RNA id: XM_036956051.1


Basic Information

Item Value
RNA id XM_036956051.1
length 2210
RNA type mRNA
GC content 0.52
exon number 15
gene id LOC110499226
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 24020687 ~ 24090566 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGATAGCGAGCCGTTGTTTGTTGCTGTAGACTCAGATTATCCATCatattacattttagtcatttaaaatACACTCTTATCTAGAGCTATTTACAGTAGCGAGTGGATACATTGTACATTTTTCTGGTCCCACATGGGAAtaaaacccacaaccctggcgttgcaagcgccatgctcttcCAACTGAAACACGGGACCATATCGACCAGTTAATCGACTGGCTGCTCCAACAATGACAATAAATGTCTTCAGAAATGGAAGGCAGTCTGGAGaaggcaagatcaggtgggacaattctagccaatgagaggacaGATACGAGTGTGATAACAGGCACAAAtccgatataaagtgtttttttttcctcAAACTTGGCAGGATATCATGtatcctacttatatcagtacactcgtaacaacCGGGaaaaacgccacctgctggagaagacagatttaGGTCCCAGTTATCCGTCTCGCTTCGCTTCTTCCTCTCTGCCGCTGAACGTCACAGACCGTGAAAGATGCCTTTGCCCGTGCAAGTATTCAACTTTCAGGGGGTTGTTGAGCCCATGCAGATAGATGCTGACCCACAGGAGGACCAGCAGAATGCACCAGATGTCAACTATGTGGTGGAAAACCCCACGCTGgaCCTGGAGCAATATGCATCCAGCTACTGTGGTCTGATGCGTATTGAGAGGCTGCAGTTCATTGCAGAGCACTGTCCCCAGCTCCGCGCCGAGGCCCTGAAGATGGCCCTGTCTTTTGTCCACAGGACCTTCAACGTAGACGTGTATGAGGAGATCCACCGCAAGCTCACAGAGGCCACCAGagagGTCCAGGGGGCTCCAGATGCTGCGGTGGAGGGCGGGGCAGTTGAACCCCCTCCTCTGGACACAGCGTGGGCCGAGTCGACCAGGAAAAAGGCCCTGCTCAAACTGGAGAAATTGGACACTGACCTGAAGAACTACAAAGGCAACTCCATCAAAGAGAGCATCAGGAGGGGTCATGATGACCTTGGGGACCACTACTTGGACTGCGGTGATCTCAGCAACGCCCTTAAGTGCTACTCCCGAGCCCGAGACTACTGCACTAGCGCCAAGCATGTCATAAACATGTGTCTTAATGTCATCAAGGTTAGCGTCTACCTCCAGAACTGGTCCCACGTCCTTAGCTATGTGAGCAAAGCTGAATCCACTCCGGAGATAGCAGAGcaaagaggggagagagattgcCAGAGTCAGTCAGTCCTCACCAAATTAAAATGTGCTGCAGGCCTAGCTGAGCTGGCCTCCAGAAAGTACAAACAAGCAGCCAAGTGCTTCCTGCTGGCCTCTTTCGACCACTGTGACTTTGCTGAGCTCCTGTCCCCCAGCAATGTAGCTGTGTACGGAGGGATGTGTGCCCTCGCCACCTTCGACAGACAGGAGCTACAGAAGAACGTAATCTCAAGCAGCTCCTTTAAATTATTCTTAGAGTTGGAGCCTCAGGTCCGTGACATCATCTTTAAGTTCTATGAGTCAAAGTACGCTTCCTGTCTCAAAATGCTGGATGAGATCAAGGATAACCTGCTGTTAGACATGTACCTGGCCCCCCACGTACTGACCCTCTACACACTGATCAGGAACAGAGCCCTTATACAGtacTTCAGCCCGTACGTGTCTGCAGACATGACTAAGATGGCCCAGGCCTTCAACACCACGGTGCTAGCTCTGGAAGACGAACTCACCCAGCTCATACTGGAGGGACTTATCAATGCACGCATAGACTCCCATAGCAAGATCCTGTATGCGCGTGACGTGGACCAGCGGAGCCACACATTTGAGAAGTCTATCCACATGGGCAAGGAGTTCCAGAGGCGAGCCAAAGCCATGATCTTGCGAGCTGCTGTGCTGCGCAACCAGATACACGTCAAGtctcctccCAGGGAGGGCAGCCAAGGTGAACTCAACTCTGCCAACAGCCAATCACgaatgagcaccaacatgtgaacaTTCCCATGAGACCTCTGTCTTACAGGAAGTTACcatgtcagggggggggggggggtctgccaGGGGGAcctagcacccccccccccccccccccccccccccccatctgaggATCCCCCTCCTCCTGCTGACTCAGTGCTGCATCTTTTGCCTGCAGAAAGAAAAATACTGAGACGTCAACTTCAATAGGCTGTGTCTTAAATGGTgcccctattcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1916975 lncRNA upstream 20756 23997052 ~ 23999931 (+) True G1675497
