RNA id: TCONS_00004740


Basic Information

Item Value
RNA id TCONS_00004740
length 744
RNA type mRNA
GC content 0.51
exon number 7
gene id XLOC_002544
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 5041977 ~ 5058823 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGAGGAAGTGCAGTCCATGGATGTTTCTGCCTATAATGTTTTCTTTCTTCACAGCCGCAGGCCTTTGGGTGGTGTATTTCATTGCTGTGGAGGATGAGAAAATCACACCACTCAGTTCTGAGTACAAGAGGTCAGAATCAAAATCTCCTCCATATAtcagCATTGCAGGCAATGCTCCACCTGCCAGCTGTGTGTTCAGTCAAGTCATGAACATGGCAGCCTTTGTAGGCTTCATTCTTGGAGTACTGCGATATTTGCAGCTCAAACCCAGAGTCCACAAACCCTGGCTCAACATCGGCAGTCTGGTGGCTTTGTCTCTGGCCTGCTTCGGGATGACTCTAGTTGGCAACTTTCAGCTTTCCAATGATGAGGAGCTGCACAACATAGGCACGTCCATGACCTTTGGCCTGGGAACGCTTTTCTGCTGGGTCCAGTCCTTCATGACCCTGAAGGTGAACTTGCGCAATGAAGGCAAGCGTGCAGGAATCCCTCGCTTCCTGCTGTCCGGCGCCGTGACTTCCTGCATGCTGCTCTATTTTGCTCTGATGGCTCAGCGGCTCCACATGCACGCTGCCCGGGCCCAGTGGGCACTGGTTATGTTCTTCCTCACATACCTGGGCACATTTGCCATCGAGTTTCGCCACTACCATTTTGAGATTGTTTGTAGCGACGACCAGGACCCTCCGCTCAGCCTGTCTGAAAGCTTTTCAGAAGTCTCAGAGTATCAGTCTGACCAACTCTAA

Function

GO:

id name namespace
GO:0010506 regulation of autophagy biological_process
GO:0005764 lysosome cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-090112-5 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Orthologous to human TMEM150C (transmembrane protein 150C).

Ensembl:

ensembl_id ENSDART00000193579

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005986 lncRNA downstream 17984 5018558 ~ 5024285 (-) False XLOC_002543
TCONS_00004732 lncRNA downstream 31994 5003992 ~ 5010275 (-) False XLOC_002543
TCONS_00005746 lncRNA downstream 120218 4919323 ~ 4922051 (-) True XLOC_002540
TCONS_00005985 lncRNA downstream 223663 4812304 ~ 4818606 (-) True XLOC_002539
TCONS_00005984 lncRNA downstream 223958 4812304 ~ 4818311 (-) False XLOC_002539
TCONS_00005987 lncRNA upstream 168326 5221915 ~ 5222419 (-) False XLOC_002546
TCONS_00005988 lncRNA upstream 168326 5221915 ~ 5223942 (-) True XLOC_002546
TCONS_00004744 lncRNA upstream 471804 5525393 ~ 5527364 (-) True XLOC_002547
TCONS_00005989 lncRNA upstream 735031 5788620 ~ 5790151 (-) False XLOC_002550
TCONS_00005990 lncRNA upstream 801045 5854634 ~ 5855125 (-) True XLOC_002552
TCONS_00004734 mRNA downstream 17749 5017216 ~ 5024520 (-) False XLOC_002543
TCONS_00004735 mRNA downstream 17749 5017218 ~ 5024520 (-) False XLOC_002543
TCONS_00004733 mRNA downstream 20093 5017216 ~ 5022176 (-) False XLOC_002543
TCONS_00004731 mRNA downstream 21891 5002147 ~ 5020378 (-) False XLOC_002543
TCONS_00004730 mRNA downstream 25272 5000623 ~ 5016997 (-) False XLOC_002543
TCONS_00004742 mRNA upstream 38922 5092511 ~ 5135788 (-) False XLOC_002545
TCONS_00004743 mRNA upstream 40534 5094123 ~ 5135788 (-) True XLOC_002545
TCONS_00004745 mRNA upstream 480254 5533843 ~ 5568379 (-) False XLOC_002548
TCONS_00004746 mRNA upstream 482543 5536132 ~ 5581487 (-) False XLOC_002548
TCONS_00004747 mRNA upstream 483177 5536766 ~ 5568379 (-) True XLOC_002548
TCONS_00004738 other downstream 17984 5020277 ~ 5024285 (-) True XLOC_002543
TCONS_00004737 other downstream 19855 5020186 ~ 5022414 (-) False XLOC_002543
TCONS_00004736 other downstream 21769 5018558 ~ 5020500 (-) False XLOC_002543
TCONS_00004723 other downstream 1273503 3768651 ~ 3768766 (-) True XLOC_002530
TCONS_00004722 other downstream 1535615 3506540 ~ 3506654 (-) True XLOC_002529
TCONS_00004756 other upstream 896874 5950463 ~ 5950578 (-) True XLOC_002554
TCONS_00004759 other upstream 1364116 6417705 ~ 6431288 (-) True XLOC_002557
TCONS_00004760 other upstream 1419117 6472706 ~ 6472832 (-) True XLOC_002558
TCONS_00004765 other upstream 1557486 6611075 ~ 6638235 (-) False XLOC_002562
TCONS_00004766 other upstream 1568980 6622569 ~ 6623404 (-) False XLOC_002562

Expression Profile

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