RNA id: XR_005037973.1


Basic Information

Item Value
RNA id XR_005037973.1
length 2222
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC118942055
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 24183559 ~ 24189459 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTCAAGTCTGTATGCTCTAACAATTAAACACATTTGAACAAATTGTACTTCAATTGTACTTCAAACTATATGAACTCAACATAGTTCTATTGGTGTCAGAATGTTTTAATGTTTCAATATTTTCTAGAGGCTTAATgaagaggcaggcagcctaggaGAGATAAAGATGTTCTAGGCCTGGTTATACAATCCAGCTAGGGTGTCAAAAGGAAACAACCACGCCATATCCTTAGTGGTTTGGAGCAGTGGTGTGTGGGGTGGGCTGGATTACCTTTTTACAGGTTTACTCTTCTAAAAACATCTACTCAGCCCTACACGATTCATGTCTGTTGAGTTGGAACATTGAACTTCAATGGAGTTGGACATGCGGTTTCTCATCTGCATACTCGACTTGGCCTCGATTGGTTGACCCGTCATCATATGTTGGTTGTTTGTTGTTCTTAAAGAGCTTTGAGATTCTATGAAAAGCACTATAGAAGTTTAATGACTTATACATGTGCAACATAATTCATATATCGACCATAACTGCAGCCATGTAAGAACATAGAAATCATCGACTTTTCCCAGTCAGTGTCTCTGAACCCGAAAATGCACAAACAGTGCATTTAACAACTCAAAGACGGGAATAACATTTGCCACAAAATGTTTCCAGTCAGTATCCAAATGACCCAACCCTTTCAAAACAAAACATCCAACAACAAGCAACTGAGAAGCAAGTCAAGCAGCCTTTTGGCCTTACATGGGGTTTAGAACTATTTGTTTAGAAAAGGGGAAGAGGTGGCGGGATGGGGTTTGGAGCTGTGACTCGTGACAGgctagtacagacagacaggacatagTAGGGCAGTAGTAGGCATTAAACATCTGACAGACGGTTTGTGAAACAATGACATGGCTGTTAGAAACTTTGCAGATGTCATCCCCATCAACAATAAGCTCTTTCTGCTGTATACACTAACTGCCATGTGCTACAGTAGTGCCAAGAAGCTGGACAATTGTGTTGAACCCTGTAGCTGGACAAGATGTGCTCCTGCTTCAACTCAACCAGAGGAATTCCTACAGTCACCTGAAAACGCATACAATGAGGATAGGACATACACCAAATTCAGAAACTCTGAGGCCCTGTAAAAACCCATTTAGCATTTAACATAGGAATACTCCTCCCTATCACGCATAGGAAAACATGACTCCACGAAGCATAGCAGGATTATGACAACAGTTACAGTTACGGCATGACAAGATTCAAACTCACTCATACAAAAACAAGACATGTTCAGTGACCTTTATGACAAAAGTATGTGTAAGCTAAACCCTGGAGGTGATGATAACATATCAGAATGTAATTTCAGTTGACCGCTGACTGATGATTATGGACCACTGCAAAAAACAGAGGGCCCAGtctctaaacacacactaaaacgCACCACACAAGCAACAGTCAACACAACTGCTAAGGGGGAGTTGACCCCTGCCAAGACTGAGTGACAAATGGTTGAAACTAGCCACAACAATGCATTTCAGCAATGTTACCTTAAACCAGCCAGAAATACTGTCATTGATAGTAGCTTGACTAAATTCTAAGACAGCCACAGCAGCAAACAAATGGAAGCTACAGGAGAGTAAGTACACTTGTACTGTGACTATAAAATGGGTAACTAGTTCAGAACTTCACTATGCTTCATCCTAAAAATGTGGGCAAGTGCCACTGCCTGGAGGGCAGAGCAGAGAACAGGGTATTTGGCTAGCTCTACTGCAGCTAGCGAACTGCCCTTCATCCCTTGAAATTTGACAGATGGGATGTATACTGGCAAACTCAGTTGGGGTTAGGATTTTTGGGTCCCACTGGCGTGATGTCACAGTGGCTAAGGCAGGGATGTACTGTGACCTGAATTTGAGGCCAAATCAACAGAGAGGACAACAGCAGAAAGCAAACACAGGTTCCAAGACAGCTCAGGAGTGGCAtcggtacaagtctctgaatgtacttgagtggcccagccaaagtccGATCgaagatctctggagagacctgaaaatagtggtgcagcaacactccccatccaacctgacagagcttgagaggatctgcaaagaagaatgggagaaacttcccaaatacaggtgtgccaagctaatAGCATATGCAAGAATACtctatgctgtaatcgctgccaaaggtgcttccgcaaagtactgagcaaagggtctgaatacttacgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1917083 lncRNA upstream 4141 24178949 ~ 24179418 (+) True G1675586