TU1916968 lncRNA upstream 40600 23979883 ~ 23980087 (+) True G1675490
TU1916967 lncRNA upstream 41061 23979411 ~ 23979626 (+) True G1675489
TU1916966 lncRNA upstream 42157 23978308 ~ 23978530 (+) True G1675488
TU1916965 lncRNA upstream 50816 23969348 ~ 23969871 (+) True G1675487
TU1917043 lncRNA downstream 53852 24082350 ~ 24083181 (+) True G1675556
TU1917083 lncRNA downstream 150451 24178949 ~ 24179418 (+) True G1675586
TU1917082 lncRNA downstream 151861 24180359 ~ 24186488 (+) True G1675585
TU1917163 lncRNA downstream 212869 24241367 ~ 24241730 (+) True G1675662
TU1918191 lncRNA downstream 375954 24404452 ~ 24404811 (+) True G1676609
XM_021576210.2 mRNA upstream 43232 23972492 ~ 23977455 (+) False LOC110499218
XM_021576209.2 mRNA upstream 43232 23972494 ~ 23977455 (+) False LOC110499218
XM_021576208.2 mRNA upstream 43232 23972498 ~ 23977455 (+) True LOC110499218
XM_021576185.2 mRNA upstream 56229 23946660 ~ 23964458 (+) False lrrc45
XM_021576187.2 mRNA upstream 56229 23946660 ~ 23964458 (+) False lrrc45
XM_036956059.1 mRNA downstream 117567 24146065 ~ 24169492 (+) False slc16a3
XM_036956060.1 mRNA downstream 117567 24146065 ~ 24169492 (+) False slc16a3
XM_036956058.1 mRNA downstream 117569 24146067 ~ 24169492 (+) True slc16a3
XR_005037973.1 mRNA downstream 155061 24183559 ~ 24189459 (+) True LOC118942055
XR_002469986.2 mRNA downstream 601045 24629543 ~ 24632101 (+) True LOC110499595
TU1916710 other upstream 439255 23580137 ~ 23581432 (+) False faap100
TU1916709 other upstream 439300 23580030 ~ 23581387 (+) False faap100
TU1916707 other upstream 439300 23580137 ~ 23581387 (+) False faap100
TU1916714 other upstream 439300 23580137 ~ 23581387 (+) True faap100
TU1916535 other upstream 762618 23256804 ~ 23258069 (+) False LOC110499192
TU1919058 other downstream 1054166 25082664 ~ 25083277 (+) True G1677419
TU1919386 other downstream 1608193 25636691 ~ 25641614 (+) True G1677738
TU1920693 other downstream 2433696 26462194 ~ 26467953 (+) True G1678963
TU1920824 other downstream 2603637 26632135 ~ 26633198 (+) True LOC110499256
TU1920840 other downstream 2626129 26654627 ~ 26656111 (+) True LOC110499259

Expression Profile