RNA id: XM_036956066.1


Basic Information

Item Value
RNA id XM_036956066.1
length 10330
RNA type mRNA
GC content 0.52
exon number 46
gene id sdk2b
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 24892930 ~ 25354425 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGACCGATAGACAGTTTTATGATTCGCAAAAGGAACTGTGGACGCTGCCTTCAAAGCACACAGACAAACCGTGCTCCTCCGCCTCCGAAGACATCGATGATAGCGTTATTATTTAACatttctctcccactccccttttCCCTATACTTCCCACGAAATGTACCACTACCACTGAGTGAATAGATTCGTTTTCACCAAGGGAATTCCCGGACCTGACGCGGGAATCGTCTTTGGAAACTTTTGCGACTCATTCCGGGCTGGTATTGCTCAAGCACATAACGGATTCAGGGAGCTAAACTCATCTCTCCAGCACTCTCCCTTCTTCAATAGCTACGACCAGAGATAATCATCCATCCTGACCATCACCAGAAGAGGATACACTTTATGAACATTTTTTATGGAAACGGGACAAGTATTGCTGTTGAAATAGTTGTCTATATTGGTATTTTATGATGTATACTTGCTCCCGATGCAGGTGCTGTGAGAATTGAATGGTTTATCATTGAACTTTGCTCGGCAATCTGAAACGGATTTTTATCAAAGGAACCCAGAAAGGGTCAGGCTGTTTTGTTGCCATTCGTagcctaaatttaaaaaaaaaataggtctGCCTCCTTGCAATACAGACTGAAAGCCACGATTGCTAGTGTCTGCTACAATTGAGTTAAAACACAATAGCTCTGTATCCTGCAGTCAACATGGACTCTGCTCCTATTTTTATCCAAAAGGTTACAGTTTAAAGGACACATACTCCTTTTATTGACCGCGGTATTGCATAAGCCTATCGATAATTGCATTAATGGGTTTATGTTAGTTGGAATTTACTCATATTATTTCAGTCCTGTGTGTGACTGTACAAACTTTCAATTGATCTGCTCCACATACCGTTCCTTCTGAGCAGTTGGCATTTGTTTGATCGCGCGGTCTCGCTTGAGCGCCCTGAGACCCGGAGATTGCCCGGTTTCAGCGACAACAACGTTCACAGAGCGGACAGTTGCAAGATCCACACAGACAACTCAACACAGACACGATAACTCCGGGACGACTTGGTCAGCGGCACAACATCTATTCAGCGTGCCGGACACACGCTGTTTATTTAGCCCGGCTGTGGACAATGGCTGGAGTTTCGCCTGGACTGAGGTGGCGCGCCTCATGGATTTTATTGTTTTCCCTGTTTATCCACTACACAACAGCTCAAGatgatgtGCCGCCCTACTTTAAGACGGAGCCGGTGCGGAGCCAGTTGCACCTGGAGCGTAACAGGCTGGTGTTGACATGTATGGCGGAGGGGAGCTGGCCCCTGGAGTTCAAATGGATCCATAATGGCACTGAGCTCACACGGTTCTCATTGGAGTACAGGTACCTGATTCCCTCCCTGGACCGTTCCCATGCTGGCTTCTACCGATGTATCGTCAGGAACCGTGTAGGAGCCTTACTACAGAGGAGGACTGAAGTACAGGTGGCATTCATGGGCAGTTTTGAAGAGGGTGAGCGTGCCCAGTCGGTCTCTCAGGGGGAGGGGGCGGTTGTTCCCGCTCCACGCATCAGGAGCTTTCCCCAGCCGCAGGTCACATGGTTCAGAGACGGACGCAAGATTCCGCCCAGCAGCCGCATAGCCATTACCCTGGACAACACTCTGGTCATCCTGTCCACGGTGGCCCCTGATGCTGGACGCTACTATGTACAGGCGGTCAACGACAAGAACGGGGAAAACAAGACCAGCCAACCCATCACCCTGTCTGTTGACAatgtggGTGGTCCTGCAGACCCTATCGCCCCCACCATAATCATCCCCCCCAGGAACACCAGTGTAGTGTCAGGCACGTCTGAAGTCACCATGGAGTGTGTCGCCAACGCCAGACCCCTGATCAAACTCAGCATcacatggaggaagaacagggTTCTTGTCACCAGTGGTCTGAGTGACTTCAACCGCAGACTGACCATTATCAGCCCTGTGGTCAGTGACTCAGGGTTCTATGAGTGTGAGGTGGTCCTCCGCAGCAGCAGTGTGCCTTCTGTCAACGCTGGGGCCTTCCTACATGTTCAAGagcCCCCCCAGTTTGTGAAGGAACCAGAGAAACACATTACTGCCGAGATGGAGAAAGTGGTGGATATCCCCTGCCAGGCACGAGGTGTGCCTCAGCCAGACATTGTGTGGTATAAGGATGCGGTGCCCATCAGTCCGGTGAAGACCCCGAGGTACAGGGTGTTGGTGGGAGGCAGTCTGCAGGTCAACGGCCTTCTGCCCGACGACACAGGAATGTTCCAGTGTTTCGCCCGGAATCTAGCTGGAGAGGTGCAGACCAACACCTACCTGGCTGTCACTAGCATCGCCCCTAACATCACAGCTGGGCCATCCGACAGTACAGTGATTGATGGCATGTCAATCATCCTCCACTGTGAAACATCAGGAGCTCCCAGACCGGCCATCACCTGGCAGAAAGgTGAGCGTGTCCTGGCCAGTGGTTCTGTCCAGCTGCCCAGGTTCACCCTGCTGGAGTCAGGCAGCCtgctcatctctccctcccacttATCAGATGCTGGCACCTATACCTGCATGGCCAGCAACTCCCGGGGCATAGACGAGGCTGCTGCTGACCTGTTGGTgtgggctCGTACACGTATCAACACTCCCCCTCAGGACCAGAGTGTCATCAAAGGCACCAAGGCCACCATGACCTGTGGAGTTACACACGACCCCAGTGTCACCGTTAGgtatgtatggGAGAAGGAGGGCTCGGTCATCAACGCCCAGTCTATCCCCCGTATCCGGCTGGACTCTGATGGTACCCTTCACATCTCCCAGACCTGGTCAGGTGACATCGGGACCTACACCTGCAGGGTCACCTCTGTAGGGGGCAACGACTCACGCAGCGCACACCTCCGAGTCAGGCAGCTGCCCTATGCCCCAGAGAACCCTGTGTCTCTGCTGAGCTCCTCAGAGAAGAGGGCCATCAACCTGACATGGGCCAAACCCTTTGACGGGAACAGCCCCCTAATCCACTACGTCCTGGAGGTCTCCGAGAACAACGCTCCCTGGGCTATCCTCCTGGCCAACATAGAGCCTGAGTCGACCGCGGTGACAGTCAGTGGGCTCATCCCAGCACGCTCCTACCAGTTCCGCCTGTGTGCCGTCAATGACGTGGGAAAGGGACAGTTCAGCAAGGAGACTGACCGTGTATCTCTACCAGAGGAACCTCCCAGTGCTCCTCCCCAGAACGTGATCGCCAGCGGCCGCACCAACCAGTCCATCATGATCCAATGGCAGCCCCCACCAGAGAGCCACCAGAACGGGATCCTCAGAGGCTACAGCGTCCGgtACCGTCTGACAGGTCTTCCAGTGGACTACCAGAGTAAGAACATCTCCAAACCAGACGTGACCAACCTTCTCCTGGAAGATCTTATCATCTGGACCAATTATGAGATCGAAGTGGCAGCCTACAACTGGGCGGGGCTAGGAACCTTCAGCCACAAGGTCACTGAGTGGACGTTGCAAGGAGTGCCGACTATAGCCCCCAGTAACGTTCAGGCAGAGGCTGTCAACTCCACAACCATCCGTATCACCTGGGCCGCCCCTAACCCTCAGTTCATCAACGGGATCAACCAGGGATACAAGCTGTTGGCATGGGAGCCAGGTCAGGAAGAGGAGGTCACCATGGTTACAGTGAGACCTAACTTCCAGGATAGCGTGCATGTGGGCTACGTGATAGGGCTGAAGAAGTTCAGAGAGTACTACACCTCTGTGCTTTGTTTCACTACACCAGGGGATGGCCCCCGCAGCCCTGCTAAAGGCCTTAGGACACATGAAGACACTCCTGGGGCTGTGGGTCACCTGAGCTTCACAGATATCCTAGACACCTCTCTCAAAGTGAGCTGGAGAGAACCTGGAGAGAAGAATGGAGTCCTCACAGGCTACCGTATCTCGTGGGAGGAGTTTAACCGCACCAACACACGGGTGACCCACTACCTCCCCAACGTGACCCTGGAGTACCGCGTCACAGGGCTGACCGCCCTCACCACCTATACCATCGAGGTGGCCGGCATGACCTCCAAGGGTCAGGGACAACTgtcctcctccaccatctcttCTGGAGTACCTCCAGagcTGCCGGGTCCTCCCACCAACATGGCCATCTCCAACATCGGCCCTCGATCCATCACCCTCCAGTTCAAACCTGGCTATGATGGAAAGACCTCCATCTCTCGCTGGCAGGTAGAGGCCCAGgTCAGTGTGATAGGAGACAATGAAGACTGGGTGATTGTTCACCAGCTGCCCAACGAGCCTGATGCCCGCTCCATGGAGGTGCCAGGACTCAACCCATACACTTTCTACAGGTTCCGTATGCGTCAGGTAAACATTGTGGGGACCAGTCCTCCAAGTCAGCCCTCCAGAAAGATCCAGACCTTGCAGGCCCCTCCAGACATGTCCCCCGCAAACGTCACCCTGCGCACGGCCAGCGAGACCAGTCTGTGGCTTCGATGGGTGCCCCTACCAGAGTGGGAGTACAATGGGAACCCAGATCTGTTGGGTTACCGGCTCCAATACTCCCGTACAGGCTCCCAGGGTAAGGCACTGACCCATGTGATAGCTGACCGGCTGGAGAGGGAGTTCACTATCGAGGACCTGGAGGAGTGGACAGAGTATGAGGTCAGGGTTCAGGCTCTCAACGGTATCGGGGCCGGGCCCTGGAGCCAGCCAGTCAGAGGGAGGACCAGGGAGTCTGTCCCCTCCTGTGGCCCTACCAACATGTCAGCCTTCGCCACCACCTCCAGCAGTATCCTGGTGCGCTGGTTTGAAGTACCAGAACAAGACCGGAATGGACTTATCTTGGGCTACAAGgtGTTGTATAAGGAGAAGGACTCCGACTCGTCCCTCCAGTTGTGGACAATAGAGGGGAACGCCAGCCACAGTGTCCAGCTGACTGGTCTGGGGAAATACGTCCTTTATGAGATCCAGGTCCTGGCCTTCACCCGCATCGGAGACGGCGTCCCCAGCTCGCCACTCATACTGGAGAGGACCCTGGACGACGTGCCCGGTCCTCCAGTGGGCATCCTGTTCCCTGAGGTCCGGACCACCTCGTTGCGTCTCATCTGGCAGTCCCCGTCTCAGCCAAACGGCATTATCCTGGcctatCAGATCACGTATCGTTTGAACTCGAGCAACAGCAACACGGCCACAGTGGACGTGCTGAACCCGAGTGCTCGTCAGTACATGGTGACGGGTCTGAAAAAAGATTCCATGTATGTGTTCCGCATCACAGCCCAGACACGCAAGGGCTGGGGAGAGGCCTCAGAGGCACTGGTGGTCACCACCGAGAAGAGAGctcgcCCCCAGCCCACCAATCGTCCCATGGTGCCCCAGAAGGATGTTCAGGCCCGCAGTGTGTTGTTGTCATGGGAACCAGGCAGTGATGGCCTCTCTCCGGTCCGCTACTACACCGTGCAGCTGAGAGAACTGCCCGACAGCAACTGGACTATCCACTCTGCCTCGGTCACCCACGAGGCCAGCTCCTACATAGTTGGCAGGCTGAAGCCCTTCACCTCCTACCAGTTTAGAGTGAAAGCCACCAATGACATAGGAGACAGTGAATACAGCGAGGAGAGTGAAGCTATCACGACACTACAGGATGCCCCTGACGAAGCCCCCACAATCCTCTCTGTCACGCCACACACAACTACATCCGTGCTGATTCGCTGGCAGCCTCCGTCTGAGGAGAAGATTAACGGTATCCTCCTGGGCTTCCGGATACGGTACCGGGAGCTCCTGTACGACCGTCTCCGCAGTTTCTCCGTACTCACTGCCAACAGCCCCTCTGCTACCTGGGCCGAGCTCACCTCCCCCTACAGCGTACGAAACCTGAGCGAGTCCTCTCTCACCCAGTATGAGCTGGATAACCTGAGCAAACACAAGCGCTATGAGATCAGGATGAGTGTTTATAATGTCATGGGGGAGGGACCAACTAGCACACCACAGGAAGTGTTTGTCGGAGAGGCAGTACCCACTGCCCCACCCCAGAACGTGGCCATCCAAACAGCAACGGCCACCCAGCTGGATGTGACGTGGGAGTCTCCTCCATTGGACACTCAGAACGGAGACATCCAGGGCTACAAGgtgtACTTCTGGGAGCTCCAGCGTAAGAACGAGACAGAAAGGCTGCGGACCCTGTTCTTGCCAGAGGGAGGGGTCAAGCTGAAGAACCTGACTGGATACACCACCTACATGATAAGTGTGGCCCCCTTCAACGCAGCTGGGGACGGGCCCCGGAGCCCCCCGACCAGGGGCCGCACACAGCAGGCTGCCCCCAGTGCTCCCAGCTTCATCCACTTCAGTGAGCTGACCACTACTTCAGTCAACGTGTCCTGGGGTGAGCCCACCTACCCCAACGGCATCCTGGAGGGCTACCGGCTGGTCTACGAGCCCTGCACCCCTGTGGACGAGTCTACCGTGGCCTGTGCCGACTGTCttcactccccctcccccccaggcGTCAGTAAGATAGTGACGGTGGACGTCAAAGGGGCCCCGTTCTGGATGAAGATCAAGGATCTGGCTGACGGGGTGACCTACAACTTCAGGATCCGGGCCAAGACGTTCACCTATGGGCCTGAGGTGGAGGCTAACATCACCATGGGGCCTGGGGAAGGAGCCCCCGGCCCCCCTGGAGAGCCCTTCATCTCTCGCTACGGCTCAGCTCTGACCATCCACTGGGCTAACGGTGACCCCGGGAGGTCGCCTATCACACGCTACGTCATCGAGGCTAGACCCTCAGATGAAGGCTTGTGGGATATCTTGATCAAGGACATCCCAAAGGAAGTGACGTCATACACCTTCAACATGGACATTCTGAAGCAAGGGGTTAGTTATGACTTCCGGGTCATTGGTGTGAACGACTACGGCTACGGATCTCCTAGTCCACCCTCAGCCTCCATATCTGCCAAAAAGGTAGCACCGTTCTATGAGGAGTGGTGGTTCCTTGTGGTGGTGGCTCTCGTGGGACTCATCTTCATCCTTCTACTGGTCTTCATCCTTATCATCAGAGGACAGAGCAAGAAGTACGCCAAGAAGTCTGAATCAGTGTCTCCCTATGTGTGTTCATCAGGGAACAACTCTAACTGTAATGCCCTGACCCATGGAGATATGGTCAGCCTGGACGAGGGACGCTTCCCCGCCCTCGAACTCAACAACCGCCGGCTGTCCGTCAAGAACTCTTTCTGCCGTAAGAACGGCGTCTACACCAGGTCTCCTCCTCGGCCCAGCCCAGGCAGTCTAAACTACTCTGATGAGGATTTAAGCACCACCAAGTACAACGATCTGATCCCAGCTGAGACCAGCAGCCTGACCGAGAAACCATCTGAGATATCAGACTCTCAGGAGGCCCTCGTGTTCTCGTATGGGACGGGTGGTCTGCGTGTGCTTCCACTGAATTGGggCAGTGACAGTGAGTATGAGGTGGACCAGAACAGACAGAAGACCCACTCTTTCGTGAGCCACTACATCAGTGACCCAACCTACTACAACTCCTGGCGCCGCCAACAGAAAGGCATTTCCAGGGCTCAAGCCTACAGCTACACTGAGTCAGAGTCGGGCGACCCAGAGCCCTGCGCCCCGCCACCACCCCTGCCCCCATTGCCACCCCAGctcacctccaccacccctccgCTTAAGCTCCAGACCCAGGGTCAAGCCCAGGGCCAACCCCAGGGCCTCCCACCCCAGGGCCAAGGTAGTCTCTTCAGGCCTAAAGGCAGCCGGACTCCCACCCCCTCTCAGCagctctccacctccaccccctccagccaTTCCAACACCCTGTCCTACTGGCCCCCCAGCAGCCCCAGCCCCGCCCCTGGATCTCGGGCCCCAATTGCCGGGTTCTCTTCCTTCGTTTGATGCAAAGAGAGGGATCCGTGCTCCCTTCTGAAAACAAAGCCCACCCCGCCGCCCAATGTGTGTTTGTTTAGAGagtaaacacaaaacacacaacaaacaAACCCTCAAAGTCTATCATTTTCATTTTGGTTTCTGTCATGGCTGGTGTTATTCAAAACAATTCTTGCTTGTATttctattttctttttattgCTGAGTTATGTTTTAACGAACATACTGTATACAGACAGGACAGAAGTTACATACTTTCTTTCAGTACTTTTTTCCTCTTGTGTGCGTGTGCTGGTAtagttttattttcattttttaatcACGACAGCTACTGAGACAGCTCCTTAGAACATGATAGTATCTATTCGCTTTTCTGTTAGTGTTGCTGCTTGATCAAGTTGcatgagtttaaaaaaatatattatttatttttatttttcattgtTACACTTCTACACACATTCAACAAGAGAATAATCTAGTTAGGTTCTGTAAAAAGTCAAGATATTCTTGTAAAAAAATATCTAGAAGACGATAAAAGTGTCATGGCGTCGATCCACACTCGGATAACAAGCACCAAGTGGGATCCCAAAATGGAGCCATACTAGCGAATTTGAATGATAGAGAGAGGCACAGGGTATAGAAAGGACAAAGTGATGAAAGTGAAAAACGAGGAGATGGGAAATTGAGGCTGAAATGAGCCCACCATTATTCTGGCGGTTTTGAGATGCCGGGGCCTGTCCAATTTGGCCAAAGGAAGTTTCTGTCTTCATGTGAGACATGTTAGTGACCTCTGCCCAAAGATCTATGGACCACGACCCTCCTTGGAATCAGCTCTCTGGCGTGGCATAGCCTATAGCGCATGCACAATTGAGTCTGACAGCATTTCGATGTCACAGGCAAGTCAcatctctgtgcctctgtgctgTACGTACTATACAAGGGCCGGTCACCtggccagggaggagatgggaaaGGAAGTGAAATGTACTATATGTCTAAAGAGAAAATGTTCAGGTTGGTCTTCAAGTTTTGTTTTTCAATGTCCTTTAGTGTATCAGACATGCATTGATTGATTATAACTAGGGATTAATATTTTCCGTAAAATCTACCACTTTTCCTTCCCGACAAAATTACAAGCCCTTCCCGGGAATCCTGTTATTCCCGTTCAAACCAGAAATGCTATTTTAAAGCATATATTACCAGCAAAAAAAATCTGACGGAGTTATACCACTGTAAATGGATAAATATACACAGGAATCTAACAGTTACTTGTTGTATTTGTCGCAATTAAACAAGTTCTCAGTCAATACACtatgtatgtgaaccctttggaatgacctggatttctgcataaattggtcttaacatttgatctgatcttcatctaaatcacaacaatagacaaacacagcctgcttaaactaataacacacaaacaattacttGTGTTCATgcctttattgaacacaccgtgtaaacattcaaaTCCTTTGGCAACAATAAAcccaaccaaacgttttctgtagttgcggatcagacctgcacaacggtcagaaGACATcttggaccattcctcttcacaaaactgtttcagttcagcaatattcttgggatgtctggtgtgaaccgctctcttgaggtcatgccacatcatctcaatcaggttgaggtcaggactctgactgtgCCACTCCAGAAGGCTTATTTTcctctgttgaagccattctgttgttgatttacttctgtgttttgggtcgttgtcctgttgcatcacccaacttatgttgagcttcaattggcggacaaaTAGCCTTACaatctcctgcaaaatgtcttgataaacttgggaattcatttttctgttgaTGATAGCAAGTTGTCCAGgctctgaggcagcaaagcagccccaaaccctgatgctccctccaccatactttacagttgggatgaggttttgatgttggtgtgctgtgcctttttttctccacacatagttttgtgtgttccttccaaacaactcaactttagtttcttatgtccacagaatattttgccagtagcgctgtggaacatctaggtgctcttttgcgaacttcagacgttcagcaatgtttttttttggacagcagtggcttgtttcgtggtgtcctcccatgaacacatTCTTGTTTGGTGTTATAtgtattgtagactcgtcaacagagatgttagcatgttccagagacttctgtaagtctttagctgacactagaattattcttaacctcattgagcattctgcgctgtgctcttgcagtcatatTTGCAGGACGGCTACtcatagggagagtagcaacaatgcggaactttctccatttatagacaatttgtcttaccgtgaacTGATGAAcgtcaaggcttttagagatacttttgcaaccctttccagctttatgtaagtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1918835 lncRNA upstream 21733 24870971 ~ 24871197 (+) True G1677233