TU1916986 lncRNA upstream 92993 24028387 ~ 24090566 (+) True LOC110499226
TU1917043 lncRNA upstream 100378 24082350 ~ 24083181 (+) True G1675556
TU1916975 lncRNA upstream 183628 23997052 ~ 23999931 (+) True G1675497
TU1916968 lncRNA upstream 203472 23979883 ~ 23980087 (+) True G1675490
TU1917163 lncRNA downstream 51908 24241367 ~ 24241730 (+) True G1675662
TU1918191 lncRNA downstream 214993 24404452 ~ 24404811 (+) True G1676609
TU1918192 lncRNA downstream 215485 24404944 ~ 24405223 (+) True G1676610
TU1918194 lncRNA downstream 218031 24407490 ~ 24409559 (+) False G1676611
TU1918197 lncRNA downstream 218031 24407490 ~ 24409559 (+) True G1676611
XM_036956059.1 mRNA upstream 14067 24146065 ~ 24169492 (+) False slc16a3
XM_036956060.1 mRNA upstream 14067 24146065 ~ 24169492 (+) False slc16a3
XM_036956058.1 mRNA upstream 14067 24146067 ~ 24169492 (+) True slc16a3
XM_021576220.2 mRNA upstream 154678 24021330 ~ 24028881 (+) False LOC110499226
XM_036956051.1 mRNA upstream 155061 24020687 ~ 24028498 (+) False LOC110499226
XR_002469986.2 mRNA downstream 440084 24629543 ~ 24632101 (+) True LOC110499595
XM_036956065.1 mRNA downstream 703471 24892930 ~ 25354425 (+) False sdk2b
XM_036956066.1 mRNA downstream 703471 24892930 ~ 25354425 (+) False sdk2b
XM_036956067.1 mRNA downstream 703471 24892930 ~ 25354425 (+) False sdk2b
XM_036956068.1 mRNA downstream 703471 24892930 ~ 25354425 (+) False sdk2b
TU1916710 other upstream 602127 23580137 ~ 23581432 (+) False faap100
TU1916709 other upstream 602172 23580030 ~ 23581387 (+) False faap100
TU1916707 other upstream 602172 23580137 ~ 23581387 (+) False faap100
TU1916714 other upstream 602172 23580137 ~ 23581387 (+) True faap100
TU1916535 other upstream 925490 23256804 ~ 23258069 (+) False LOC110499192
TU1919058 other downstream 893205 25082664 ~ 25083277 (+) True G1677419
TU1919386 other downstream 1447232 25636691 ~ 25641614 (+) True G1677738
TU1920693 other downstream 2272735 26462194 ~ 26467953 (+) True G1678963
TU1920824 other downstream 2442676 26632135 ~ 26633198 (+) True LOC110499256
TU1920840 other downstream 2465168 26654627 ~ 26656111 (+) True LOC110499259

Expression Profile