True faap100
TU1916535 other upstream 612421 23256804 ~ 23258069 (+) False LOC110499192
TU1919058 other downstream 1195244 25082664 ~ 25083277 (+) True G1677419
TU1919386 other downstream 1749271 25636691 ~ 25641614 (+) True G1677738
TU1920693 other downstream 2574774 26462194 ~ 26467953 (+) True G1678963
TU1920824 other downstream 2744715 26632135 ~ 26633198 (+) True LOC110499256
TU1920840 other downstream 2767207 26654627 ~ 26656111 (+) True LOC110499259

Expression Profile