Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_021576279.2 |
| length | 1523 |
| RNA type | mRNA |
| GC content | 0.44 |
| exon number | 6 |
| gene id | vps25 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048584.1 |
| NCBI id | CM023238.2 |
| chromosome length | 46616863 |
| location | 26733971 ~ 26737726 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0015031 | protein transport | biological_process |
| GO:0005737 | cytoplasm | cellular_component |
| id | description |
|---|---|
| K12189 | VPS25, EAP20; ESCRT-II complex subunit VPS25 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU1921432 | lncRNA | downstream | 33225 | 26697559 ~ 26700746 (-) | True | G1679645 |
| TU1921430 | lncRNA | downstream | 34854 | 26695986 ~ 26699117 (-) | True | G1679644 |
| TU1921225 | lncRNA | downstream | 75509 | 26655356 ~ 26658462 (-) | True | wnk4a |
| TU1921403 | lncRNA | downstream | 95871 | 26637829 ~ 26638100 (-) | True | G1679618 |
| TU1921399 | lncRNA | downstream | 102410 | 26631284 ~ 26631561 (-) | True | G1679614 |
| TU1921479 | lncRNA | upstream | 78921 | 26816647 ~ 26816859 (-) | True | G1679689 |
| TU1921556 | lncRNA | upstream | 180793 | 26918519 ~ 26918821 (-) | True | G1679753 |
| TU1921333 | lncRNA | upstream | 221621 | 26959347 ~ 26959665 (-) | True | G1679548 |
| TU1921552 | lncRNA | upstream | 232390 | 26970116 ~ 26972456 (-) | True | G1679749 |
| TU1921582 | lncRNA | upstream | 242010 | 26979736 ~ 26980019 (-) | True | G1679777 |
| XM_036956075.1 | mRNA | downstream | 1545 | 26656017 ~ 26732426 (-) | False | wnk4a |
| XM_036956074.1 | mRNA | downstream | 1547 | 26656017 ~ 26732424 (-) | False | wnk4a |
| XM_036956076.1 | mRNA | downstream | 1547 | 26656017 ~ 26732424 (-) | False | wnk4a |
| XM_036956077.1 | mRNA | downstream | 1547 | 26656017 ~ 26732424 (-) | False | wnk4a |
| XM_021576277.2 | mRNA | downstream | 79430 | 26638783 ~ 26654541 (-) | True | cntd1 |
| XM_036956081.1 | mRNA | upstream | 2046 | 26739772 ~ 26769099 (-) | False | LOC110499261 |
| XM_036956083.1 | mRNA | upstream | 2931 | 26740657 ~ 26769098 (-) | False | LOC110499261 |
| XM_036956082.1 | mRNA | upstream | 2931 | 26740657 ~ 26769099 (-) | True | LOC110499261 |
| XM_021576286.2 | mRNA | upstream | 31771 | 26769497 ~ 26781618 (-) | False | hltf |
| XM_021576284.2 | mRNA | upstream | 31771 | 26769497 ~ 26783023 (-) | False | hltf |
| TU1921192 | other | downstream | 371690 | 26360213 ~ 26362281 (-) | True | si:ch1073-13h15.3 |
| TU1921096 | other | downstream | 524092 | 26209454 ~ 26209879 (-) | True | fbxw10 |
| TU1920175 | other | downstream | 1028847 | 25704621 ~ 25705124 (-) | True | G1678462 |
| TU1919942 | other | downstream | 1341395 | 25387881 ~ 25392576 (-) | True | G1678242 |
| TU1918605 | other | downstream | 2023473 | 24710125 ~ 24710498 (-) | True | G1677008 |
| TU1921852 | other | upstream | 307056 | 27044782 ~ 27045294 (-) | True | G1680017 |
| TU1922022 | other | upstream | 543097 | 27280823 ~ 27281608 (-) | True | G1680171 |
| TU1922313 | other | upstream | 644259 | 27381985 ~ 27384608 (-) | True | sf3b5 |
| TU1922565 | other | upstream | 1011827 | 27749553 ~ 27750430 (-) | True | LOC110499285 |
| TU1923197 | other | upstream | 1123015 | 27860741 ~ 27864828 (-) | False | fa36a |
