RNA id: XM_021576220.2


Basic Information

Item Value
RNA id XM_021576220.2
length 2071
RNA type mRNA
GC content 0.52
exon number 14
gene id LOC110499226
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 24020687 ~ 24090566 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGCCTTTGCCCGTGCAAGTATTCAACTTTCAGGGGGTTGTTGAGCCCATGCAGATAGATGCTGACCCACAGGAGGACCAGCAGAATGCACCAGATGTCAACTATGTGGTGGAAAACCCCACGCTGgaCCTGGAGCAATATGCATCCAGCTACTGTGGTCTGATGCGTATTGAGAGGCTGCAGTTCATTGCAGAGCACTGTCCCCAGCTCCGCGCCGAGGCCCTGAAGATGGCCCTGTCTTTTGTCCACAGGACCTTCAACGTAGACGTGTATGAGGAGATCCACCGCAAGCTCACAGAGGCCACCAGagagGTCCAGGGGGCTCCAGATGCTGCGGTGGAGGGCGGGGCAGTTGAACCCCCTCCTCTGGACACAGCGTGGGCCGAGTCGACCAGGAAAAAGGCCCTGCTCAAACTGGAGAAATTGGACACTGACCTGAAGAACTACAAAGGCAACTCCATCAAAGAGAGCATCAGGAGGGGTCATGATGACCTTGGGGACCACTACTTGGACTGCGGTGATCTCAGCAACGCCCTTAAGTGCTACTCCCGAGCCCGAGACTACTGCACTAGCGCCAAGCATGTCATAAACATGTGTCTTAATGTCATCAAGGTTAGCGTCTACCTCCAGAACTGGTCCCACGTCCTTAGCTATGTGAGCAAAGCTGAATCCACTCCGGAGATAGCAGAGcaaagaggggagagagattgcCAGAGTCAGTCAGTCCTCACCAAATTAAAATGTGCTGCAGGCCTAGCTGAGCTGGCCTCCAGAAAGTACAAACAAGCAGCCAAGTGCTTCCTGCTGGCCTCTTTCGACCACTGTGACTTTGCTGAGCTCCTGTCCCCCAGCAATGTAGCTGTGTACGGAGGGATGTGTGCCCTCGCCACCTTCGACAGACAGGAGCTACAGAAGAACGTAATCTCAAGCAGCTCCTTTAAATTATTCTTAGAGTTGGAGCCTCAGGTCCGTGACATCATCTTTAAGTTCTATGAGTCAAAGTACGCTTCCTGTCTCAAAATGCTGGATGAGATCAAGGATAACCTGCTGTTAGACATGTACCTGGCCCCCCACGTACTGACCCTCTACACACTGATCAGGAACAGAGCCCTTATACAGtacTTCAGCCCGTACGTGTCTGCAGACATGACTAAGATGGCCCAGGCCTTCAACACCACGGTGCTAGCTCTGGAAGACGAACTCACCCAGCTCATACTGGAGGGACTTATCAATGCACGCATAGACTCCCATAGCAAGATCCTGTATGCGCGTGACGTGGACCAGCGGAGCCACACATTTGAGAAGTCTATCCACATGGGCAAGGAGTTCCAGAGGCGAGCCAAAGCCATGATCTTGCGAGCTGCTGTGCTGCGCAACCAGATACACGTCAAGtctcctccCAGGGAGGGCAGCCAAGGTGAACTCAACTCTGCCAACAGCCAATCACgaatgagcaccaacatgtgaacaTTCCCATGAGACCTCTGTCTTACAGGAAGTTACcatgtcagggggggggggggggtctgccaGGGGGAcctagcacccccccccccccccccccccccccccccatctgaggATCCCCCTCCTCCTGCTGACTCAGTGCTGCATCTTTTGCCTGCAGAAAGAAAAATACTGAGACGTCAACTTCAATAGGCTGTGTCTTAAATGGTgcccctattcactatatagtgcaccacttttgaccagggcctatagagctctggtcaactagtgcacgatatagggaataagggagccattttggatgcacaAAGGACTCTGGTCATGTGGGAAGTGAACAGTGGTAGTCTGTGGAGATACTTGATGAGCAACCTGAGTGTGTTAATGTTGTATtggagaggctgtgtgtgtgagtgtttagaGTTGAGTGGCGCTCAGTCGCGTCACAGTACTGTCCTCTTTTTCCTAAGATGcacttttctctttctttcttttctttctcatGATTGATGTGATACATCCATTAAGAAATTAACAGAACACACACTTCAGAACCAATGTCCACAAGATCtgattttaaaataaatgtgTATGATAATCGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1916975 lncRNA upstream 21399 23997052 ~ 23999931 (+) True G1675497
TU1916968 lncRNA upstream 41243 23979883 ~ 23980087 (+) True G1675490
TU1916967 lncRNA upstream 41704 23979411 ~ 23979626 (+) True G1675489
TU1916966 lncRNA upstream 42800 23978308 ~ 23978530 (+) True G1675488
TU1916965 lncRNA upstream 51459 23969348 ~ 23969871 (+) True G1675487
TU1917043 lncRNA downstream 53469 24082350 ~ 24083181 (+) True G1675556
TU1917083 lncRNA downstream 150068 24178949 ~ 24179418 (+) True G1675586
TU1917082 lncRNA downstream 151478 24180359 ~ 24186488 (+) True G1675585
TU1917163 lncRNA downstream 212486 24241367 ~ 24241730 (+) True G1675662
TU1918191 lncRNA downstream 375571 24404452 ~ 24404811 (+) True G1676609
XM_021576210.2 mRNA upstream 43875 23972492 ~ 23977455 (+) False LOC110499218
XM_021576209.2 mRNA upstream 43875 23972494 ~ 23977455 (+) False LOC110499218
XM_021576208.2 mRNA upstream 43875 23972498 ~ 23977455 (+) True LOC110499218
XM_021576186.2 mRNA upstream 56872 23946794 ~ 23964458 (+) False lrrc45
XM_036956059.1 mRNA downstream 117184 24146065 ~ 24169492 (+) False slc16a3
XM_036956060.1 mRNA downstream 117184 24146065 ~ 24169492 (+) False slc16a3
XM_036956058.1 mRNA downstream 117186 24146067 ~ 24169492 (+) True slc16a3
XR_005037973.1 mRNA downstream 154678 24183559 ~ 24189459 (+) True LOC118942055
XR_002469986.2 mRNA downstream 600662 24629543 ~ 24632101 (+) True LOC110499595
TU1916710 other upstream 439898 23580137 ~ 23581432 (+) False faap100
TU1916709 other upstream 439943 23580030 ~ 23581387 (+) False faap100
TU1916707 other upstream 439943 23580137 ~ 23581387 (+) False faap100
TU1916714 other upstream 439943 23580137 ~ 23581387 (+) True faap100
TU1916535 other upstream 763261 23256804 ~ 23258069 (+) False LOC110499192
TU1919058 other downstream 1053783 25082664 ~ 25083277 (+) True G1677419
TU1919386 other downstream 1607810 25636691 ~ 25641614 (+) True G1677738
TU1920693 other downstream 2433313 26462194 ~ 26467953 (+) True G1678963
TU1920824 other downstream 2603254 26632135 ~ 26633198 (+) True LOC110499256
TU1920840 other downstream 2625746 26654627 ~ 26656111 (+) True LOC110499259

Expression Profile