RNA id: XR_002469986.2


Basic Information

Item Value
RNA id XR_002469986.2
length 723
RNA type mRNA
GC content 0.46
exon number 4
gene id LOC110499595
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 24629543 ~ 24632101 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCAGTTGTTCAAGAGATGTCCAGTTTGCAGCCTAACATGCAGCACAGAGAAGACCAGCAAGGGGACGCTTATCAGCATTATGCAGACATGCCCTCGCTATGAGCAGTCCTGTGAATGCAACCATCAGCCACATTTTGGCAAGTATCTGGCCAGCAAGCTGTCAGCGGCCACAGCTTTCACAGGCTCATCATTTGTACAAGTACAGAAGGAGCTGATCTACACTGCTATGTCCataaatagggctctggtaaaaaaagGACTCACCACTAGCCTCACACGCCTGTTCACCAACAGTCATCGATGGGGAGAACAGAATTAGGATCTACGTGAAGGAGTGTGAGCTGGAGAGGCAGTTGTCACCTGGATGGGTGAAAAAGAAGTGGGAGAACTATAAGCAAAAATACACGGAGTTGAAAGCTCCCCCACCAGAGTCagcacagagggaggggaggctACAGCCGCATACTGGAAGTGATATGTGGTGATGGATTAGGTGCGGCAGGAGCTGCAACTCCATCACCCCACCTgtcatcttctcctctccatcccagaAGGGTCCAGATGTGGAGGAGGAAGAAGTAGGTGACTGCCAGAGAGGCACGCTTTATTGCcattttagaggccatgattaagAAGTAGTTTTATGTATTttgtatgtattttatttatagcTATTAATTTTCTACTGTTTTTGGTgaagtaattaaaaaaaaatccaaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1918470 lncRNA upstream 15857 24613062 ~ 24613686 (+) True G1676878
TU1918420 lncRNA upstream 55133 24574036 ~ 24574410 (+) True G1676831
TU1918401 lncRNA upstream 69003 24560323 ~ 24560540 (+) True G1676812
TU1918378 lncRNA upstream 83199 24546128 ~ 24546344 (+) True G1676789
TU1918370 lncRNA upstream 87611 24541673 ~ 24541932 (+) True G1676781
TU1918590 lncRNA downstream 71682 24703783 ~ 24704010 (+) True G1676993
TU1918600 lncRNA downstream 76791 24708892 ~ 24709115 (+) True G1677003
TU1918634 lncRNA downstream 98407 24730508 ~ 24730867 (+) True G1677037
TU1918689 lncRNA downstream 162275 24794376 ~ 24849004 (+) True G1677090
TU1918831 lncRNA downstream 233822 24865923 ~ 24866134 (+) True G1677229
XR_005037973.1 mRNA upstream 440084 24183559 ~ 24189459 (+) True LOC118942055
XM_036956059.1 mRNA upstream 460051 24146065 ~ 24169492 (+) False slc16a3
XM_036956060.1 mRNA upstream 460051 24146065 ~ 24169492 (+) False slc16a3
XM_036956058.1 mRNA upstream 460051 24146067 ~ 24169492 (+) True slc16a3
XM_021576220.2 mRNA upstream 600662 24021330 ~ 24028881 (+) False LOC110499226
XM_036956065.1 mRNA downstream 260829 24892930 ~ 25354425 (+) False sdk2b
XM_036956066.1 mRNA downstream 260829 24892930 ~ 25354425 (+) False sdk2b
XM_036956067.1 mRNA downstream 260829 24892930 ~ 25354425 (+) False sdk2b
XM_036956068.1 mRNA downstream 260829 24892930 ~ 25354425 (+) False sdk2b
XM_036956069.1 mRNA downstream 260829 24892930 ~ 25354425 (+) True sdk2b
TU1916710 other upstream 1048111 23580137 ~ 23581432 (+) False faap100
TU1916709 other upstream 1048156 23580030 ~ 23581387 (+) False faap100
TU1916707 other upstream 1048156 23580137 ~ 23581387 (+) False faap100
TU1916714 other upstream 1048156 23580137 ~ 23581387 (+) True faap100
TU1916535 other upstream 1371474 23256804 ~ 23258069 (+) False LOC110499192
TU1919058 other downstream 450563 25082664 ~ 25083277 (+) True G1677419
TU1919386 other downstream 1004590 25636691 ~ 25641614 (+) True G1677738
TU1920693 other downstream 1830093 26462194 ~ 26467953 (+) True G1678963
TU1920824 other downstream 2000034 26632135 ~ 26633198 (+) True LOC110499256
TU1920840 other downstream 2022526 26654627 ~ 26656111 (+) True LOC110499259

Expression Profile