RNA id: XM_021576209.2


Basic Information

Item Value
RNA id XM_021576209.2
length 2309
RNA type mRNA
GC content 0.44
exon number 5
gene id LOC110499218
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 23972492 ~ 23977455 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCGCCACTCTTCATCGACCCCCTTTCACTGCGGCTCAAAAGCTGAGCGGACTGGCCCGCTTCTCATACAAATCACAGCTAGCTTTCattgtgaaatatatatttttaaaaacactTCTTTCGGCTTTGTGACACCGCCTGCTCCTTCGCAAATGCAAGCAATTAAATGCGTGGTGGTCGGCGACGGGGCCGTGGGTAAGACCTGTCTGCTGATCAGCTACACCACCAATGCCTTCCCCGGAGAGTACATACCCACtgtCTTTGACAACTACTCTGCCAATGTGATGGTAGATGGGAAACCAGTGAATCTGGGTCTATGGGATACAGCAGGACAGGAAGACTACGACAGACTCAGACCACTGTCCTATCCACAGacgTGGTACCCTGAAGTGAGACACCACTGCCCCAACACCCCAATCATCCTGGTGGGCACCAAGCTGGATCTGAGAGATGACAAGGACACCATCGAAAGGCTGAGGGACAAGAAGCTGTCCCCCATCACCTACCCCCAGGGTCTGGCCATGGCACGGGAGATAGGTGCTGTGAAGTACCTGGAGTGCTCTGCCCTGACCCAGCGAGGGTTGAAGACTGTGTTTGACGAGGCCATCCGCGCCGTGCTCTGCCCCCCACCCGTCAAGAAGAGGGGCAAGAGGTGCACCGTGTTCTGAGGGCTCTCATTGGTCCAGGAGAAACAGCCAATATGGCGGCCATTGTCTGGTACTACTAAAACATCACCATAATGACCACTACTTCTCTTCGGGACGAATCTTGACTTGAGACACCACGTAACGGCAATTTAACTGATGTTTGTGTAAATAACACATTCATGTCAATGGAATATTTGATCTTAAGTTAGGATTTGGCCCGAAGAGAAAGAGAATTActggactttttttttttacagtgggaAAACGATTTGATCTGGTGTAAAGATATGCGTCGTCAAGTTTCCATTTGTCTGTTTTCCACAGAGGAAAGTACTCCTCTGTGGACAGTTAAAGTGTCTACTCTCACTCATACAACCCTCATCCCTCTCAGTCTTGTTTGCTTGAGTTGATACAGCACTCAAAACAGCCTGTACTGTGAATATGTGGCTCTGGGTTGAAGTTGCCCTTagttacagatctaggatcagcgtaCCCACCTCAAATCCTAACCTTCACCATTACGGggagaaaaaaacacaaaactgaccttagatcagtgtttaGGGTCAATTTCACCCTACTCTGTGAAGTGAATAATGTGATAAACAGACAAGCATGCCAAAAGTGGGGGCTGTACAACCTTGCTGCCTGAGTAATGCCTCTGATGGAGGTGCCTGCATGGGTCTAAACAATCTGTCTTCATTTTCCCAACGTCCTTTGTATATGTTCATTTGcgcgtgtgggtgggtgtgtgtgggagtgtgtgtgtgtgtgttcgcatgtcactgtatgtgtgagagagtaaAGTTTCAAGCAGTGTCAAGTTTTTGGTACTATTTCGTATTGTAGTGATACACAAGACTTTGCAACAAACTGTCGACTCAAAAAAAGAAAAGGGAAATGGACGATCACAATCGTGGTCTGTTTTATGTGTTAACCAAACTAAGTCTagtaacgtttaaaaaaataaaataaaaaaaccttTGGAGGAGGAATTAATTATGgatatatctatttattatgtACCTGAATATTTAACTCTTTAATTCCAGACAATTCAAAATAAAAGGATAATAGTAACTCACTTTGACTCTAGGAGGTATCATATTGCAAACATATATAATTAATTAACCAGTGCATTTCTGTGGTGGTTGTGGACCTGCAGTATAACTGTATGTCCCACTCTGGTGGTGAGATACAGAACTGCAGTCTTCTCTGTCATGACGTTAGTGGTTGGCATAGCAACTGTGGTTGAATAATGTGTCTCTGAGCCTGTCCAAGGTGTCAATACTGGCTTTGGGTAGAAGTTTTCCTCAggagcagatctaggatcagcttaccactactcaatcctaaccttaaccattagggggGATTTGCAAAACTGGTCTTAGATCAGTGTCAAGGGGTAACTTCATCCTATTCCTCAATACTGTAGATCAGAATTCTGAAAAGctactaaaactactactgcATGGATATGAACTGGTGATTCGAGCCCATTGTTATTAAGAAGAAAGCTTTTTTTAATGCACTGGCAATGTACTGTAAGATGACTTGTATAATGGTTTAATTGTTTGTCTTATTTTTTATGACTTCACATGTCAGTGTCGTGATATCTTTCAATTTtgtataataaatacaaatgtatatGTAACAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1916965 lncRNA upstream 2623 23969348 ~ 23969871 (+) True G1675487
