RNA id: XM_021576186.2


Basic Information

Item Value
RNA id XM_021576186.2
length 2807
RNA type mRNA
GC content 0.53
exon number 18
gene id lrrc45
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 23946660 ~ 23964458 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAACAACAACTAACAAGGTTTGATCTTTGCAAAAACCTTATAGCGATGTGATCTACGGTGTAAATTCTTCtcgtttcttctttttttttttagctaggAAGCAATATATTGCAGGAAGGTGAACAGCTCCATCAGGCCAGGGCGACAGCACAGTGCTGGGCAGGATCGGAGGGTCCGGGAAGGAACAAAGAAAAACTGAAGAGGAAAAGAAGGGGTGAGTGGGCGGATGAGGGATTGAAGCAGCACAGAGAACccggagaggaacagagggactgaaagagaggaggagaatactAGTAACAAACGACAGAGGAGCTCAAAAGGAATCCAAACAGCTCTGAGACAGTGTACGGCCCAGTATGGAGGATTTCAGACGGACCTACCTGCGTCTGTGTAAGGAGGGGGGTGTGGATCCCCAGGAGTCAGTGCTAGCTCAGCTCCAGGAGACCAGGAGAGCCGCAGCAGGATCCAGGCTGGACCTGAGGGGACACAGCCTGTCTGTAGACACCTGTGCCGTGCTGGGGAGGGTCCTTCACAAAGACACACTCTTCACCGAGCTGGCCCTCAGTGACTGCATGCTCACTGAGGAAGGTGCCAAGCTGCTCCTGAATGGGCTGTGTGCCAACACTACTGTTAAAGTCCTGGATCTGAAGGGAAATAACTTGAGATCAACAGGAGCTGAGGCTTTAGGGAAGCTGTTGGTGAGAAACAAGACACTGTGCAGGCTGGTGTTGGAGTGGAATGCGTTGGGGATGTGGGAGGAGGCGTTCTCAGTGTTCTGTGAGGGTTTGGCCACCAACGCCTGTCTAACCCAGCTGGACCTGCGCAACAACCAGATCAACCACCAGGGGGCCTCGGAGCTCTGCCTGGCCCTCAAGCGGAACAGCACCCTGCAGGAACTGGATGTGAGGTGGAACAACATTGGTCTGCTGGGTGGCCGGTCCTTCCTGGAGGCTCTACAGCAGAACAGGACACTGACACACCTGGAGATGGCTGGAAACAACATCCCCAGCGACACACTCAAAGCCCTCGAGCAGGCGATGGATCATAACTCGGACAGGCAGTCCACTGTGAGAGAGAGCCGCAGCAGAACCCAAGTCCTCAGCAAGGAGATCCAGATCCTCAAGGAGGAGAAGGGACGCCAGttTCTGAGTCTGATGGAGACcatagacaaacagagagacgaGATGGGCCGAAGCACCAGGTCAGCGACCACATCTATCCATGTGGGTCAGCTACAGGAGGCCCTGAACGAGAGGAAGTCTGTTGTCAACTCTCTCACAGCCAAATTCCAGATGACTGAGGCAGCACTGGCCATGTCGGAACAGAAGAACCACAACCTGGGAGAGCTGCTGACCAGAGTGAAGACTGAGAAAGATGAGcagagagaacgacagagcagggagaggaagaaagaacaGGAGGACAGTGCTCTGAGGGAGGGGAAGCTCCTCAGAGAGATTACCAGTATGTCAGAGACAAACGTACAGCTCAAGAATAAGttggAGAAGATGGAGAGCAGGTGTAAGTCTCAGCAGGACCAGATTTTTGAGCTGAAGCAGGAGCTCACCAACAGCACAGCAGAGCTAAAGCTACGGCTAGCACAGGCAGaagAGCGTTTGGAGATGGAGAAGAAGAGATCTAAACAGTCTCTGGAGGACATGAATAACCTTcgacagaaagagGTGGACCATGTGAATCGTCACCTTGAGGAGAGTGAGAGGGCTCTACAGGACCGGATCCTCAAACTGGAGGGACAGCGGATACAGCTGGAGGAGGAGTTGAGCAGGGCAAAGGCAGCCTGTGTTACAGAGAGAGCCCAGGCAGAGGAGGAACAGGGGAAGGTGCGGGTACAGGTTCGCCTGGAGGAGCAGCAGCGTGTGAGTGGGTTAGAGGAGAAGCTGCGTGGGTTGCGTCAGTCCCGTGATGAGTCCCAGAGCCACTGTTCCCAGCAGAAACAGACCATAGCTGAGCTGCAGGCTCGTAGTGGACAGCAGAGCATCGAGACAGACGGACTACGACGCAGGATAGAGGAGCTGCAGCAGGAGTTGTCTGGTAAGGACCAGGAGAAGGTTGCAGAGGTGAGTCGGGTCAGGGTGGAGCTACAGGAGCAGATGGGACACCTGCAGGCTGAGAGGACCGCACAGGGAGGACTGAAGGAGAAGATAGCtgctctggagagagagatgaaagTGCTGGCCAGTAACCACAGAGAGGCCACCCTGGACAAGGAGAGTGAGATATCATCTCTGTTTGAGAAGCTGAgactgagagaggcagagatccagaggatgagagaggacgAGGCCCAGAGAGCTAGCTTCCTCCAGAACGCTATACTCACATACGTACAGGGGTCACCGTTGCACTACAGTCCTAAGAAGTGACCTCTGACATCTAACCTTTGACCCTTCCCATCCTTATGTACGGACTAAGTACAGGGGTCACCACTGGGGTTCTGCAGTCCCAAGAaataacctctgacctctaacccctgcccTATTTACCCCTACAACCTTGTGCCCATACACCCTCACAAAGTGGGATACTAAAGTGACCCAAACCTTTCTATTACACCCATactccatgtgttcctctccggtccttccccctctcccctttggTCCCTCCAAACTACCCCAGCACAAAATATCAACAGCACAGATATTCACCTCTAGACATCCGCAGCTTcgggtgtacagtgcattcgtagAGTATTCAGatccctcgactttttccacattttgttacgttacagccttattctaaaatttattaaatagttttttcccccctcatcaatct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1916949 lncRNA upstream 10235 23936345 ~ 23936559 (+) True G1675471
TU1916947 lncRNA upstream 11958 23934419 ~ 23934836 (+) True G1675469
TU1916943 lncRNA upstream 18088 23928490 ~ 23928706 (+) True G1675465
TU1916928 lncRNA upstream 37734 23872866 ~ 23909060 (+) True G1675450
TU1916913 lncRNA upstream 90625 23855836 ~ 23856169 (+) True G1675436
TU1916920 lncRNA downstream 26 23964484 ~ 23967320 (+) True G1675442
TU1916965 lncRNA downstream 4890 23969348 ~ 23969871 (+) True G1675487
TU1916966 lncRNA downstream 13850 23978308 ~ 23978530 (+) True G1675488
TU1916967 lncRNA downstream 14953 23979411 ~ 23979626 (+) True G1675489
TU1916968 lncRNA downstream 15425 23979883 ~ 23980087 (+) True G1675490
XM_021576203.2 mRNA upstream 40979 23894637 ~ 23905815 (+) False prkar1ab
XM_021576202.2 mRNA upstream 40979 23896742 ~ 23905815 (+) True prkar1ab
XM_021576197.2 mRNA upstream 59374 23870490 ~ 23887420 (+) False LOC110499210
XM_021576210.2 mRNA downstream 8034 23972492 ~ 23977455 (+) False LOC110499218
XM_021576209.2 mRNA downstream 8036 23972494 ~ 23977455 (+) False LOC110499218
XM_021576208.2 mRNA downstream 8040 23972498 ~ 23977455 (+) True LOC110499218
XM_036956051.1 mRNA downstream 56229 24020687 ~ 24028498 (+) False LOC110499226
XM_036956052.1 mRNA downstream 56229 24020687 ~ 24028498 (+) False LOC110499226
TU1916710 other upstream 365362 23580137 ~ 23581432 (+) False faap100
TU1916709 other upstream 365407 23580030 ~ 23581387 (+) False faap100
TU1916707 other upstream 365407 23580137 ~ 23581387 (+) False faap100
TU1916714 other upstream 365407 23580137 ~ 23581387 (+) True faap100
TU1916535 other upstream 688725 23256804 ~ 23258069 (+) False LOC110499192
TU1919058 other downstream 1118206 25082664 ~ 25083277 (+) True G1677419
TU1919386 other downstream 1672233 25636691 ~ 25641614 (+) True G1677738
TU1920693 other downstream 2497736 26462194 ~ 26467953 (+) True G1678963
TU1920824 other downstream 2667677 26632135 ~ 26633198 (+) True LOC110499256
TU1920840 other downstream 2690169 26654627 ~ 26656111 (+) True LOC110499259

Expression Profile