RNA id: TCONS_00050071


Basic Information

Item Value
RNA id TCONS_00050071
length 505
RNA type processed_transcript
GC content 0.46
exon number 3
gene id XLOC_025378
representative True

Chromosome Information

Item Value
chromosome id NC_007114.7
NCBI id CM002887.2
chromosome length 62628489
location 26288981 ~ 26319758 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCGGTAAAGGCCAAATTCTCCAGCGCTGTTCTCAACAGGTTGAGACCTTTTATACAAGATCTGGGCACATTTCTGTTGGCTGATGAGGAGTCCAGCCTCACCCATCAGGTTCATGCAGTCAGCTTTGTTGAGGACTCGGTCTTCATGGAGTCGTCTGTCGACCCGTTTGTGCCCGCTTGTAACAGACACATGACCCAAGCTGACCTGAAAAACTCTACATTTTGGCTGAGGGCGAGCGTCGGTGCCACTGTCTTTGCTGTTCTGGGCTTTGCCATGTACAAAGCTCTCCTCAAGCAGCGGTGATCagtgcaaatacaaaaaaaaaactaaacagcatgttactgcaaacCCAGACCCACGATGATCCCTCATTCCATCCTCGTTTCATTTAGGAGAAAAGATTCCTAGTAAATAGCATAGTACATTTTGTAGAGTAAAAACTGCCTTTCCCAAACCAAGTGTTACAGGAACTCTATTTGTTGGAACGGGACGGGATTTTACGAA

Function

GO:

id name namespace
GO:0097345 mitochondrial outer membrane permeabilization biological_process
GO:0007005 mitochondrion organization biological_process
GO:0047497 mitochondrion transport along microtubule biological_process
GO:0010821 regulation of mitochondrion organization biological_process
GO:0019725 cellular homeostasis biological_process
GO:0031307 integral component of mitochondrial outer membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005741 mitochondrial outer membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005525 GTP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5354 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including mitochondrial outer membrane permeabilization; mitochondrion transport along microtubule; and regulation of mitochondrion organization. Located in mitochondrion. Is expressed in fin bud; head; muscle; and somite. Orthologous to human RHOT1 (ras homolog family member T1).

Ensembl:

ensembl_id ENSDART00000167408

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00050070 lncRNA upstream 6837 26295368 ~ 26303657 (+) False XLOC_025378
TCONS_00050066 lncRNA upstream 28933 26280487 ~ 26281561 (+) True XLOC_025377
TCONS_00050064 lncRNA upstream 49513 26260528 ~ 26260981 (+) True XLOC_025376
TCONS_00050054 lncRNA upstream 163061 26144765 ~ 26147433 (+) False XLOC_025372
TCONS_00052340 lncRNA upstream 230094 26076494 ~ 26080400 (+) True XLOC_025371
TCONS_00050076 lncRNA downstream 30601 26349655 ~ 26351463 (+) True XLOC_025381
TCONS_00052676 lncRNA downstream 36240 26355294 ~ 26361798 (+) True XLOC_025382
TCONS_00052677 lncRNA downstream 92179 26411233 ~ 26416784 (+) True XLOC_025383
TCONS_00052678 lncRNA downstream 316766 26635820 ~ 26636398 (+) True XLOC_025384
TCONS_00050078 lncRNA downstream 423355 26742409 ~ 26743225 (+) True XLOC_025385
TCONS_00050068 mRNA upstream 9092 26294161 ~ 26301402 (+) False XLOC_025378
TCONS_00050065 mRNA upstream 29230 26267725 ~ 26281264 (+) False XLOC_025377
TCONS_00050062 mRNA upstream 44030 26244353 ~ 26266464 (+) False XLOC_025376
TCONS_00050063 mRNA upstream 44327 26245731 ~ 26266167 (+) False XLOC_025376
TCONS_00050061 mRNA upstream 77721 26223376 ~ 26232773 (+) True XLOC_025375
TCONS_00050072 mRNA downstream 3542 26322596 ~ 26326763 (+) True XLOC_025379
TCONS_00050073 mRNA downstream 23714 26342768 ~ 26343648 (+) True XLOC_025380
TCONS_00050074 mRNA downstream 26678 26345732 ~ 26351656 (+) False XLOC_025381
TCONS_00050075 mRNA downstream 27334 26346388 ~ 26351460 (+) False XLOC_025381
TCONS_00050077 mRNA downstream 415108 26734162 ~ 26751819 (+) False XLOC_025385
TCONS_00050060 other upstream 116035 26194344 ~ 26194459 (+) True XLOC_025374
TCONS_00050056 other upstream 158934 26144765 ~ 26151560 (+) False XLOC_025372
TCONS_00050021 other upstream 1178263 25126456 ~ 25132231 (+) True XLOC_025346
TCONS_00049977 other upstream 2172586 24134557 ~ 24137908 (+) True XLOC_025318
TCONS_00049974 other upstream 2209412 24095160 ~ 24101082 (+) True XLOC_025315
TCONS_00050085 other downstream 752719 27071773 ~ 27074132 (+) True XLOC_025389
TCONS_00050090 other downstream 1088042 27407096 ~ 27407211 (+) True XLOC_025392
TCONS_00050119 other downstream 2512464 28831518 ~ 28850434 (+) False XLOC_025404
TCONS_00050124 other downstream 2542122 28861176 ~ 28866082 (+) True XLOC_025405
TCONS_00050129 other downstream 2847966 29167020 ~ 29167147 (+) True XLOC_025410

Expression Profile

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