RNA id: XM_021576312.2


Basic Information

Item Value
RNA id XM_021576312.2
length 2808
RNA type mRNA
GC content 0.48
exon number 18
gene id cog2
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 27280844 ~ 27292092 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atctgtctcattgttctatctgtggtggTACATTGCCATGTTTGCGGAAGTATAATTTCAGTATTTTTCCCCTCTTCAGAAATGATTTAGCAACCTTTTTTTAACTTTATATTATAACTACATGTCCAGCCTTTATCGATTTCAAGGATAGTACGAAAGAAAAATGAATCTGCCAAAGGGGCCGGATTCTCTCTGTTTCGACAAGGACGTGTTTATGAAGGATGACTTTGACGTGGATCAGTTTGTTGCTGATTGCAGAAAGCATGTCCAGCTGGAGGAGATGCGCGAGGACCTTGAGATGTATTACAAACTGCTCAAAACAGCCATGGTGGAGCTCATCAACAAAGACTATGCAGACTTTGTCAACCTCTCCACCAATCTGGTTGGAATGGACAAAGCCCTGAACCAGCTATCAGTGCCACTGGGTCAGTTGCAGGAAGAGAGCTTGAGAACATCTGTAAGTGAGGTGATCCAAGCCATTGACAACCAGCTATCAAAGCAAGATGACTTGCAAAACAAAAAGATGTGTGTCACAAGACTCATCCAAGTTGTTCGATCAGTAGAGAAGATTGAAAAAATCCTACATTCTCAGAACTCAAAAGACTCAACATCTCTTGAGATAAGcagTCCTCTCTTAGCTGGCCAGATTCTGGAGCGGATTGCCACAGAGTTCAACCAGCTGCAGTTCCATGCTGTCCAAAGCAAGGGCATGCCCCTGCTGGACAAAGTCAGGCCTCGTATTTCCGGCATCACGTCCATGCTACAGCAGTCTTTGGAGGGGCTCCTTATACAGGGCCTCCAGACCTCCAATGTGGATATTGTGCGTCACTGCCTACGCACTTACGCCACCATCGACAAGACCAGGGACGCAGAGGCGCTGGTGGGACAAGTCCTGGTCAAGCCCTACATGGATGAGGTCATCGTTGAACAGCTGGTCAAGTCCACCCCCAATGGCCTTCAAATAATGTACACCAAGCTCTTAGAGTTTGTGCCGCATCACTGTAGACTGCTGCGCGAGGTGACTGGAATGGCCATTTCAAGTGAAAAGGCAGACATAGTGCCTGGATACGACTTCTTGGTGAACTCCGTTTGGCCTGAAATCATCAAAGGTATCGAGGAGAGAATCCCCTCTCTCTTCAACGCGGGCAACCCTGACACCTTTTATGAGAGGTACACAATCAGCATGGACTTTGTGAGGAAGTTTGATAGGCAGTGTGGCTCCCAAGCCAGTGTGAGGAGACTGAGAGCTCACGCCTCCTATCAGAGCTTCCACAACAAGTGGAACCTACCTGTCTACTTCCAGCTCCGGTACAAGGAAATTGCTGCATGTTTAGAGAATGCTATTGCTGATGGGTTAGAGGCAGCACCAGCGGGCAGCTGCTACCACCTGCTGGTGTCCCAGGTGCTGTGGAACAGCTTGGTCAGGTGCTGGGCGGAGAAGGTCTACCTGCCCCCGTTGTCTCACCGCTTCTGGAAGCTCACCCTGCAGCTCATCTCACGCTACTCCAAGTTCCTCACTGAGATGCTGACTAAATCTCCCTCCACGGAGGTCAGTAAAGACCCTGTGAGGCCCCTCCCCAGCTCCGCCTCCTCCACGTCCAGTCGCACCTCTCAGGATGATGGGGGCAGTGAGAGTGGCAGCCCAGCAACCCTATCTACCAAACAGCTGGTTTTTATAGCCTCCGATGTGGACAAACTACAGGACCAGATTCCGGAACTTTCTAAGATGATTATGCAGAAACTGGAGGTCATTGGGTACAAAAACGTTGTAATTGTTGGAGAGGCCCTAGAAGACTCCAAAGCCTCCCTGTCTGGCTGCATTCCCACCCTGAACAGCAAGATGACTCGGCATTTAACTGAGAGGTGCTTTCGCTTCCTGAAGAGTGCCTCTGAGGTCCCCCGACTATACCGAAGGACCAACAAAGAAGTTCCCTTCAGAGCTTCTGCCTACATGGACAACGCCCTGCGGCCGCTGCACCAGCTCCTGAGCGACTCCAAAGACATGGTGAAGCCCTCCATTGCCCAGGACTGGCTACGGGTCGCACTCAATGACTGCACTCACAGATATTTTGAAACCATATCAGATGTTTTGAGTTCCGTAAAAAAAATGGAGGAAAGTTTAAAGAGACTGAAGCAAGCGAGGAAAACGGCAACCACCAACACGATAGGTACCACTGGAGGCCCCACGGATGACAGCAAGATCCGCCTGCAGCTGGCCTTGGATGTGGAGTACCTGGGAGAGCAGATTCAGAAGATGGGTCTGCAACCTGCCGACATCACCATGTTCTCAACACTAAATGACTTGGTCCAAGGAGCACAGGACGTGACTCCATCAGAGCAGGCTGGACCATAATCCTGCACCTATCTGAATGCTCGTAGATAGAAGGAAGAAAGCACAATGAGGGACTGGGTCTTATTTATTTTGAACGCTAATCATATGAAAGATGGTATTGAAATCAAGAGAACTTCAACATTTTAATTTTCAATAGTAATTCAATATTTCTTACTGACCGCCTGACTGTTCATAACAGcaaatgtgtaatgtaatgggGTCAAAgggggttaaccctaaccctctatgcCTGCCTGAGAATTCACTGTACGTTCAATAATGCAAGTTATGTCATCATACAAAAGAGATACTGGCAAAAAGTAGACCAGGGCAGCTTCTTGGTCTACTTTTTTAGTGAAGGATAAAGATATTGTACATCGTGAACAGAGTTGGTGAAGGATGAGattgtacatttttttaaataaggtGAATCGAAGTTGTAATAACCTTGGTAATAAAAGCTTTCGATCTTTGTA

