RNA id: XM_021576316.2


Basic Information

Item Value
RNA id XM_021576316.2
length 4132
RNA type mRNA
GC content 0.47
exon number 13
gene id phactr2
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 27307243 ~ 27364103 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACttcgtggacagattttgggcggagtaaaccacctcgcttcgcctcttcctctctggtagtAGAGAATTCCTCCCTTCGACCTCTGACGGGTAGTATCCTAATCTGCATAAAGAAATGACAGGCATTCTTGAGCTGAATCGGAGGGAGGTTAAACAGAGGTTCTCAGACCAAGCGACGTTTTTTTCAATAGTTTTAACCCAACAATTGGCCTGAAGTAGGTCAAATTAACTTTAGGATTTGGCGATGACTTTATTGTGAAAGTTCATCGGGGACCGCGTGATTGTTGGTTTGGCGGTCCATTGAAGACAGAATGGGCCAGACTTCTGTCTCCTCCTTGTCTCAAAATGCGAGTGTTGATGGACTGGAAAAAGCATCTCTGTCCAACTGTGATGTTGTGGTGGGCAGCACCCAGACTCCTCCACTGAAGCAGAAGGGGAAGCTCTCCACTATAGGGAAGATCTTCAAACCCTGGAAATGGCGCAAGAAGAAAACCAGTGACAAGTTTCAGGACCTATCCAAAGTTCTGGAGAGGAAAATCTCCACGAGGCAAAGTCGAGAGGAGCTGATAAGAAGAGGCGTTCTCATTCCCGATCAAGAGGAGCCAGTGAACTCTGAGAATCTAAATGGCCATGCAACGCCTAGTGTGGGGTCAGATGAGGTCAAAGTTGACATGGAGTCTCCGCAAACACCTTTGGAGGAGAAGACAAAAGGGTCGGAGAATGTGGAGGACAAAGCAGTAAGGAATGAAATCAAAGCTACTCCAAAAGGAAACCAGGCCAGAACGCGGGAGGCTAAAAAACATCCCACCACCGCTCCTCCCAAATCAGCTGGTGGGGCTACAGCAGGGCGCAGGGACGGGACCGCTGGTGTTAAAAAGCTGCCAAAAAGCACAGGCAAGCAAGCTTCCACTCTGCCGCCCAAACAAAACCCTCGAAACAATTACATTGGGAACGccaAATCCTCTCATCCTAAGAAAACTGGAGGCACATCCAAGAGCACGGCCCagtcctcatcctcctcatcgtCCACACCGCGTACCACAAAGACCTCCAAGGACAGGCCTGCCAACCCAACTGGGACAGAGAAGACAAACAAGCGCGTCCTCCAACTAGTAACTAACCCTTCCAGCTTCTCTGGAGCTCCCAAGGCCTCCCCAGAGACAGTCAACCTTTCTGGGGAGAGACGGGTCCCGGGCACTGGGCATGGGAACCAGGGGTGCAAGGAGGAGCCCTCTTCTGGCCCAGAAGGCAGGCCTGCTGCTCAGGATGACTCTTCTCTGACTGGAATGGATAAAGACAATGCCTCAGGAGCCAGTCCTCAGGACCCTGGGGAGAAGGCCCCTCTGGTCAACAACACCACTGAGGACACTTTCTTCACCGAGTCTCATAGCGAGAGCTCCAAGGAGGAATCCCTGGGGACTGGGGAAGATGGAGGTGGGCAACAGTCGGGGGACGCAGACCATGAGTTAGAGAAACGTCAGTGGCCTACCAATGGGATTGGAGAGAAGAAGCTCCACAGTGTTAACCTGGAGAGCCCAGAGGTTACAGTCATCCCAGACAGCACTACGGAGTCTGACTACCAGTCCACAGTCAGCGACTCCGACTCAGATGGGCCCATCCTCTACCGAGACGAAGACGAGGATGAGGAAGACGAGTATACCACAAGCTCCCTAGCCAGTAAGATCCGCCGCAGGGACACCCTGGCCATCAAACTGGGCAACCGGCCCAGCaagagagagctggaggagaaGAACATCCTGCCTCGCACCTCTGAGACTGAGAGGCAGGAACTCCGGCAACAGATTCACTCCAAGCTAGTGAGACGACTTAGTCAGAGGCCCAGCACTGAGGAACTGGAGCAGAGGAACATTCTGAAACAGACTAATGAAGCTGATAAACATGAAGCCATACAAGAGATTAAAAGGAGACTCTCCCGAAAGctGAGTGTGAGGCCCACAGTAGCAGAGCTGGTGGCTCGGCGGATTCTGCGCTTCAATGAGTATGTGGAGTGCACAGATGCTAAGGACTATGACCGGCGTGCAGACAAACCCTGGACCAGGCTCACTCCAGCTGACAAAGCTGCTATCCGTAAAGAACTGAATGAGTTCAAAAGCAAAGAGATGGAAGTTCATGAAGAGAGCAAGCAATTCACCAGGTTCCATCGACCCTGAGGTGTCTATTTCTTCAATGGGGGTCCTGGTCAGCTGCCGGCCCTGCCTGAGGGCTCTTTCTTCCAGCTGCCCTGTGTCCCGCTGTGGGCTTCACCGAAGCCTGGAGCCTAGATGCCCCTAGGCACGGACACATGGACAATGTCCCCTGGGGCAAACTTGTCTCCAGCCTTAGAGATCAATGACATTGGGCCACACCTGGTTACACAGACCAGACTGAGCTTTAGTGTTGTGtggaaagatacagagagagagagggagaccaatATCCATCCAGAGAATGTGAATGGGCCGAGCCCATGCCCATTCACCGTCTTTGCACACCATGAAGAAACAAAACTGTTGCACTTTGTAACACAGCGCTGATTGAATTACCCACATACTGTACCTGTTGGCTTCCCCTAACGCCCCCTAACAAACTTTGACCAAGTCCCTGTGGAAGGGAAATGGTTTTGCAACTATGGCGATGTTGTAGGTTAGGCAAGTCCAGCCAAGGGTAACGGTAATCAAATCAATTCAGCTTAAACGGTGCAATTAAATGCTTACTTGCGAGCTTCCTCTACAGTGCAATGAAaaatataaacaaataaaaaaatgaaacacATATTCATAAGCTTAACGTAATGTAAGTGCATGGAAAGGAGTGTTGAAGGAAGAATGGTCACTTTTACTGCCATGTGCTTTTGATGGTGGAAATAAAGGTGTTTTAGGTCTTGTTTTAAGAGGTGGTTGTTCATGCTGATCTTAAAGTGGCTGGGACTACATGAATTGTGCCTAGAAACTAAGCATTATGTATCATTACTATATGTGTCATGCTTTTTGGAACTGTAAGTTACCATTATTGAGCATATCTTTATGAGGACAGAGCAGAGTGGACCCTTTTGATTGGTGTAGGCGATCCTTTGCAAATACCCCTCTGTCTGCAAGTCATCCAGTGAGTTTCCAAATTTAGAACAAGTTCAGACAAAATTGGTCTGCTTTTGATTGGTTGAGCTGTTCGTAATGGATGGTCTGTGTAGTTTGAAAGGATGTGGTAAATGTTAGCATTTTACAGACCGAGATAAATCCATCAGGAGCTTTATTCCTGGTCATAAAatgtccaaaatgtattttgtaaagCATTTCTTTTACATTTCTGTGATCAGGTACACCAATCCATCAGAATGTATATTAATTTCAGACTGCTAAGGGCAGGTGTAGAATATTGGAGGAGAACCACAGTATTCATGTCCATTTCTTTCTCATTCTATAGATTTTCTGTAAGAAAATGTATATCTGATGCATGATCACAACTTTACTGCCAATTACCTGATAGATTTTTACATTGATGTGATGAAGAGGACAATTTTCGTAGTTTATTTTTAAACCCACCCCAATCTCGATTGATGGCGCTATGTGCTGTTCATATGTGAGTACTGTATCTTTGAATTATGTCATGTACATAATAGTAATGTATATGCAGTTATTGTCACTCCCATATTTATCATGCATATAGGTCTATACGTGCATCATATGCCTctaaatgtctttatttttcaGTTGTTGATCACATAACTAGATACCATTTCTGCGAAACATCAACGGTGTATGCTCAGGAGGAAGATGCCATAACCCTTCAGTATTAGCTACATAGACTGAAAGTGACCCCATGGCCACTGAATTGGTGTCACATGTTGACTTAGACATCCATTAGGATGTCATATATATTGATGAAAATACACACTGAATGTCTCACCGTCATTGTGTGTTGGTTTGTATGAGATTCCTTTTTTTCGTACTGCTTCTGTGATCATTGTGCAGAATGGCTTTAAAGTGGCCAGGATCCAAATGTTTTcgaagtgtgtttgtgttgaaaaTCATCTGTGCAGTGGAAAGTAATGTGTCTGCCTGGCCTGAGCCCGCCGTGCAGTCAACTGTGAAGCCATTGAGTGGGTCAATTAAAAGCTGAGCAGGAGGGGGTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1921801 lncRNA upstream 279 27315294 ~ 27315592 (+) True G1679967
