RNA id: XM_021576301.2


Basic Information

Item Value
RNA id XM_021576301.2
length 3182
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC110499272
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 27062285 ~ 27068808 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaagcGTTCTACGGGAAGTGAGAAGGAAAATCCAGTAGGATTCACGGCTATTAGGGATTTTTCTTCAATTAATTTCGAAGCTGCAGTGCCTCAAGAAAAACAATAGGATATTGCTAGCAAATAAAACACAACCATTGCCATGTCTGAGACATACGATTTTCTGTTCAAATTCCTAGTAATTGGGAATGCAGGAACTGGAAAATCATGTCTACTTCACCAGTTTATTGAGAAGAGATTCAAAGACGATTCGAATCACACCATTGGAGTGGAGTTTGGCTCAAAGATAATCAACGTGGTAAACAAATATGTCAAACTCCAAATCTGGGACACTGCGGGACAAGAGAGATTcagGTCTGTTACACGGAGTTACTACAGAGGCGCTGCTGGAGCCCTGCTTGTATATGACATCACCAGCCGGGAAACCTACAACGCCCTGACCAACTGGCTGACAGATGCCAGGATGCTGGCCAGCCAAAATATTGTCATAATCCTGTGTGGTAACAAGAAGGACTTGGACGCAGACCGGGAGGTCACCTTCCTGGAGGCGTCTCGCTTTGCTCAGGAAAATGAGCTTATGTTTCTGGAGACAAGTGCTCTGACAGGGGAGAATGTAGAGGAGGCCTTTGTGCAGTGTGCCAGGAAAATCCTCAACAAGATAGAGTCAGGAGAGTTGGACCCGGAGAGGATGGGATCAGGGATCCAGTACGGAGACGCCGCGCTGCGCCAGCTGCGCTCCCCTCGCAGGGGACAGGCCGAGAGCGCTCAGGAATGTGGCTGTTAGTGAACACGCTCAGTATGCCCAGGACCAAGGCAGGTTGGTGAAGACTTCGAGGAAAGATGAGATGTAGGGAACATGATACAGGGCTCATAATGGTGGAGCGACTCTTCTCTGACCTTTTATCTTCCCAACTTCTGGATGTTCCGTCAGAGACCCACAGAGAGTCCTGGATTCCTGGCCCTACTCTGGACTGCTGAGCTTGTTCCTAGGCCCCTCAGACACAGGCAGAGAGTCCTGTTTCATCTTACTCAAGCCCTTTAATCATCTGGGCTGTATTCATAAAGCCTCTCAGAGTATGATTGCTGATATGATTTGTTTTTCCTTTTTATATAATAATGAACAAGATAACAGGGAACCcaaatcctagatcagcacactAAGTCTGAGATGCTATATGATAATGACCCCTGACATCTTACTTTCACCCCTGTACTTCTGCCCTATGCTACCCATAGCATATTGCATTATGTACAGTGTTATCTGTATAAAGAACACATCATATAGTCCCTcaaagcagtggttcccaaactgtggggcgcGTCCCTGTCGGAAGGGGAGTTGCAGCGTGGGTGCAGGGTGaaaaaatgtccagatcaactagcccaagTTTTTTCAGCTAGGTTTTTTTAGCCCACTGAtattgttgtaatgtttgagtcactcagatatcACATGAACACACAAGACATGGcggaatgtgtagaattgcaggaaattagctttaaaactgccaAGAAGGGATGTGAACAGTTACTGTCATggacagtgcttgtgcccatggAAATAGACAGATGTTCCCCAGTGATGGAAGGGGGGGGAGCGGGGCTGAGtgagtttgggaaccactgcctcAAAGCATATTTTATGGACTGAATATCAGAATTTAATTATTAGCTGAAGAATAATCTATCAATTATGTAATGTTATAGTGAGAATTATCATTCAGCACTGTCTCACGCCTGCTGGTTTCATTGACCCGTTGTTTGGGTTGTTCTTTGTGTTGATATTATTAGTTGTTGTTTTTCCCTCCCTAATTGTTATGAGTCATGCTTTTTTAATTTATTCTCAATGATATAGAAGCTCTTTTTAAAATAAAGTATTCAAAATGTATGTTTGTATATTGTTCTAAGGTGATTCCTCTTTGTCATCTTTATTACTTAAGTGTGTAATATCCATTTAGAATACTTGGTAAATTGTTGTTATACCTGTAGTAACTTTCTAATAATTATTCATAGCTGTGTAATAGTATATTTATGGAGTTGTATAGGTTTTGTTATTACACAGGTGGATAAACTGGGTCACAAGCTGGCTGCACGGTGAGCTACTTCCCTTTTGACACCTTGCACCAAAGTTCATATGATTGATGACAGTCATTTAATTCAATGACCATTTTCCTAATGCAGGTCAGAGGGCTTTTCAGTGCACTTTGGCTGTGTTTAGAAAGGCAGCCCAATTcggatattttttttattattggtCATTTGacaaatcagatcagctctgaaaaagacgAATTAGTGGGaagaatatcagaattgggctgcctgtgtgaaaTGGCAGGCTCCAGAATGTTATTGTGTCTGTCTGCTTAGATTGACCGTTTGCAAGATTGCTGTGTCGTATTAATATAGTTCCTGAGACCTAAAACTAACCCAGGTTCGATGCGACTGAAGAAAATAACCTACAATGCCACCATTGTGTTGAGATGATTGACAGCAAATCCACTGATCCCCTCTCCTCAGGGTAGGACCAAGTTCTACAGTATTTTGAAGATTGATGTTTTCGATGGGGAGAAAAGGCAACGCCAGCTACAGTTCTGAAATTGCCCATCTGTCCTCCATTATGGTACTGTATGTCCTCTTCCCTCTTTTCCCGTTTGTTACATTTCAGAGTATTACAGTATGGCATTTATCTGTATTTTTGTTTAATGACACGCTCCAGCagattttattttgaagaatattTGTCATGCTGATAAATGTATGTGTATCCAGGTGAAATGCTTTTCAATCTCATTACTATAGTAGATATTTACTGGCATGTGTTTCGACAGGTAAATCAATCAAATAAGTCAAACGATTTAGTAAAAAGTAGTTTATGAATTTTTTTAAGCCTAGCACACAATGTCAAAATACTTGTACATCAAATTGCAATCTGATACCTGTATCGGCTCCGTTTGAATGTGTAAAAGCTTAAACATTTAATCATACAAAGTAGTGATTTTTTTTATCAGTTGGAGCTGGATATTTGCTCCCTCCACAGAAGTCTACCATTCATGTTGACTGTGATCCACAACTCAACTTTTTTTCTAAataatttatactgaacaaaaatataaacgcaacatgtaaagtgttggtcccatgtttcatgagctgaaatacaagATCCCAGAAAAGTTC