Function

GO:

id name namespace
GO:0007030 Golgi organization biological_process
GO:0015031 protein transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K20289 COG2; conserved oligomeric Golgi complex subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1921713 lncRNA upstream 32650 27242511 ~ 27248194 (+) True G1679880
TU1921681 lncRNA upstream 187670 27092959 ~ 27093174 (+) True G1679862
TU1921655 lncRNA upstream 224208 27056307 ~ 27056636 (+) True G1679837
TU1921651 lncRNA upstream 230036 27047985 ~ 27050808 (+) True G1679833
TU1921649 lncRNA upstream 234284 27046323 ~ 27046560 (+) True G1679832
TU1921788 lncRNA downstream 7623 27299715 ~ 27299952 (+) True G1679954
TU1921790 lncRNA downstream 8718 27300810 ~ 27301075 (+) True G1679956
TU1921791 lncRNA downstream 9110 27301202 ~ 27301521 (+) True G1679957
TU1921801 lncRNA downstream 23202 27315294 ~ 27315592 (+) True G1679967
TU1922080 lncRNA downstream 89894 27381986 ~ 27384601 (+) True G1680228
XM_036956100.1 mRNA upstream 38988 27149393 ~ 27241856 (+) False galnt2
XM_036956101.1 mRNA upstream 38988 27149398 ~ 27241856 (+) True galnt2
XM_036956098.1 mRNA upstream 148004 27099770 ~ 27132840 (+) False LOC110499274
XM_021576306.2 mRNA upstream 148004 27111336 ~ 27132840 (+) True LOC110499274
XM_021576301.2 mRNA upstream 212036 27062285 ~ 27068808 (+) True LOC110499272
XM_021576315.2 mRNA downstream 15151 27307243 ~ 27364103 (+) False phactr2
XM_021576314.2 mRNA downstream 23779 27315871 ~ 27364103 (+) False phactr2
XM_021576316.2 mRNA downstream 23779 27315871 ~ 27364103 (+) False phactr2
XM_021576317.2 mRNA downstream 23789 27315881 ~ 27364103 (+) True phactr2
XM_021576320.2 mRNA downstream 202336 27494428 ~ 27534484 (+) False rgs17
TU1921636 other upstream 193381 27084426 ~ 27087463 (+) True G1679823
TU1920883 other upstream 505164 26700392 ~ 26775680 (+) True G1679135
TU1920840 other upstream 624733 26654627 ~ 26656111 (+) True LOC110499259
TU1920824 other upstream 647646 26632135 ~ 26633198 (+) True LOC110499256
TU1920693 other upstream 812891 26462194 ~ 26467953 (+) True G1678963
TU1922082 other downstream 83262 27375354 ~ 27375819 (+) True G1680230
TU1923119 other downstream 1425269 28717361 ~ 28726495 (+) True G1681180
TU1923788 other downstream 1485914 28778006 ~ 28778409 (+) True G1681792
TU1924556 other downstream 2165136 29457228 ~ 29457921 (+) True lhcgr
TU1924589 other downstream 2280343 29572435 ~ 29576558 (+) False LOC110499316

Expression Profile