TU1918831 lncRNA upstream 26796 24865923 ~ 24866134 (+) True G1677229
TU1918689 lncRNA upstream 43926 24794376 ~ 24849004 (+) True G1677090
TU1918634 lncRNA upstream 162063 24730508 ~ 24730867 (+) True G1677037
TU1918600 lncRNA upstream 183815 24708892 ~ 24709115 (+) True G1677003
TU1919259 lncRNA downstream 90353 25444778 ~ 25445135 (+) True G1677614
TU1919261 lncRNA downstream 93330 25447755 ~ 25448030 (+) True G1677616
TU1919267 lncRNA downstream 101783 25456208 ~ 25456473 (+) True G1677622
TU1919295 lncRNA downstream 147443 25501868 ~ 25502129 (+) True G1677649
TU1919368 lncRNA downstream 244017 25598442 ~ 25598744 (+) True G1677722
XR_002469986.2 mRNA upstream 260829 24629543 ~ 24632101 (+) True LOC110499595
XR_005037973.1 mRNA upstream 703471 24183559 ~ 24189459 (+) True LOC118942055
XM_036956059.1 mRNA upstream 723438 24146065 ~ 24169492 (+) False slc16a3
XM_021576247.2 mRNA downstream 10390 25364815 ~ 25392592 (+) True cdc42ep4b
XM_021576254.2 mRNA downstream 648847 26003272 ~ 26050911 (+) True si:ch211-216b21.2
XM_021576255.2 mRNA downstream 875720 26230145 ~ 26235558 (+) False LOC110499247
XM_036956072.1 mRNA downstream 875720 26230145 ~ 26235558 (+) False LOC110499247
XM_021576257.2 mRNA downstream 875721 26230146 ~ 26235558 (+) True LOC110499247
TU1916710 other upstream 1311498 23580137 ~ 23581432 (+) False faap100
TU1916709 other upstream 1311543 23580030 ~ 23581387 (+) False faap100
TU1916707 other upstream 1311543 23580137 ~ 23581387 (+) False faap100
TU1916714 other upstream 1311543 23580137 ~ 23581387 (+) True faap100
TU1916535 other upstream 1634861 23256804 ~ 23258069 (+) False LOC110499192
TU1919386 other downstream 282266 25636691 ~ 25641614 (+) True G1677738
TU1920693 other downstream 1107769 26462194 ~ 26467953 (+) True G1678963
TU1920824 other downstream 1277710 26632135 ~ 26633198 (+) True LOC110499256
TU1920840 other downstream 1300202 26654627 ~ 26656111 (+) True LOC110499259
TU1920883 other downstream 1345967 26700392 ~ 26775680 (+) True G1679135

Expression Profile