RNA id: XM_036956098.1


Basic Information

Item Value
RNA id XM_036956098.1
length 5999
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC110499274
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 27099770 ~ 27132840 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctaccagtcaaaagttttagaacacctactcattgatgacagctttgcacactcttggcattttctcaaccagctacaCCTGGAGTCTGATTCACCCCCAGCACTTGCTGTTCCAGTCACAAAAATACCAGTTTGTGGACCTACTACAGAATAGACTAATTTGAACAGTGATGGTTTTCGTTCGTGGAAGAATACGGGACCATTTTGAAAGCACATGAGCATTGTACTGAGCATTTACAAAACATGGAGAGTTGGCGCCATCTTGCGGAAAGATTGAAAACAGGCACAACCATTAATGCAATCAACCAGACTGGCTGCAAGGTGGATCGCATCCTGACAAAGCCTGTGTGAAGAAGTGCTGCCTTGGTTGCTCTGTGTGTTGTCTACTTCAAAGgtagatgGATAACTCAGTTCAGTCaaagtagagggatggaggacttCCTGCCAGATGGGGAGGCACTCACCCACATTGTCATGATGACATAGAACCATTCACCAGTGAAACTGGGCTGCACAGTAAATACAGCCTGTGAAGGTGGCCCACACACTGCCTTCCTTGAGTGCAGCTACTCCACAGACCTGCTGCCTCTGCTCGTTGACCAGGGCCAGGCTTCAGACATGGCTGCCATGTACTCTGGTATTCACTTGAAGCTCAAAAACCCCAAGACACCCTGGGTGGACAAACTGAAGCTTGCCCGTTTTGCATGGATTTCATCACAGTGCTTACTTCCTAACAAAGAACAGGTACTCTTTGATTGGATAAGTCATGCATTGACAGGCTTTTACAGTAAGAAAGTGGAGTTGCCACAGGTGGTGGTGGAAGGCTTGTGGATCTACCTGGATGATATTTTGCACAGCAAAAAGCTACATAGTGTGTTGAGCCAAGGAAAAACCATCAGCCTTCGTTTGGCAGTAGCGCAAGTTATAATTGAAAGGATTCAGGAGTTTGCCTCAGGGACCTCCTCAGCGTCTGTCTCCACCGTGTTGAGCTGCTGTCAGGGCATCCTTTCTTCCTCAGTCCTCTCTGTCACATTCACCACTAAGTACGAGCTACTGGTGGAGCTGTTGGCCAAGTTGTGTACCCTGGGCTGCTCCAAGCTCAGTCAGCAGCAAGCCACAGACCCCCTGACACCCCAGGTGTTTGAGGTCCTCCTCCTTACCCTGAGTAGCTACCTCGCGGTCCAAAAGCAGCAGGCCAATGCCAACCGCGTGTTTGCCCAAGTCACAACACACCTGCTCCAGCCCCTCCTCCTGCTCAGACACCTATTGACTTCCAGGGCCTGGATGGCCGAGGATGACTCCCGTGTCCGCCAGCACCTGAGTAGGGACATCCGTGGGAAAGTGGACACCATCCTGCAGTCTGCTCTCTTCCTGCCAGACCACCTCCAGGCCTATAAGGAGGAGCTCCTCTCAAAGGAGGAGCCAGGGATGAAGAAAGGAGCAGCGGGGAAGAGCCTACTCTCCCCAGTCAACTCGATACTCTCAAAGATTTGTGCACAAGGGTACTGTGACACTGATCTCCATTTTGCGGTCAGGTCGAGTTCCCTCCCACTGCTCTTCAAATTCTCTCTGGATGCCTACTGTAAAGGAGGAGATAATAAAGTACTCTGCTTTCACATGTTAACACAGTTAATCACTGCCTTGGATTTCACAAATGAGGTGACTCTCAAAGACCTGTTTGATGGTGAAAACTGGAGCTTAGCTCTGCTGTCTTTGGAGAACCTCTTGAATTTATGCTTGACGGTAGACATTTACAATGTGGTGGCTGACAGGATAAAGTACGAGGAGGTTCAGTTGATTTTCTACAGGAAGGTGGTGAGGCTGTTGTTCGACAATGCCCAGCCCACCATATCAGCATGGTACCGCTGTCTAAAAGCCCTGCTCAGTCTCAACCACCTGATCATAGAGCCGGACCTGGACGAGCTGCTGTCGGCAGGATGGATTGATTCCGACTGCACAGAGCCACGGGTTAGGAAGGCACGCGAGGCCCtcatctcctctgttctccaGATCTACGCCAAGCTGAGGCAGCTCCCCAAGCTCTTCGAGGAGCTCCTGGCTGTCATCTGCCGCCCAGCAATGGATGAGCTCCGACAGCCCGTTCTCCCAGAGGCCGTGCATAGGACGCTCAGCACATGCCTTCTGGACAACCCCACCAGCCATACTTTGGAAATATGCTGCCTCATTTTAGAAAATGTAACAAGCTATGTACTCCCGGATCTGGAAGGAAACGAAGACATGTCCCTGAAGTTGTTCTCCTTGAGTGTGCTCTTGTACTCTGTGTTGTTCAGCCTGAAAACTTTGGACAACAGCACACCAGTTCCTGTTGTGAGGCAAACCCAGGCTCTGATGGAGAAGATGCTCCAGGTGGTGAAGCCAGTGCTGCAGCTGGCTGAAGGCCAGGCCCCAGACGTCCCTGGGTGTCAGAAAGTCCAAGATGCAGGCCTTCTGCTAAAGTACACTTGGGTGGAGGTGGACACCCTCTTTCAGATTCACTGTACGAAATACACATCCCCAGCGGACCCAGCTAGCGTTAACATACTAGACGACATAGGTATTCTCCTCTCTGGTGTGATGGCGACAGGTGAAGAGCAGGCCTCTCCCATCGGCCAGCACTGTAGCCCCATGACTCACCTCCTGCAAAAACTGCTCACTCTCCAACAAATGAAGAAAGTTATCCTAAGCAATGAGCTCTTGGCACAGACTAGAGCTTCAGATGTCCTCCGCAGAGCAGCCCAGTACATTGTGGGGAGAGGAGATCCTCAACTCTGCCAGCAGAGTGACCAGCTATGGGACCGTCAGGTCAGTAGTGTGGATGCCAGCACGTACCCAGTGGCACATTGGTACCTCGTTACCACAAACCTACCCATGATCTCGCCATTCCTCACTGAGGACGAAGTGTGTCATATAGCTGATGTTCTCCTCAGCTCCCTACTTCAGAAGACACCAGATGACACCACTgagaggctgtctgtctctctcatttcCAAAGATCTGCTTGGGAGCCTTGTTCTTGTCGAGTTACCCACTATTTACTCTGCTGTTGTCAGATGTGTCACTCAAAGGATTGTGGGGATTCTCAGCGGCATCCCAGACATggcctctgtctgtcctgcacTCATGAAGTTGAGTGAAGTAAGCTGTTtgacagctggagacaaaggaaGTGCAGTAACTCAGTCAGATGGCGATGTCAGTGAATCCCATTCTGCTTTGAAGAGACTGGAGTCCATAGCCCAACACATACTGAACTCTAGTACGACCAGAGCCTCTATAACCCTATCTCAAAGTCAAGCCAATAACCTTTTAAGCTTACTTCAAATCACCAATTCTCTTAACCCAGATGGAATGTCCTCTGAAGACTTTTCAGGGCTCTTTTTACTCTTATTCCTCAtggtcacagacacacagctacaTAATGATGTGAAGCCTGCCGTAACAATACATCTGCTGAATCAGCTCTTCAGTCTCATGGGGTTGCTTCTGGCAGGGAATAATTCCCATCATGTTTTAAAGATTGTGCATGGGAGTAGCCTCTTGGAGGCATCTTTGACAGCTCTCTTTTCACACAGCAATAAGGGCCTCTTTCAAACCGTGGACAGCTCCGCTTGGCTGACTTTCCTAAAAACCGTCCAGGATTTCATCCAGTCCCTGATCCTATTGATAATCCACAGAAAGAGCAGTGTCCGCCTTAACCTGGAGAAATTCACCACCTATTTGGTCAATAGCGAGGTTGCCGTTATGGCTTTGTCTTCTCTCCCAGGAAACATTGAAACAGGGGGCCTGTTCGCCGTACAGCTCCTGCTTGCTTCTATGAACACACTGTGCCAGGCCATGACATCCAGCCTCAGGACAACCAAGCAGCTAGATGAGACCCTGAGTCAATTACTGGGGAAGACCACTGCTGTCATGGGCCCTGCCATCCAGGCCAGCCTGAGGGCTCAGACAGGCAGTCTACTAGGCCAGGCCTTCTCCGTGGATGTGGTGACCGGAATGGTGAGGAGCGAGCTGGCCTGTGCTTGCCCCCAAGATGAGCCTAGCGAGGGCATCACACAGGAGAGTCTAAGCCACATGGGCATGTACAGGAGCTTCAGCCAGCAGATTCTCAGAGAGCTGTGCCCATCCCAGCGCCCCATGGACTTCCTGGTCTCATCGCTCCACTTCCTCTCAGCGTACTATGCTGCTGCAGAGATGACCAAAGCCCTTGGCCAGGAGGAGCTCTTTGTGGCAATTCTGCAGAATGTCCACAAACTGCTTGCAGCACCATGGCTGTCAGTATCAGAGGTGAGGTCCCTGGAGGAGCCAGTAAAGGAGCTTCTGGACCAGCTGCTGGTCAGGAGTACCCCAGAACAGTTCcaccttctcctgctgctgctccgAGACGGACTGGATACCTCCAAGTTCAGGAGCGGCTGTCATAGGGAAGTCCTTTCAACTGTGACGATAACGAAGCTGCTTGCCAGCGGCCTGCTTCCAGAAACCTGCTTAAAGGCGTTCTGGCTCATTGCACCTCAGATCATATCTGCCTTAGTATTTCTAGTGAAGGAGGCTGGCAAGGAGCCAACCCTGACTGCTGCTCTGACCGTGCCAGTGTTGGACACTCTGACAGCCATGCTCCGTCAGGGGGAGAGGATGCTCTCCAACCCCCACCACGTGACCATGGTGCTGGGGGCCCTGCAGTTTGTCCCCCTTGAGCACCTGACGATGGAAGTCTACCACGCTACCTTTGAGGCCATTCACGAGGCTCTGTTTGCAGTCATCCAGTGTCACCCGCAGGTGATGCTGAAAGCGGCACCGTCCTTCCTCAACTGTTTCTACCGCCTGGTGGTCTCCATCATGCATGAGGGGAGACAGAAGGGCGAGGCCGAGAGAGCCCCTGAGATCGATGCGGAGGTGCTTTTGAAGTGTGCTCGTCTGGTGGAACGCATGTACTCCCACATCGCCACCACAGCCGAGGGCTTCactatcctctcctccttcatggTAGCACAGTACGTCAGCGAGCTACAGAAGGTTACTCTGCAACCAGACATCAAGAGCCACCTGACAGAGGGAGTTTACAGGATCCTGGACCTCTGTGTTGAGCAGGACGTTAAGTTTTTGAACACCACCCTCCAGATGGGTGTCAGAGAGGTGTTCAACGATCTCTATGGCAGTTATTCTCATTACCATAAAACCCAGCGGCAAGGAGAGGAGAAATACACAGCCTGACATTCCCCTCTACCATCTCTCTTTCCAGAAATACTTTTTCTTTATAGCAgccaagttttttttttcttaaacaaCTGTTTAAACatgtaaattgtattttttatgttTGTGTGTTGGTTTAGTAGTGGGACAAAAAAGGTAATTGACAACAAATGATGTCTCAAGTgtgttttattttaatacattgttTGGCCTTTCTTGTATTGATGGCTAATGTACTGTAACTTTAGACTATCCAATTTTCAAGAtttgatttacagtgccttcagagagtaattcatacaccttgacttattaaaaattgttacagcctgaattcaaaatggattaaaatttTTGTTTTTTCGCTCACCAATATACACAATAcatattagaatcacctttggcagcgattacaattgcgagtctttctgggaaagtctctgaagagctttgcacacctttattgtacaatatttgcacatgtatttttaacaaaaattcttcaagctctgatgTTGGTTGTTGTTCATTGCTAGGCAGCCATTTCCAAGTccagccatagattttcaagtagatctaagtcaaatctgtaactaggccactcaagaacattaaatgttgtcttggtaagcaagtccagtgtatatttggccttgtgttttagtttattgtcctgctgaaaggtgaatttgtctctgtgtctgttagaaagcagactgaactaggttttcctctaggatttggcCTGCGCTTAGCTCTATTCGGTTTCTTTTTATCCAAAACCGTTCAGATGCTCCAGACTATtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1921681 lncRNA upstream 6596 27092959 ~ 27093174 (+) True G1679862
