RNA id: XM_021576247.2


Basic Information

Item Value
RNA id XM_021576247.2
length 4880
RNA type mRNA
GC content 0.45
exon number 2
gene id cdc42ep4b
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 25364815 ~ 25392592 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAGAGGTGGTGCTCAGAGAAAGGAGTGGGAAGGACTGTTTTGTGCGCCACTGCACTACAAACTTGACGGACGTACATGAGGACAGCGCACCGATAACTTATCTTGTTGCTGGGCTGGTGGGAAATTCATAACACTTTGGAGGTTGATTTTGTGGATTATCTGCACCAGACCTCAACATAGCTGTTTGCCAGACCACAATGGCTGTGTACTCCAGACACCTGGATTTCTCCTTGCCTTGACAATACAGTTTACAATTAAACGTGAGAAAGACACAAACATCTCATAATACTTAGCATCAACCAGGAGTTTCTTAGTTGaactgtttctgttcctgttgaGTATTATATCACTGAGTGACTTCATCAGACATCACCATGCCTATCCTCAAGCAGCTAACCTCGAACCAGTCCAAGCGTCGCTCCCGAGTCGACCTGACTGCAGAGATGATCAGCGCCCCTCTCGGGGACTTCAGACACACCATGCATGTGGGTCGTGGCGGAGATGCCTTTGGGGACACCTCATTCCTCAGTACCCGGTCTGGGGAGCCCCCTAAAGAACCAGCTCCAGAGGTGCAGCAGAGCTCCCCTGGACCTGTCCCCAAACCAGGCCTGCTGTCCCGAACCTTCAGGAGCAGTAAGCGCTCCCAGTCGGTGAACCGTGGCGAGAACGCGTTGGCTCCCCCTGGTGGCTCGCCAAACTTTGTGAAAAATGCCATCTCCCTGCCCTACCTCAACGACGAGGACGCGGGCAGGACGGGCGGTGGTCCCCCGATGCCCAAGAGCGTCTCCTCCAGCCCACTGAAGAAGCTGCCCGAGGTCGAAGGAATCAGAAAACCGGTCAACGGTGCCGCGGCCATGGACCTGGAGTTCGATGAGCGGAACTTCGGCGAACTGACTGACCTGCCACCGTCCCATCTTCGAGGTGGTGGGATGAAGCATGCGGAATCCATCATGTCGTTCCACATCGACCTGGGTCCCTCTATGCTGGGGGACATCCTCAGCGTCATGGAGAAGAAGGGCTGGGAGGAAGACGACCTAGGATACGAGGAGGGGAAGGGCAGCGAGGGCCGTGGGTCACCCCCCCTCAGTCCTCCCACCACGGAGGACAATGTTGAGGACCAGGTGGATCTACAGCCGCCAGTCAGGCCCCCACGCAGCACCTATCCACAGCAGAAAATCATGGCAGACCCCCCCTACACTCCTCCCAGGAACTACcacagccacctggacagctgctCTTTTTCCTCTTCCGGCTCCGCCGCTCTTGAGGAGAAACCACTCCACCACCTGCAGGAGGGGGACACGGACAGCGCCAAGTACAGCTCTCCAGGTGTTGGGGGGGAGGATGACAAAGATTTCTCCTTTATGGACGAGGACGAAGATGAAATCAGGGTGTgaaacagaacagggctgtaacaCCACCGACACAGAACGTGATTTATAAAGACACCAGAACATGGTTTACGAGGACACGGATGGAGACTAGTATTCTTCATGAGTTTTGAAGCTAGTACAAGCCTGGGAGGGAAGGGTTGGTGCACCTACATTTTTACATATGGATCTATCCAGAGAATCTCTAATTGCACACCTTATTCTGCTTTACTTCCTGTATTAAGATTCAATCACTCACCATCTGTTACTGAGCCTTATtcactccagtgtgtgtgtgtgtgtgttctacagtTCATGGAAACAAAATGCCTGTCCTATGAGTCCTTTTACTCTAGCCATTACggaattccacacacacacacacacacacacacacaccgggtaTTGGTTTGAGGGTTTCCTTTTGTAGAAATACGATCTGTCATTATGATGATCTAATCCCACAGTTCCAATATGTCATCAGTGTGTTAATGCTTTAAGGGGGCACATCTCAAGGATCTCAACCCTCATATCCACTTATATCCAACATGAACATATCCCACCCACGCCCCCATTGTCTTTTCATCCAGAGGATTTCCCTTCCCTAACATTCCTTACAGTGCATTAATAAGGAAGGGAAAGCCAACCACCCAACCAGCGGTCACTGATTGTCACACTGATCGTCACATTCTTTAACAGCGGAAGTATGGAGGTTGACCGAGGGTCACTTTTGATCAAACGGCAGTCCTCCTCGAGGGAGGTGTGATGCGTTAGGTGGAGGCCGGGTCATATGATGTAATGGGATGAACGGTATGTTTCTCACACAGCTTTGGAGGGGGGAAATAAAATGAAGAACAGAAAAGTATCCCAGGGTTTAGCTAGCGTAGCCGCATAGCCTTGGGGCCTTgaattaattgtgtgtgtgttgagtgaagTGAGAATCGTGAGATGCAGTTAAAATATTGGTTTGTTAATGTTCCGTTTTTTTTCCCGTTTTTTTTTTCCCTCTACGTTTATACATTGTATGCACATACATAATTGATAAGTTGGTCTTCTAGCAGGTTCTAAATCAATGTCACAACTTGGTGGTTCATTATTCTAACCATTAGTCAGCTTTAGTGTCAACTGTTCACTTACAATGGACCAGTTTTCTAAACACGCTCTATACAGACCCAGCACACTCTGATGTCATAAATGAGGCAAAAGTTTCATTTGTTAGAAACTACTTATTGGATGTGCCCCGTTTTAAGTCACCATCATTTTGATTTATAGGGAGCTTTGTTAAAGTTAGGCTTGGATGAACTAAAGATCTCCCAAATCCTCCCTAAGGTACTATCCAACCCAGTGAGCCAATTTAGGCCTTAGCTTTGGAGTTGTTTTGTTAGGCCATGAGTCCATGACACTTTGTTAGCTCAGATCAATGGACTCAGTagaaacatagaaacacacacaacactgatCTGTCATATATCCCCTGCTAGCACTGCCAAGGTATAGCAAGATGGCTCACTCCCTAAAACACTATTGTACATAAAGAatcacttttattttattttcatgtacatttttcttctcttttttgTTTTGCTTGACTTATTATTAAGGACAAATGTACATTTTGCGAAGAAAATTTGCCCTTTTTGTTGCCGCTATCATGTCCAGTAGCACTTTTTATTGTACATATGTTTTAGAAACTGATTTTTAAAAGACAATTTTACAGGAGCAGAGAAAGTGGTTGTGAACAAGCGTGGTGACCGTGCAGTAGTAGACTGTCatgtctacagatgtaggatcttaatttgagccagtttgctacaaataatcctgcagcaacaggaaatgggaATTGCATTAGGAAATGTGGATTATAGTTCATCtacatttttgtaagggttgaATCATTTTTCATAAgggtaaatcaagtctgacatttcaaagtggaaattaaacttcaaagcctttttaaaccttgaatacactacaactTTTACATgttctgcaacagggtgatctaATTAAGATACTATATCTGTATGTGGTCATCTCTTGCCCCACACATACCACAGGCTTGTAGGATCAGCAGGTTAGGAGCAAGAGGAGAGACGTCTGAAGGGAGGAGGATATAAGTAATAAGAGAACACTAGTGACAAGTGACTGTTACCCACCTCTCTCCATTGCGCCATGCAGGCCTGGGCTACTGTAGGAGAAGATTGAATCAACACCATCTGGCTTCGCTCCACCCTCTCATTCATAAACATATTTGGCTGATTGGTCGGTAACTGACCCAACGACTCATCCATTCATGAGTCACATGTCTGGGAAAGGACAGGTGCACCTGTTTAGTTTCTCCTACagttgtgcatcccaaatggcaccctattccctatatagagcactacttttgaccaaggcccatataGCAAATAGGGTTCCTTTTGAGATGCATGCAGTGTGACTAGGTCCCTACCCCTCACTCACATTCATTAATTTGGTCAGATTATGATCTCATCTGTTATggtaaaacaggaagtacctgctCAATCCTTCCTGGATCCCTGAGTAATCTATTGCCTTTATGCCTGTGAAAGGAAATTATATTTGTGACACTGGGGGAGCACTGTTCTTGTTTCCTGTTATGGCGTTGGTTGGGCGAGGGAGGGGGGGCACACATTATCCTATGGTGTTGAAGTGAGGGTAGGGACAATTCCAGGATGTGACATCACTCAGCCATGCGTTCATGCTATGTATGTCAGTTCCATGTGTACATGTCTGTATTAAAGAGATCAGTCAAGTTCATTGATTTAAAATGACCAGATGTAAATGTGCCAATTATGTAATAGTCAACCTTTTTGACATTTTGATTTTTGAATGACACATTTACAGGCTACAGCAGTATAGGCTACTTACGATAATTCTCAGGCCTCTCGCGCTGTTAATTTGTAAATGGGTCAAATTTGGGATTGCTTTGTTATTTGAAACTCTGTTGCTTGTTCCATTTGTTGTAGAATTTGTCCATGGAAAGTGGGTTGAGCTGCTGTAATCTCTTATCTGTTCTTACCCAATATGGGGATATTTTCATCTGTCAAAACACTCCTTCCTATTCACCACCATGTTATTTGCTGCTGATGAGAAGTAGTTAAATACTAATTGTATCATCTATGACAAATGGTGACTATTGCTATGTTTCGTTATAGGCATTATGGCATAGTGACGCTAATGTAAGAGCCATCAGAAGGTAACGTGGCTTTCAACTGCAAGCGGATTTCAGTGTCCTGGCCTGATGCCTGTGGTAAAAAGGGGAAAGGATTGTTCTTTTTCAGTCTCAGCTGTAGaatgttacattttattttcctTCTGTGGCTACAGTTTTTATGCCAAGTATGTGCTATTTTTCTTCTTTCTCTCGTTCTACtgtatattaatatatatttacCTCCCTCACTCTTCCTCTTCTGAAATAACAGCTATATTTTTCAATAAAAAGAGAAAGCTGGTAATCTTTACCAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1919172 lncRNA upstream 89747 25266349 ~ 25275068 (+) True G1677531