TU1916920 lncRNA upstream 5174 23964484 ~ 23967320 (+) True G1675442
TU1916949 lncRNA upstream 35935 23936345 ~ 23936559 (+) True G1675471
TU1916947 lncRNA upstream 37658 23934419 ~ 23934836 (+) True G1675469
TU1916943 lncRNA upstream 43788 23928490 ~ 23928706 (+) True G1675465
TU1916966 lncRNA downstream 853 23978308 ~ 23978530 (+) True G1675488
TU1916967 lncRNA downstream 1956 23979411 ~ 23979626 (+) True G1675489
TU1916968 lncRNA downstream 2428 23979883 ~ 23980087 (+) True G1675490
TU1916975 lncRNA downstream 19597 23997052 ~ 23999931 (+) True G1675497
TU1916986 lncRNA downstream 50932 24028387 ~ 24090566 (+) True LOC110499226
XM_021576185.2 mRNA upstream 8036 23946660 ~ 23964458 (+) False lrrc45
XM_021576187.2 mRNA upstream 8036 23946660 ~ 23964458 (+) False lrrc45
XM_021576186.2 mRNA upstream 8036 23946794 ~ 23964458 (+) False lrrc45
XM_036956044.1 mRNA upstream 8036 23946826 ~ 23964458 (+) True lrrc45
XM_021576202.2 mRNA upstream 66679 23896742 ~ 23905815 (+) True prkar1ab
XM_036956051.1 mRNA downstream 43232 24020687 ~ 24028498 (+) False LOC110499226
XM_036956052.1 mRNA downstream 43232 24020687 ~ 24028498 (+) False LOC110499226
XM_021576220.2 mRNA downstream 43875 24021330 ~ 24028881 (+) False LOC110499226
XM_036956059.1 mRNA downstream 168610 24146065 ~ 24169492 (+) False slc16a3
XM_036956060.1 mRNA downstream 168610 24146065 ~ 24169492 (+) False slc16a3
TU1916710 other upstream 391062 23580137 ~ 23581432 (+) False faap100
TU1916709 other upstream 391107 23580030 ~ 23581387 (+) False faap100
TU1916707 other upstream 391107 23580137 ~ 23581387 (+) False faap100
TU1916714 other upstream 391107 23580137 ~ 23581387 (+) True faap100
TU1916535 other upstream 714425 23256804 ~ 23258069 (+) False LOC110499192
TU1919058 other downstream 1105209 25082664 ~ 25083277 (+) True G1677419
TU1919386 other downstream 1659236 25636691 ~ 25641614 (+) True G1677738
TU1920693 other downstream 2484739 26462194 ~ 26467953 (+) True G1678963
TU1920824 other downstream 2654680 26632135 ~ 26633198 (+) True LOC110499256
TU1920840 other downstream 2677172 26654627 ~ 26656111 (+) True LOC110499259

Expression Profile