TU1921791 lncRNA upstream 14350 27301202 ~ 27301521 (+) True G1679957
TU1921790 lncRNA upstream 14796 27300810 ~ 27301075 (+) True G1679956
TU1921788 lncRNA upstream 15919 27299715 ~ 27299952 (+) True G1679954
TU1921713 lncRNA upstream 67677 27242511 ~ 27248194 (+) True G1679880
TU1922080 lncRNA downstream 17883 27381986 ~ 27384601 (+) True G1680228
TU1922265 lncRNA downstream 269139 27633242 ~ 27633604 (+) True G1680391
TU1922266 lncRNA downstream 269592 27633695 ~ 27634069 (+) True G1680392
TU1922267 lncRNA downstream 270548 27634651 ~ 27635105 (+) True G1680393
TU1922268 lncRNA downstream 271698 27635801 ~ 27636483 (+) True G1680394
XM_021576311.2 mRNA upstream 23779 27280844 ~ 27292092 (+) False cog2
XM_021576312.2 mRNA upstream 23779 27280844 ~ 27292092 (+) True cog2
XM_036956100.1 mRNA upstream 74015 27149393 ~ 27241856 (+) False galnt2
XM_036956101.1 mRNA upstream 74015 27149398 ~ 27241856 (+) True galnt2
XM_021576306.2 mRNA upstream 183031 27111336 ~ 27132840 (+) True LOC110499274
XM_021576320.2 mRNA downstream 130325 27494428 ~ 27534484 (+) False rgs17
XM_036956104.1 mRNA downstream 130325 27494428 ~ 27534484 (+) True rgs17
XM_036956108.1 mRNA downstream 246520 27610623 ~ 27626785 (+) False map3k21
XM_036956107.1 mRNA downstream 246523 27610626 ~ 27626785 (+) False map3k21
XM_021576321.2 mRNA downstream 246571 27610674 ~ 27626785 (+) False map3k21
TU1921636 other upstream 228408 27084426 ~ 27087463 (+) True G1679823
TU1920883 other upstream 540191 26700392 ~ 26775680 (+) True G1679135
TU1920840 other upstream 659760 26654627 ~ 26656111 (+) True LOC110499259
TU1920824 other upstream 682673 26632135 ~ 26633198 (+) True LOC110499256
TU1920693 other upstream 847918 26462194 ~ 26467953 (+) True G1678963
TU1922082 other downstream 11251 27375354 ~ 27375819 (+) True G1680230
TU1923119 other downstream 1353258 28717361 ~ 28726495 (+) True G1681180
TU1923788 other downstream 1413903 28778006 ~ 28778409 (+) True G1681792
TU1924556 other downstream 2093125 29457228 ~ 29457921 (+) True lhcgr
TU1924589 other downstream 2208332 29572435 ~ 29576558 (+) False LOC110499316

Expression Profile