RNA id: XM_021576295.2


Basic Information

Item Value
RNA id XM_021576295.2
length 1965
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC110499270
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 26973150 ~ 26978647 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGCCCTTGTACCTTGTCAGAGAAAATAATCAAGAATGTATTAGGAACCCGCGGTTAAACCTAATCGGAAAAGGCTTAGGAACTTTGACACCGGAAGTGGTCACTGATGTCGCTGTTTAGAACAAGTGCATGAATCCGTGGAACCATCAGCTAGCCAAAGCTCCTTTGAATGTTATAGAGACTGGGAGAATTGCAGGCCTTTGAGACGGCCAGTCAAGTGAACGCTTCATAATTTGAGGACATGGAGCAGAACAACAGTTTGCCTCCTTTCCAGGGTCTTGCCTCCCCTCAGGGGGCAATGACTCCTGGTATGCCCATTTTCAGCCCCATGATGCCCTATGGCAGTGGTCTGACTCCCCAACCTGTCACGAACACAAACAGCTTGTCTCTCCTGGAAGAGCAGCAgcggcaacaacaacaacagcagcaggctTCGGCCCAGCAGGCTGGGGTGCCAGGGGGTTTGGGACAGACACCACAGCTTTATCACTCCCAAACagtcaccaccaccacactgccAGGAAACACTCCCCTCTACACTGCTACACCGCTAACCCCCATGACACCCATCACACCTGCCACTCCTGCCTCTGAGAGTTCTGGGATTGTCCCTCAGTTACAGAACATCGTATCCACTGTGAACTTGGGCTGCAAACTTGACTTGAAAACAATAGCACTGCGAGCTAGAAATGCTGAGTACAACCCCAAGCGATTTGCTGCTGTAATCATGAGAATACGAGAGCCAAGAACAACTGCACTTATCTTCAGTTCTGGAAAAATGGTTTGCACGGGAGCCAAAAGTGAAGAGCAGTCCCGCTTGGCGGCCAGGAAATACGCCAGAGTTGTGCAGAAGTTGGGCTTCCCAGCCAAATTTCTTGATTTCAAGATTCAGAACATGGTGGGCAGCTGTGACGTCAAATTCCCCATTCGGTTAGAGGGACTTGTACTAACTCACCAACAGTTCAGCAGTTATGAACCTGAGTTGTTCCCTGGGCTAATCTACAGAATGATCAAACCCAGAATTGTCCTGCTGATATTCGTTTCAGGCAAAGTTGTATTAACAGGTGCAAAGGTCAGAGGAGAAATTTATGAAGCATTTGAAAACATCTACCCCATCTTGAAAGGATTCAGGAAGACAACGTAAATATTTATGCCTGcaatcttttttattttatttttttaatagtcACAGGGGAACTTGCTCTGTTGTGACCCGTTACATTGGGACTCTGAACCTGTACATTTTAATCGGCAAGTCGGGGACCCCTCCTAATCACCTTAATGGTGATTTGATACTAGGGGAAATGCTGTATTTTAGcagttttatttgtttttaaatgactCTCTTGCTTGATATTAAATGAGGCAGTCTGACTGACAATTTCTTTTTATTGAAGCATTTCATTTTTCTGATGTAGGTTTTAAGATGTTATCCTATCATTTCTCAGTGCATGTTTGTCCACACAACCCTACAAGCAGACATTCAAGATTCCTAACCTTATTCTTTAAATGGTTTTTACAGTCAATTTAACTGTTATGAATAATCTCCAGATTGAATGTTACTTAGGATTGTGTTGCAAGGCTTACCAATTTGTCATTATTGCGACTATTTTTTGTACATATTCAATTTTGATAACTCTTTGCTGCTGAAGTCAAGAAAATGGTGTAACGTGGAGTGGAACATTCATCATGCAACCTTGTGCATCTGAGTTTTATTAGTAACTATGTACCTCGGATGTCTTTTCTCATTCAGTTTTTGGTCATTTTAAGTGCTATTTAAGAACAGTCATGTTTTAATGCTAAAATAGACTAATCAATTCACCGTGGATTTTGTTTCAATAGTTGATACGTACTGTATATTTGGTCTACCAACTAAGCACACGTAAGCAGTCAGTCATTGTTCttgttttaaatgttattttgcccCATTGTGCacaattaaatattcacttatccAATTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1921046 lncRNA upstream 15229 26959522 ~ 26960038 (+) True G1679285
TU1921041 lncRNA upstream 44054 26930945 ~ 26931213 (+) True G1679280
TU1921030 lncRNA upstream 56533 26918515 ~ 26918734 (+) True G1679269
TU1920988 lncRNA upstream 118285 26856672 ~ 26856982 (+) True G1679227
TU1920987 lncRNA upstream 118843 26855488 ~ 26856424 (+) True G1679226
TU1921072 lncRNA downstream 2355 26981002 ~ 26981231 (+) True G1679307
TU1921591 lncRNA downstream 16400 26995047 ~ 26996738 (+) True G1679786
TU1921622 lncRNA downstream 53605 27032252 ~ 27032520 (+) True G1679815
TU1921617 lncRNA downstream 60472 27039119 ~ 27039358 (+) True G1679810
TU1921646 lncRNA downstream 65645 27044292 ~ 27044699 (+) True G1679829
XM_036956092.1 mRNA upstream 2775 26970021 ~ 26972492 (+) True LOC110499269
XM_021576290.2 mRNA upstream 94999 26874466 ~ 26880268 (+) True dld
XM_036956086.1 mRNA upstream 173142 26795174 ~ 26802125 (+) True si:zfos-1056e6.1
XM_036956084.1 mRNA upstream 190101 26783110 ~ 26785166 (+) True LOC110498782
XM_021576278.2 mRNA upstream 319156 26654584 ~ 26656111 (+) False LOC110499259
XM_021576299.2 mRNA downstream 26758 27005405 ~ 27012611 (+) True LOC110499271
XM_021576301.2 mRNA downstream 83638 27062285 ~ 27068808 (+) True LOC110499272
XM_036956098.1 mRNA downstream 121123 27099770 ~ 27132840 (+) False LOC110499274
XM_021576306.2 mRNA downstream 132689 27111336 ~ 27132840 (+) True LOC110499274
XM_036956100.1 mRNA downstream 170746 27149393 ~ 27241856 (+) False galnt2
TU1920883 other upstream 199587 26700392 ~ 26775680 (+) True G1679135
TU1920840 other upstream 319156 26654627 ~ 26656111 (+) True LOC110499259
TU1920824 other upstream 342069 26632135 ~ 26633198 (+) True LOC110499256
TU1920693 other upstream 507314 26462194 ~ 26467953 (+) True G1678963
TU1919386 other upstream 1333653 25636691 ~ 25641614 (+) True G1677738
TU1921636 other downstream 105779 27084426 ~ 27087463 (+) True G1679823
TU1922082 other downstream 396707 27375354 ~ 27375819 (+) True G1680230
TU1923119 other downstream 1738714 28717361 ~ 28726495 (+) True G1681180
TU1923788 other downstream 1799359 28778006 ~ 28778409 (+) True G1681792
TU1924556 other downstream 2478581 29457228 ~ 29457921 (+) True lhcgr

Expression Profile