TU1921655 lncRNA upstream 43134 27056307 ~ 27056636 (+) True G1679837
TU1921651 lncRNA upstream 48962 27047985 ~ 27050808 (+) True G1679833
TU1921649 lncRNA upstream 53210 27046323 ~ 27046560 (+) True G1679832
TU1921646 lncRNA upstream 55071 27044292 ~ 27044699 (+) True G1679829
TU1921713 lncRNA downstream 109671 27242511 ~ 27248194 (+) True G1679880
TU1921788 lncRNA downstream 166875 27299715 ~ 27299952 (+) True G1679954
TU1921790 lncRNA downstream 167970 27300810 ~ 27301075 (+) True G1679956
TU1921791 lncRNA downstream 168362 27301202 ~ 27301521 (+) True G1679957
TU1921801 lncRNA downstream 182454 27315294 ~ 27315592 (+) True G1679967
XM_021576301.2 mRNA upstream 30962 27062285 ~ 27068808 (+) True LOC110499272
XM_021576299.2 mRNA upstream 87159 27005405 ~ 27012611 (+) True LOC110499271
XM_036956093.1 mRNA upstream 121123 26974722 ~ 26978647 (+) False LOC110499270
XM_036956100.1 mRNA downstream 16553 27149393 ~ 27241856 (+) False galnt2
XM_036956101.1 mRNA downstream 16558 27149398 ~ 27241856 (+) True galnt2
XM_021576311.2 mRNA downstream 148004 27280844 ~ 27292092 (+) False cog2
XM_021576312.2 mRNA downstream 148004 27280844 ~ 27292092 (+) True cog2
XM_021576315.2 mRNA downstream 174403 27307243 ~ 27364103 (+) False phactr2
TU1921636 other upstream 12307 27084426 ~ 27087463 (+) True G1679823
TU1920883 other upstream 324090 26700392 ~ 26775680 (+) True G1679135
TU1920840 other upstream 443659 26654627 ~ 26656111 (+) True LOC110499259
TU1920824 other upstream 466572 26632135 ~ 26633198 (+) True LOC110499256
TU1920693 other upstream 631817 26462194 ~ 26467953 (+) True G1678963
TU1922082 other downstream 242514 27375354 ~ 27375819 (+) True G1680230
TU1923119 other downstream 1584521 28717361 ~ 28726495 (+) True G1681180
TU1923788 other downstream 1645166 28778006 ~ 28778409 (+) True G1681792
TU1924556 other downstream 2324388 29457228 ~ 29457921 (+) True lhcgr
TU1924589 other downstream 2439595 29572435 ~ 29576558 (+) False LOC110499316

Expression Profile