TU1919127 lncRNA upstream 163248 25201220 ~ 25201567 (+) True G1677487
TU1919061 lncRNA upstream 272836 25091623 ~ 25091979 (+) True G1677422
TU1919039 lncRNA upstream 301452 25061182 ~ 25063363 (+) False G1677403
TU1919038 lncRNA upstream 301452 25062763 ~ 25063363 (+) True G1677403
TU1919259 lncRNA downstream 52186 25444778 ~ 25445135 (+) True G1677614
TU1919261 lncRNA downstream 55163 25447755 ~ 25448030 (+) True G1677616
TU1919267 lncRNA downstream 63616 25456208 ~ 25456473 (+) True G1677622
TU1919295 lncRNA downstream 109276 25501868 ~ 25502129 (+) True G1677649
TU1919368 lncRNA downstream 205850 25598442 ~ 25598744 (+) True G1677722
XM_036956065.1 mRNA upstream 10390 24892930 ~ 25354425 (+) False sdk2b
XM_036956066.1 mRNA upstream 10390 24892930 ~ 25354425 (+) False sdk2b
XM_036956067.1 mRNA upstream 10390 24892930 ~ 25354425 (+) False sdk2b
XM_036956068.1 mRNA upstream 10390 24892930 ~ 25354425 (+) False sdk2b
XM_036956069.1 mRNA upstream 10390 24892930 ~ 25354425 (+) True sdk2b
XM_021576254.2 mRNA downstream 610680 26003272 ~ 26050911 (+) True si:ch211-216b21.2
XM_021576255.2 mRNA downstream 837553 26230145 ~ 26235558 (+) False LOC110499247
XM_036956072.1 mRNA downstream 837553 26230145 ~ 26235558 (+) False LOC110499247
XM_021576257.2 mRNA downstream 837554 26230146 ~ 26235558 (+) True LOC110499247
XM_021576259.2 mRNA downstream 870467 26263059 ~ 26274981 (+) False sgca
TU1919058 other upstream 281538 25082664 ~ 25083277 (+) True G1677419
TU1916710 other upstream 1783383 23580137 ~ 23581432 (+) False faap100
TU1916709 other upstream 1783428 23580030 ~ 23581387 (+) False faap100
TU1916707 other upstream 1783428 23580137 ~ 23581387 (+) False faap100
TU1916714 other upstream 1783428 23580137 ~ 23581387 (+) True faap100
TU1919386 other downstream 244099 25636691 ~ 25641614 (+) True G1677738
TU1920693 other downstream 1069602 26462194 ~ 26467953 (+) True G1678963
TU1920824 other downstream 1239543 26632135 ~ 26633198 (+) True LOC110499256
TU1920840 other downstream 1262035 26654627 ~ 26656111 (+) True LOC110499259
TU1920883 other downstream 1307800 26700392 ~ 26775680 (+) True G1679135

Expression Profile