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07879 RAB4A, RAB4; Ras-related protein Rab-4A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1921655 lncRNA upstream 5649 27056307 ~ 27056636 (+) True G1679837
TU1921651 lncRNA upstream 11477 27047985 ~ 27050808 (+) True G1679833
TU1921649 lncRNA upstream 15725 27046323 ~ 27046560 (+) True G1679832
TU1921646 lncRNA upstream 17586 27044292 ~ 27044699 (+) True G1679829
TU1921617 lncRNA upstream 22927 27039119 ~ 27039358 (+) True G1679810
TU1921681 lncRNA downstream 24151 27092959 ~ 27093174 (+) True G1679862
TU1921713 lncRNA downstream 173703 27242511 ~ 27248194 (+) True G1679880
TU1921788 lncRNA downstream 230907 27299715 ~ 27299952 (+) True G1679954
TU1921790 lncRNA downstream 232002 27300810 ~ 27301075 (+) True G1679956
TU1921791 lncRNA downstream 232394 27301202 ~ 27301521 (+) True G1679957
XM_021576299.2 mRNA upstream 49674 27005405 ~ 27012611 (+) True LOC110499271
XM_036956094.1 mRNA upstream 83638 26973223 ~ 26978647 (+) False LOC110499270
XM_036956098.1 mRNA downstream 30962 27099770 ~ 27132840 (+) False LOC110499274
XM_021576306.2 mRNA downstream 42528 27111336 ~ 27132840 (+) True LOC110499274
XM_036956100.1 mRNA downstream 80585 27149393 ~ 27241856 (+) False galnt2
XM_036956101.1 mRNA downstream 80590 27149398 ~ 27241856 (+) True galnt2
XM_021576311.2 mRNA downstream 212036 27280844 ~ 27292092 (+) False cog2
TU1920883 other upstream 286605 26700392 ~ 26775680 (+) True G1679135
TU1920840 other upstream 406174 26654627 ~ 26656111 (+) True LOC110499259
TU1920824 other upstream 429087 26632135 ~ 26633198 (+) True LOC110499256
TU1920693 other upstream 594332 26462194 ~ 26467953 (+) True G1678963
TU1919386 other upstream 1420671 25636691 ~ 25641614 (+) True G1677738
TU1921636 other downstream 15618 27084426 ~ 27087463 (+) True G1679823
TU1922082 other downstream 306546 27375354 ~ 27375819 (+) True G1680230
TU1923119 other downstream 1648553 28717361 ~ 28726495 (+) True G1681180
TU1923788 other downstream 1709198 28778006 ~ 28778409 (+) True G1681792
TU1924556 other downstream 2388420 29457228 ~ 29457921 (+) True lhcgr

Expression Profile